CU116372 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU116372
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Low-density lipoprotein receptor-related
Location	Chr6 : 4758172 .. 4758654 (-)
Sequence length	397

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTTCTCTTCTTCTTTGTCCTGATCTAACCATTTCAACTCCATCGCGGGAATCTCTGAGCTCTCTCTCTCTCTCTCTCTATCTATCTCTTTCTTCTAGACATAGCCACCGGAAAACAATGGCGTCGTCGACGGCTAAGATTACGTTTCGTGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCTACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGCCTCTCTCAGATTGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCATGATGAGTCGGACTCGGGCGTTCATGATGGAAATGGTGGAAAGAAAGCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGTT

Library


Library category	ESTs
fruit (8DPP) library	2
gynoecious flower library	1

Homology

[Close]

BLAST of CU116372 vs. TrEMBL
Match: A0A0A0KBE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067370 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-37
Identity = 81/93 (87.10%), Postives = 81/93 (87.10%), Query Frame = 3


Query: 117 MASSTAKITFRXXXXXXXXXXXFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 176
           MASSTAKITFR           FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1   MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 177 SVGWYHDESDSGVHDGNGGKKAGSGAIRRLLHQ 236
           SVGWYHDESDSGVHDGN GKKAGSGAIRRLLHQ
Sbjct: 61  SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

Query: 237  296
           
Sbjct: 121  93

Query: 297  356
           
Sbjct: 181  93

Query: 357  396
           
Sbjct: 241  93

[Close]

BLAST of CU116372 vs. TrEMBL
Match: W9S2S8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011283 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.4e-27
Identity = 64/90 (71.11%), Postives = 69/90 (76.67%), Query Frame = 3


Query: 117 MASSTAKITFRXXXXXXXXXXXFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 176
           MASSTAKITFR           FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIV+EAQ+
Sbjct: 1   MASSTAKITFRIAMVVLVLLLFFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVMEAQR 60

Query: 177 SVGWYHDESDSGVHDGNGGKKAGSGAIRRL 236
           +VGWYHDESDSG  +G  GK   S   R+L
Sbjct: 61  TVGWYHDESDSGAREGRFGKNLRSATSRKL 90

Query: 237  296
           
Sbjct: 121  90

Query: 297  356
           
Sbjct: 181  90

Query: 357  387
           
Sbjct: 241  90

[Close]

BLAST of CU116372 vs. TrEMBL
Match: M5XMT6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013919mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-24
Identity = 61/94 (64.89%), Postives = 68/94 (72.34%), Query Frame = 3


Query: 117 MASSTAKITFRXXXXXXXXXXXFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 176
           MASS A+ITFR           FYVGRPLYWKISAT+H+IR+NKQTV++GLS+IVLEAQK
Sbjct: 1   MASSAARITFRILIIALVLLVLFYVGRPLYWKISATIHEIRENKQTVQQGLSKIVLEAQK 60

Query: 177 SVGWYHDESDSGVHDGNGGKKAGSGAIRR-LLHQ 236
           SVGWYHDESDSG       K  G    RR LLHQ
Sbjct: 61  SVGWYHDESDSGSRVNRVAKNVGLATTRRLLLHQ 94

Query: 237  296
           
Sbjct: 121  94

Query: 297  356
           
Sbjct: 181  94

Query: 357  396
           
Sbjct: 241  94

[Close]

BLAST of CU116372 vs. TrEMBL
Match: A0A0D2UVA1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G183300 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-23
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 3


Query: 117 MASSTAKITFRXXXXXXXXXXXFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 176
           MASST++ITFR           FYVGRPLYWKISAT+HDIR NKQTV++G+SQI+LEAQK
Sbjct: 1   MASSTSRITFRIVIALLLLLALFYVGRPLYWKISATIHDIRHNKQTVQQGISQIMLEAQK 60

Query: 177 SVGWYHDESDSGVHDGNGGKKAGSGAIRRLL 236
           SVGW+ DESDSGVH+    K +   A RRLL
Sbjct: 61  SVGWFTDESDSGVHE----KTSKQAASRRLL 87

Query: 237  296
           
Sbjct: 121  87

Query: 297  356
           
Sbjct: 181  87

Query: 357  390
           
Sbjct: 241  87

[Close]

BLAST of CU116372 vs. TrEMBL
Match: A0A0D2RYN0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G074800 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.8e-23
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 3


Query: 117 MASSTAKITFRXXXXXXXXXXXFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 176
           MASST+K+ FR           FYVGRPLYWKISATVHDIR NKQTV+EG+SQI+LEAQ+
Sbjct: 1   MASSTSKLAFRIVLAVLLLLALFYVGRPLYWKISATVHDIRHNKQTVQEGISQIMLEAQR 60

Query: 177 SVGWYHDESDSGVHDGNGGKKA 236
           SVGW++DESDSG+H+ N GK+A
Sbjct: 61  SVGWFNDESDSGIHE-NRGKQA 81

Query: 237  296
           
Sbjct: 121  81

Query: 297  356
           
Sbjct: 181  81

Query: 357  363
           
Sbjct: 241  81

[Close]

BLAST of CU116372 vs. NCBI nr
Match: gi|700190975|gb|KGN46179.1| (hypothetical protein Csa_6G067370 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-37
Identity = 81/93 (87.10%), Postives = 81/93 (87.10%), Query Frame = 3


Query: 117 MASSTAKITFRXXXXXXXXXXXFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 176
           MASSTAKITFR           FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1   MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 177 SVGWYHDESDSGVHDGNGGKKAGSGAIRRLLHQ 236
           SVGWYHDESDSGVHDGN GKKAGSGAIRRLLHQ
Sbjct: 61  SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

Query: 237  296
           
Sbjct: 121  93

Query: 297  356
           
Sbjct: 181  93

Query: 357  396
           
Sbjct: 241  93

[Close]

BLAST of CU116372 vs. NCBI nr
Match: gi|778710941|ref|XP_011656651.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-37
Identity = 81/93 (87.10%), Postives = 81/93 (87.10%), Query Frame = 3


Query: 117 MASSTAKITFRXXXXXXXXXXXFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 176
           MASSTAKITFR           FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1   MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 177 SVGWYHDESDSGVHDGNGGKKAGSGAIRRLLHQ 236
           SVGWYHDESDSGVHDGN GKKAGSGAIRRLLHQ
Sbjct: 61  SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

Query: 237  296
           
Sbjct: 121  93

Query: 297  356
           
Sbjct: 181  93

Query: 357  396
           
Sbjct: 241  93

[Close]

BLAST of CU116372 vs. NCBI nr
Match: gi|778710944|ref|XP_011656652.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X2 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-37
Identity = 81/93 (87.10%), Postives = 81/93 (87.10%), Query Frame = 3


Query: 117 MASSTAKITFRXXXXXXXXXXXFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 176
           MASSTAKITFR           FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1   MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 177 SVGWYHDESDSGVHDGNGGKKAGSGAIRRLLHQ 236
           SVGWYHDESDSGVHDGN GKKAGSGAIRRLLHQ
Sbjct: 61  SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

Query: 237  296
           
Sbjct: 121  93

Query: 297  356
           
Sbjct: 181  93

Query: 357  396
           
Sbjct: 241  93

[Close]

BLAST of CU116372 vs. NCBI nr
Match: gi|778710947|ref|XP_011656653.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-37
Identity = 81/93 (87.10%), Postives = 81/93 (87.10%), Query Frame = 3


Query: 117 MASSTAKITFRXXXXXXXXXXXFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 176
           MASSTAKITFR           FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1   MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 177 SVGWYHDESDSGVHDGNGGKKAGSGAIRRLLHQ 236
           SVGWYHDESDSGVHDGN GKKAGSGAIRRLLHQ
Sbjct: 61  SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

Query: 237  296
           
Sbjct: 121  93

Query: 297  356
           
Sbjct: 181  93

Query: 357  396
           
Sbjct: 241  93

[Close]

BLAST of CU116372 vs. NCBI nr
Match: gi|659117277|ref|XP_008458515.1| (PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 3.5e-35
Identity = 79/93 (84.95%), Postives = 79/93 (84.95%), Query Frame = 3


Query: 117 MASSTAKITFRXXXXXXXXXXXFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 176
           MASSTAKITFR           FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1   MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 177 SVGWYHDESDSGVHDGNGGKKAGSGAIRRLLHQ 236
           SVGWYHDESDSGV DGN GKKAGS AIRRLLHQ
Sbjct: 61  SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQ 93

Query: 237  296
           
Sbjct: 121  93

Query: 297  356
           
Sbjct: 181  93

Query: 357  396
           
Sbjct: 241  93

The following BLAST results are available for this feature:

BLAST of CU116372 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBE9_CUCSA	2.6e-37	87.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067370 PE=4 SV=1	[more]
W9S2S8_9ROSA	2.4e-27	71.11	Uncharacterized protein OS=Morus notabilis GN=L484_011283 PE=4 SV=1	[more]
M5XMT6_PRUPE	2.5e-24	64.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013919mg PE=4 SV=1	[more]
A0A0D2UVA1_GOSRA	2.1e-23	64.84	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G183300 PE=4 SV=1	[more]
A0A0D2RYN0_GOSRA	2.8e-23	68.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G074800 PE=4 SV=1	[more]

BLAST of CU116372 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190975\|gb\|KGN46179.1\|	3.7e-37	87.10	hypothetical protein Csa_6G067370 [Cucumis sativus]	[more]
gi\|778710941\|ref\|XP_011656651.1\|	3.7e-37	87.10	PREDICTED: uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus]	[more]
gi\|778710944\|ref\|XP_011656652.1\|	3.7e-37	87.10	PREDICTED: uncharacterized protein LOC101217077 isoform X2 [Cucumis sativus]	[more]
gi\|778710947\|ref\|XP_011656653.1\|	3.7e-37	87.10	PREDICTED: uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus]	[more]
gi\|659117277\|ref\|XP_008458515.1\|	3.5e-35	84.95	PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G067370	Csa6G067370	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02MBLEZ	FKNP3UI02MBLEZ	EST
FKNP3UI02N3HWW	FKNP3UI02N3HWW	EST
G0105678	G0105678	EST