CsaV3_6G005600 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G005600
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionLow-density receptor-like protein
Locationchr6 : 4796322 .. 4797890 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTAAACTGCGAAACAACACTGCCCATAAGAGACAAAAATGTGAAATAGAAACAGCGATAAATACCAATGAGAAAACTCCGAGCTTCTCTTCTTCTTGCCTGATCTAACCATTTCAACTCCATCGCGGGAATCTCTGAGCTCTCTCTCTCTCTCTCTCTATCTATCTCTTTCTTCTAGACATAGCCACCGGAAACAATGGCGTCGTCGACGGCTAAGATTACGTTTCGTGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCTACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGTGCGTTAATTGAATGCTAAATCTGTATGTTTATGCTTGTCTCAGTTCTGACTTAGAGTTTGAATTCTTCGTTCTGGACCTGCATTTCAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCATGATGAGTCGGACTCGGGCGTTCATGATGGAAATGATGGAAAGAAAGCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGGTTTTGTGAAAATCTTAGTTATTTGAATTGTGATTAGTCCTGGAGAATTGAATTGTTTCACATGCATTAGTAAAGTTCAATTAGCGGATCTGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCCTTAATAACGTGTGTTATAATGACTGAATTAGCACCTACTGAATCTATTTAGTTAAAGGAAGGCAAAAAAAAAAAAAAAAAAAGATGAAGAAATCGTAATGCTTCGGCGTTCAGTCTTCACCGTTTCCATTATGCATCGTTAGTCACTCGGATGTGTGGATAGTGATATTTGTACTTAGATGTGGTGACCTACTGCTTGCGAAAACTCATTTTGACACACACACACACAAAAGAAAAAAAAAGAAGAAGATATTGTTAGTTTGTATCGAGCGGAATTGGCTGATAATGTGAATTGGAATTTTGTAGTTTAAGACTGAATGTTTGGTAAAGGTGGAAATGCGTACATAGGATGATGAACTAAAGATGACAATGGCCTTTTGTAATGGTTTTTGTTACTGTGAGTCCGTGACGGGCTAATTGGGCATTCTGGTGCTGAAGGAGCGATTTGAAACAAAATCAACTAATTGAAGTATAATGGAGAAGGCTTCAATAAAAAGATTGTACAAAATAATGATGGATGCCTCTGAACCTTTCTAGATAGATCCAAGACTTGGTGGAGCTGTAGTTAACCATAAAAACCCATAATGCCCTGCTGTTTAATCATGTTTCCTTGTGCTTTTTATTCATAAGCTCAAATGCAGCAACCATGACAAATCTTACTTGGCAGTGTGCCCTTCACTTGTGGCAACTCCCAAGTCCTAATGGTGAAATTAGTAGTTGCCTTTGTATACCTATCTCATCTCGTCCTCATAAACATGAGAAGGGAGATGAGAAAGGAATTCCTGCAGAATGTTTACACATAGATATGATAATCATGTCTGCATATGTGACAGTCTGATGTAACGTGGTTTTCTGTAGGAACATACACGCTAAAAT

mRNA sequence

ATGGCGTCGTCGACGGCTAAGATTACGTTTCGTGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCTACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCATGATGAGTCGGACTCGGGCGTTCATGATGGAAATGATGGAAAGAAAGCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGTTTAAGACTGAATGTTTGGTAAAGGTGGAAATGCGTACATAG

Coding sequence (CDS)

ATGGCGTCGTCGACGGCTAAGATTACGTTTCGTGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCTACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCATGATGAGTCGGACTCGGGCGTTCATGATGGAAATGATGGAAAGAAAGCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGTTTAAGACTGAATGTTTGGTAAAGGTGGAAATGCGTACATAG

Protein sequence

MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFKTECLVKVEMRT
Homology
[Close]
BLAST of CsaV3_6G005600 vs. NCBI nr
Match: XP_011656652.1 (PREDICTED: uncharacterized protein LOC101217077 isoform X2 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 7.2e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
           MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1   MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61  SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFKTECLVKVEMRT 107
           SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFKTECLVKVEMRT
Sbjct: 61  SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFKTECLVKVEMRT 106

[Close]
BLAST of CsaV3_6G005600 vs. NCBI nr
Match: KGN46179.1 (hypothetical protein Csa_6G067370 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 9.4e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]
BLAST of CsaV3_6G005600 vs. NCBI nr
Match: XP_011656651.1 (PREDICTED: uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 9.4e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]
BLAST of CsaV3_6G005600 vs. NCBI nr
Match: XP_011656653.1 (PREDICTED: uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 9.4e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]
BLAST of CsaV3_6G005600 vs. NCBI nr
Match: XP_008458514.1 (PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 2.3e-41
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFK 96
          SVGWYHDESDSGV DGNDGKKAGS AIRRLLHQ K
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQVK 95

[Close]
BLAST of CsaV3_6G005600 vs. TAIR10
Match: AT5G18850.1 (unknown protein)

HSP 1 Score: 122.1 bits (305), Expect = 2.1e-28
Identity = 59/90 (65.56%), Postives = 76/90 (84.44%), Query Frame = 0 

Query: 2  ASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKS 61
          +S T +I FR ++++ L++VLFYVGRPLYWKISAT+HDIR NKQ+V+EG+SQIV EAQ+S
Sbjct: 6  SSPTTRIWFRTVILIALMVVLFYVGRPLYWKISATIHDIRHNKQSVREGISQIVHEAQRS 65

Query: 62 VGWYHDESDSGVHDGNDGKKAGSGAIRRLL 92
          VGWYHDESDSG  +G++ KK+G    RRLL
Sbjct: 66 VGWYHDESDSGFREGHN-KKSGIAVSRRLL 94

[Close]
BLAST of CsaV3_6G005600 vs. TrEMBL
Match: tr|A0A0A0KBE9|A0A0A0KBE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067370 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.2e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]
BLAST of CsaV3_6G005600 vs. TrEMBL
Match: tr|A0A1S3C994|A0A1S3C994_CUCME (uncharacterized protein LOC103497900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497900 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-41
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFK 96
          SVGWYHDESDSGV DGNDGKKAGS AIRRLLHQ K
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQVK 95

[Close]
BLAST of CsaV3_6G005600 vs. TrEMBL
Match: tr|A0A1S3C7I8|A0A1S3C7I8_CUCME (uncharacterized protein LOC103497900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497900 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.8e-41
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGV DGNDGKKAGS AIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQ 93

[Close]
BLAST of CsaV3_6G005600 vs. TrEMBL
Match: tr|A0A2P5FX71|A0A2P5FX71_9ROSA (Low-density receptor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_021490 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.4e-32
Identity = 74/97 (76.29%), Postives = 85/97 (87.63%), Query Frame = 0 

Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAK+TFR+ MVV++ LVLFYVGRPLYWKISAT+HDIRQNKQTVK+G+SQIV+EAQ+
Sbjct: 1  MASSTAKVTFRIAMVVLVFLVLFYVGRPLYWKISATIHDIRQNKQTVKQGISQIVMEAQR 60

Query: 61 SVGWYHDESDSGVHDGND--GKKAGSGAIRRL--LHQ 94
          +VGWYHDESDSGVHD     GKKAGS   R+L  LHQ
Sbjct: 61 TVGWYHDESDSGVHDHESRVGKKAGSATNRKLMMLHQ 97

[Close]
BLAST of CsaV3_6G005600 vs. TrEMBL
Match: tr|A0A2P5E3Y7|A0A2P5E3Y7_PARAD (Low-density receptor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_007030 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.4e-32
Identity = 74/97 (76.29%), Postives = 85/97 (87.63%), Query Frame = 0 

Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAK+TFR+ MVV++ LVLFYVGRPLYWKISAT+HDIRQNKQTVK+G+SQIV+EAQ+
Sbjct: 1  MASSTAKVTFRIAMVVLVFLVLFYVGRPLYWKISATIHDIRQNKQTVKQGISQIVMEAQR 60

Query: 61 SVGWYHDESDSGVHDGND--GKKAGSGAIRRL--LHQ 94
          +VGWYHDESDSGVHD     GKKAGS   R+L  LHQ
Sbjct: 61 TVGWYHDESDSGVHDHESGVGKKAGSATNRKLMMLHQ 97

The following BLAST results are available for this feature:
BLAST of CsaV3_6G005600 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011656652.17.2e-51100.00PREDICTED: uncharacterized protein LOC101217077 isoform X2 [Cucumis sativus][more]
KGN46179.19.4e-43100.00hypothetical protein Csa_6G067370 [Cucumis sativus][more]
XP_011656651.19.4e-43100.00PREDICTED: uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus][more]
XP_011656653.19.4e-43100.00PREDICTED: uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus][more]
XP_008458514.12.3e-4196.84PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo][more]
BLAST of CsaV3_6G005600 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G18850.12.1e-2865.56unknown protein[more]
BLAST of CsaV3_6G005600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G005600 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KBE9|A0A0A0KBE9_CUCSA6.2e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067370 PE=4 SV=1[more]
tr|A0A1S3C994|A0A1S3C994_CUCME1.5e-4196.84uncharacterized protein LOC103497900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3C7I8|A0A1S3C7I8_CUCME5.8e-4197.85uncharacterized protein LOC103497900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A2P5FX71|A0A2P5FX71_9ROSA8.4e-3276.29Low-density receptor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_021... [more]
tr|A0A2P5E3Y7|A0A2P5E3Y7_PARAD8.4e-3276.29Low-density receptor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006661 phosphatidylinositol biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G005600.1CsaV3_6G005600.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G005600CSPI06G05270Wild cucumber (PI 183967)cpicucB364
CsaV3_6G005600Cucsa.363380Cucumber (Gy14) v1cgycucB556
CsaV3_6G005600CmaCh17G002940Cucurbita maxima (Rimu)cmacucB0442
CsaV3_6G005600CmoCh17G002810Cucurbita moschata (Rifu)cmocucB0435
CsaV3_6G005600CmoCh08G011660Cucurbita moschata (Rifu)cmocucB1048
CsaV3_6G005600Cp4.1LG12g02490Cucurbita pepo (Zucchini)cpecucB0168
CsaV3_6G005600Cp4.1LG17g01020Cucurbita pepo (Zucchini)cpecucB0406
CsaV3_6G005600Carg15949Silver-seed gourdcarcucB0356
CsaV3_6G005600Cla009351Watermelon (97103) v1cucwmB571
CsaV3_6G005600MELO3C021378Melon (DHL92) v3.5.1cucmeB433
CsaV3_6G005600ClCG06G005560Watermelon (Charleston Gray)cucwcgB503
CsaV3_6G005600Lsi09G013820Bottle gourd (USVL1VR-Ls)cuclsiB419
CsaV3_6G005600MELO3C021378.2Melon (DHL92) v3.6.1cucmedB423
CsaV3_6G005600Cla97C06G115070Watermelon (97103) v2cucwmbB493
CsaV3_6G005600Bhi12G001570Wax gourdcucwgoB563
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G005600Cucumber (Chinese Long) v3cuccucB141
CsaV3_6G005600Silver-seed gourdcarcucB0082
CsaV3_6G005600Silver-seed gourdcarcucB0641
CsaV3_6G005600Cucumber (Gy14) v2cgybcucB145
CsaV3_6G005600Cucumber (Gy14) v2cgybcucB298
CsaV3_6G005600Cucumber (Gy14) v1cgycucB399
CsaV3_6G005600Cucurbita maxima (Rimu)cmacucB0316
CsaV3_6G005600Cucurbita maxima (Rimu)cmacucB1066
CsaV3_6G005600Cucurbita moschata (Rifu)cmocucB0310
CsaV3_6G005600Cucurbita moschata (Rifu)cmocucB0984
CsaV3_6G005600Cucurbita pepo (Zucchini)cpecucB0787
CsaV3_6G005600Cucurbita pepo (Zucchini)cpecucB1081
CsaV3_6G005600Wild cucumber (PI 183967)cpicucB182
CsaV3_6G005600Bottle gourd (USVL1VR-Ls)cuclsiB489
CsaV3_6G005600Melon (DHL92) v3.5.1cucmeB508
CsaV3_6G005600Melon (DHL92) v3.6.1cucmedB494
CsaV3_6G005600Watermelon (Charleston Gray)cucwcgB492
CsaV3_6G005600Watermelon (97103) v1cucwmB519
CsaV3_6G005600Watermelon (97103) v2cucwmbB479
CsaV3_6G005600Wax gourdcucwgoB575