Cp4.1LG17g01020 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g01020
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionLow-density lipoprotein receptor-related
LocationCp4.1LG17 : 647591 .. 648447 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATACCCTTTGTGAGAACCCGCTGAACAACTCTTCTTTTTGCCTGATCGAACCATTTCAACTGCATAGCGGGAATCTCTATGCTCTGATAGATCACAGTTTTTCTCGCTCTCTCTCTCTCTATCTTTCTCTCTGTTTCTCTCTGCAAGACAAAGCCACCGGAAGCAATGGCGTCGTCGGCAGCTAGGATTACGTTTCGCGTTGTCATGGTGGTAGTCCTCCTCCTCGTCATTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGCCGGAACAAACAGACCGTCAAAGAAGGTGTGTTTAATTTGATGTTAAATTTGTATGTTTATGCTCGCCGGTGATTTGAAATGGAGTTTCAATTCTTTGTGTTGGACCTGCATTTCAGGTTTCTCTCAAATCGTTCTTGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGGAGCTGATGGAAAGAAGGCTGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTCGTGAAAATCTCAGTTATTTGAATTGTGATTAGTCCTGAGAATTGAATGGTTTCATATGCATTAGTAAAGATAAATCAACGGATCTGGTTTTGTTTTGTTTTTGTTTTGTCGTAATAAAGTGATATAATGACTGAAGTAGCAACTATTGAATTAGTTTAGTTAAGAAACCGCAATGCTTCAGCGTTCAGCCTTCAGTGTTGCCACTATGCATTGTTAGTCACTCGGATATTGTGTATAGTGATATTTGTACCTGAGACTTGGTGAACCAATACTTCGTAAAGACTTATTCTTACACAGACAAAAAAGAGGAAGAAG

mRNA sequence

ATATACCCTTTGTGAGAACCCGCTGAACAACTCTTCTTTTTGCCTGATCGAACCATTTCAACTGCATAGCGGGAATCTCTATGCTCTGATAGATCACAGTTTTTCTCGCTCTCTCTCTCTCTATCTTTCTCTCTGTTTCTCTCTGCAAGACAAAGCCACCGGAAGCAATGGCGTCGTCGGCAGCTAGGATTACGTTTCGCGTTGTCATGGTGGTAGTCCTCCTCCTCGTCATTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGCCGGAACAAACAGACCGTCAAAGAAGGTTTCTCTCAAATCGTTCTTGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGGAGCTGATGGAAAGAAGGCTGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTCGTGAAAATCTCAGTTATTTGAATTGTGATTAGTCCTGAGAATTGAATGGTTTCATATGCATTAGTAAAGATAAATCAACGGATCTGGTTTTGTTTTGTTTTTGTTTTGTCGTAATAAAGTGATATAATGACTGAAGTAGCAACTATTGAATTAGTTTAGTTAAGAAACCGCAATGCTTCAGCGTTCAGCCTTCAGTGTTGCCACTATGCATTGTTAGTCACTCGGATATTGTGTATAGTGATATTTGTACCTGAGACTTGGTGAACCAATACTTCGTAAAGACTTATTCTTACACAGACAAAAAAGAGGAAGAAG

Coding sequence (CDS)

ATGGCGTCGTCGGCAGCTAGGATTACGTTTCGCGTTGTCATGGTGGTAGTCCTCCTCCTCGTCATTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGCCGGAACAAACAGACCGTCAAAGAAGGTTTCTCTCAAATCGTTCTTGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGGAGCTGATGGAAAGAAGGCTGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTCGTGA

Protein sequence

MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQKSVGWYHDESDSGVHDGADGKKAGSVAARRLLHQVS
Homology
[Close]
BLAST of Cp4.1LG17g01020 vs. TrEMBL
Match: A0A0A0KBE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067370 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 7.6e-39
Identity = 84/94 (89.36%), Postives = 89/94 (94.68%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQV 95
          SVGWYHDESDSGVHDG DGKKAGS A RRLLHQV
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQV 94

[Close]
BLAST of Cp4.1LG17g01020 vs. TrEMBL
Match: W9S2S8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011283 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-28
Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFR+ MVV++LL+ FYVGRPLYWKISATVHDIR+NKQTVKEG SQIV+EAQ+
Sbjct: 1  MASSTAKITFRIAMVVLVLLLFFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVMEAQR 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRL 91
          +VGWYHDESDSG  +G  GK   S  +R+L
Sbjct: 61 TVGWYHDESDSGAREGRFGKNLRSATSRKL 90

[Close]
BLAST of Cp4.1LG17g01020 vs. TrEMBL
Match: M5XMT6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013919mg PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.6e-28
Identity = 67/96 (69.79%), Postives = 79/96 (82.29%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASSAARITFR++++ ++LLV+FYVGRPLYWKISAT+H+IR NKQTV++G S+IVLEAQK
Sbjct: 1  MASSAARITFRILIIALVLLVLFYVGRPLYWKISATIHEIRENKQTVQQGLSKIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARR-LLHQVS 96
          SVGWYHDESDSG       K  G    RR LLHQVS
Sbjct: 61 SVGWYHDESDSGSRVNRVAKNVGLATTRRLLLHQVS 96

[Close]
BLAST of Cp4.1LG17g01020 vs. TrEMBL
Match: A0A059B408_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03661 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-27
Identity = 63/95 (66.32%), Postives = 82/95 (86.32%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MAS  A+++FRV++ VV +LV+FYVGRPLYWKISATVH+IR NKQTV++GFS+IV EAQK
Sbjct: 1  MASPGAKVSFRVLLAVVAILVLFYVGRPLYWKISATVHEIRENKQTVQQGFSRIVYEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQVS 96
          SVGW+HDESDSGV    + ++AG+ A+RRLL +V+
Sbjct: 61 SVGWFHDESDSGVR---EDRRAGASASRRLLREVN 92

[Close]
BLAST of Cp4.1LG17g01020 vs. TrEMBL
Match: A0A0D2UVA1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G183300 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-26
Identity = 64/94 (68.09%), Postives = 79/94 (84.04%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASS +RITFR+V+ ++LLL +FYVGRPLYWKISAT+HDIR NKQTV++G SQI+LEAQK
Sbjct: 1  MASSTSRITFRIVIALLLLLALFYVGRPLYWKISATIHDIRHNKQTVQQGISQIMLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQV 95
          SVGW+ DESDSGVH+    K +   A+RRLL +V
Sbjct: 61 SVGWFTDESDSGVHE----KTSKQAASRRLLFRV 90

[Close]
BLAST of Cp4.1LG17g01020 vs. TAIR10
Match: AT5G18850.1 (AT5G18850.1 unknown protein)

HSP 1 Score: 120.2 bits (300), Expect = 7.1e-28
Identity = 59/90 (65.56%), Postives = 73/90 (81.11%), Query Frame = 1 

Query: 2  ASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQKS 61
          +S   RI FR V+++ L++V+FYVGRPLYWKISAT+HDIR NKQ+V+EG SQIV EAQ+S
Sbjct: 6  SSPTTRIWFRTVILIALMVVLFYVGRPLYWKISATIHDIRHNKQSVREGISQIVHEAQRS 65

Query: 62 VGWYHDESDSGVHDGADGKKAGSVAARRLL 92
          VGWYHDESDSG  +G   KK+G   +RRLL
Sbjct: 66 VGWYHDESDSGFREG-HNKKSGIAVSRRLL 94

[Close]
BLAST of Cp4.1LG17g01020 vs. NCBI nr
Match: gi|700190975|gb|KGN46179.1| (hypothetical protein Csa_6G067370 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-38
Identity = 84/94 (89.36%), Postives = 89/94 (94.68%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQV 95
          SVGWYHDESDSGVHDG DGKKAGS A RRLLHQV
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQV 94

[Close]
BLAST of Cp4.1LG17g01020 vs. NCBI nr
Match: gi|659117275|ref|XP_008458514.1| (PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo])

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-38
Identity = 84/94 (89.36%), Postives = 89/94 (94.68%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQV 95
          SVGWYHDESDSGV DG DGKKAGSVA RRLLHQV
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQV 94

[Close]
BLAST of Cp4.1LG17g01020 vs. NCBI nr
Match: gi|778710947|ref|XP_011656653.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 2.4e-38
Identity = 83/94 (88.30%), Postives = 89/94 (94.68%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQV 95
          SVGWYHDESDSGVHDG DGKKAGS A RRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQM 94

[Close]
BLAST of Cp4.1LG17g01020 vs. NCBI nr
Match: gi|659117279|ref|XP_008458516.1| (PREDICTED: uncharacterized protein LOC103497900 isoform X3 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 3.2e-38
Identity = 83/94 (88.30%), Postives = 89/94 (94.68%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQV 95
          SVGWYHDESDSGV DG DGKKAGSVA RRLLHQ+
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQM 94

[Close]
BLAST of Cp4.1LG17g01020 vs. NCBI nr
Match: gi|778710941|ref|XP_011656651.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 3.2e-38
Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 1 

Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRRNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIR+NKQTVKEG SQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGADGKKAGSVAARRLLHQ 94
          SVGWYHDESDSGVHDG DGKKAGS A RRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g01020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g01020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBE9_CUCSA7.6e-3989.36Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067370 PE=4 SV=1[more]
W9S2S8_9ROSA1.2e-2872.22Uncharacterized protein OS=Morus notabilis GN=L484_011283 PE=4 SV=1[more]
M5XMT6_PRUPE4.6e-2869.79Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013919mg PE=4 SV=1[more]
A0A059B408_EUCGR5.1e-2766.32Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03661 PE=4 SV=1[more]
A0A0D2UVA1_GOSRA1.1e-2668.09Uncharacterized protein OS=Gossypium raimondii GN=B456_011G183300 PE=4 SV=1[more]
BLAST of Cp4.1LG17g01020 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G18850.17.1e-2865.56 unknown protein[more]
BLAST of Cp4.1LG17g01020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190975|gb|KGN46179.1|1.1e-3889.36hypothetical protein Csa_6G067370 [Cucumis sativus][more]
gi|659117275|ref|XP_008458514.1|1.4e-3889.36PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo][more]
gi|778710947|ref|XP_011656653.1|2.4e-3888.30PREDICTED: uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus][more]
gi|659117279|ref|XP_008458516.1|3.2e-3888.30PREDICTED: uncharacterized protein LOC103497900 isoform X3 [Cucumis melo][more]
gi|778710941|ref|XP_011656651.1|3.2e-3889.25PREDICTED: uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006661 phosphatidylinositol biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g01020.1Cp4.1LG17g01020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g01020Cucsa.363380Cucumber (Gy14) v1cgycpeB0955
Cp4.1LG17g01020CmaCh17G002940Cucurbita maxima (Rimu)cmacpeB388
Cp4.1LG17g01020CmoCh08G011660Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g01020CmoCh17G002810Cucurbita moschata (Rifu)cmocpeB351
Cp4.1LG17g01020Cla009351Watermelon (97103) v1cpewmB334
Cp4.1LG17g01020Csa6G067370Cucumber (Chinese Long) v2cpecuB325
Cp4.1LG17g01020MELO3C021378Melon (DHL92) v3.5.1cpemeB289
Cp4.1LG17g01020ClCG06G005560Watermelon (Charleston Gray)cpewcgB294
Cp4.1LG17g01020CSPI06G05270Wild cucumber (PI 183967)cpecpiB326
Cp4.1LG17g01020Lsi09G013820Bottle gourd (USVL1VR-Ls)cpelsiB254
Cp4.1LG17g01020MELO3C021378.2Melon (DHL92) v3.6.1cpemedB337
Cp4.1LG17g01020CsaV3_6G005600Cucumber (Chinese Long) v3cpecucB0406
Cp4.1LG17g01020Bhi12G001570Wax gourdcpewgoB0378
Cp4.1LG17g01020Carg15949Silver-seed gourdcarcpeB0453
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG17g01020Cp4.1LG12g02490Cucurbita pepo (Zucchini)cpecpeB169
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g01020Wax gourdcpewgoB0401
Cp4.1LG17g01020Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG17g01020Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG17g01020Cucumber (Gy14) v1cgycpeB0676
Cp4.1LG17g01020Cucurbita maxima (Rimu)cmacpeB268
Cp4.1LG17g01020Cucurbita maxima (Rimu)cmacpeB824
Cp4.1LG17g01020Cucurbita maxima (Rimu)cmacpeB916
Cp4.1LG17g01020Cucurbita moschata (Rifu)cmocpeB230
Cp4.1LG17g01020Wild cucumber (PI 183967)cpecpiB312
Cp4.1LG17g01020Cucumber (Chinese Long) v2cpecuB310
Cp4.1LG17g01020Bottle gourd (USVL1VR-Ls)cpelsiB273
Cp4.1LG17g01020Watermelon (97103) v1cpewmB331
Cp4.1LG17g01020Cucumber (Gy14) v2cgybcpeB354
Cp4.1LG17g01020Cucumber (Gy14) v2cgybcpeB786
Cp4.1LG17g01020Melon (DHL92) v3.6.1cpemedB371
Cp4.1LG17g01020Silver-seed gourdcarcpeB0104
Cp4.1LG17g01020Cucumber (Chinese Long) v3cpecucB0385