Carg15949 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15949
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Low-density receptor-like protein
Location	Cucurbita_argyrosperma_scaffold_080 : 756459 .. 757044 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAATCATTAAATGGAAAAATAGAAACAGATATTTTTTTCCGATATATATATACCCTTTGTGAGAACCCGCTGAACAACTCTTCCTTTTGCCTGATCGAACCATTTCAACTGCATAGCGGGAATCTCTATGCTCTGGTAGATCACAGTTTTTCTCGCTCTCTTTCTCTCTGTTTCTCTCTGTTTCTCTCTGCAAGACAAAGCCACCGGAAGCAATGGCGTCGTCGGCAGCTAGGATTACGTTTCGCGTTGTCATGGTGGTAGTCCTCCTCCTCGTCATTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGCCAGAACAAACAGACCGTCAAAGAAGGTGCGTTTAATTTGATGTGAAATTTGTATGTTTATGCTTGCCGGTGATTTGAAATGGAGTTTCAATTCTTTGTGTTGGACCTGCATTTCAGGTTTCTCTCAAATCGTTCTTGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGGAACTGATGGAAAGAAGGCTGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAG

mRNA sequence

AAAAAAATCATTAAATGGAAAAATAGAAACAGATATTTTTTTCCGATATATATATACCCTTTGTGAGAACCCGCTGAACAACTCTTCCTTTTGCCTGATCGAACCATTTCAACTGCATAGCGGGAATCTCTATGCTCTGGTAGATCACAGTTTTTCTCGCTCTCTTTCTCTCTGTTTCTCTCTGTTTCTCTCTGCAAGACAAAGCCACCGGAAGCAATGGCGTCGTCGGCAGCTAGGATTACGTTTCGCGTTGTCATGGTGGTAGTCCTCCTCCTCGTCATTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGCCAGAACAAACAGACCGTCAAAGAAGGTTTCTCTCAAATCGTTCTTGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGGAACTGATGGAAAGAAGGCTGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAG

Coding sequence (CDS)

ATGGCGTCGTCGGCAGCTAGGATTACGTTTCGCGTTGTCATGGTGGTAGTCCTCCTCCTCGTCATTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGCCAGAACAAACAGACCGTCAAAGAAGGTTTCTCTCAAATCGTTCTTGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCATGATGGAACTGATGGAAAGAAGGCTGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAG

Protein sequence

MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQKSVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ

Homology

[Close]

BLAST of Carg15949 vs. NCBI nr
Match: XP_022930338.1 (uncharacterized protein LOC111436812 isoform X3 [Cucurbita moschata])

HSP 1 Score: 181.4 bits (459), Expect = 1.4e-42
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60
          MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 94
          SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 93

[Close]

BLAST of Carg15949 vs. NCBI nr
Match: XP_022930339.1 (uncharacterized protein LOC111436812 isoform X4 [Cucurbita moschata])

HSP 1 Score: 181.4 bits (459), Expect = 1.4e-42
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60
          MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 94
          SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 93

[Close]

BLAST of Carg15949 vs. NCBI nr
Match: XP_022930340.1 (uncharacterized protein LOC111436812 isoform X5 [Cucurbita moschata])

HSP 1 Score: 181.4 bits (459), Expect = 1.4e-42
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60
          MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 94
          SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 93

[Close]

BLAST of Carg15949 vs. NCBI nr
Match: XP_022930337.1 (uncharacterized protein LOC111436812 isoform X2 [Cucurbita moschata])

HSP 1 Score: 181.4 bits (459), Expect = 1.4e-42
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60
          MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 94
          SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 93

[Close]

BLAST of Carg15949 vs. NCBI nr
Match: XP_022930336.1 (uncharacterized protein LOC111436812 isoform X1 [Cucurbita moschata])

HSP 1 Score: 181.4 bits (459), Expect = 1.4e-42
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60
          MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 94
          SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 93

[Close]

BLAST of Carg15949 vs. TAIR10
Match: AT5G18850.1 (unknown protein)

HSP 1 Score: 120.2 bits (300), Expect = 6.9e-28
Identity = 59/90 (65.56%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 2  ASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQKS 61
          +S   RI FR V+++ L++V+FYVGRPLYWKISAT+HDIR NKQ+V+EG SQIV EAQ+S
Sbjct: 6  SSPTTRIWFRTVILIALMVVLFYVGRPLYWKISATIHDIRHNKQSVREGISQIVHEAQRS 65

Query: 62 VGWYHDESDSGVHDGTDGKKAGSVAARRLL 92
          VGWYHDESDSG  +G   KK+G   +RRLL
Sbjct: 66 VGWYHDESDSGFREG-HNKKSGIAVSRRLL 94

[Close]

BLAST of Carg15949 vs. TrEMBL
Match: tr|A0A0A0KBE9|A0A0A0KBE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067370 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 8.1e-39
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 94
          SVGWYHDESDSGVHDG DGKKAGS A RRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]

BLAST of Carg15949 vs. TrEMBL
Match: tr|A0A1S3C994|A0A1S3C994_CUCME (uncharacterized protein LOC103497900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497900 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-38
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 94
          SVGWYHDESDSGV DG DGKKAGSVA RRLLHQ
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQ 93

[Close]

BLAST of Carg15949 vs. TrEMBL
Match: tr|A0A1S3C7I8|A0A1S3C7I8_CUCME (uncharacterized protein LOC103497900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497900 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-38
Identity = 84/93 (90.32%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60
          MASS A+ITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQ 94
          SVGWYHDESDSGV DG DGKKAGSVA RRLLHQ
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQ 93

[Close]

BLAST of Carg15949 vs. TrEMBL
Match: tr|A0A2I4G9J0|A0A2I4G9J0_9ROSI (uncharacterized protein LOC109005931 OS=Juglans regia OX=51240 GN=LOC109005931 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.1e-31
Identity = 67/91 (73.63%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60
          MASS AR++FR++M V+LLL++FYVGRPLYWKISAT+HDIRQNKQTVK+G SQIVLEAQK
Sbjct: 1  MASSIARVSFRILMAVLLLLLLFYVGRPLYWKISATIHDIRQNKQTVKQGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLL 92
          SVGWYHDESDSGVH+   G K G+  + R+L
Sbjct: 61 SVGWYHDESDSGVHEDRTGSKVGAATSHRIL 91

[Close]

BLAST of Carg15949 vs. TrEMBL
Match: tr|A0A2P5FX71|A0A2P5FX71_9ROSA (Low-density receptor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_021490 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-30
Identity = 71/97 (73.20%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60
          MASS A++TFR+ MVV++ LV+FYVGRPLYWKISAT+HDIRQNKQTVK+G SQIV+EAQ+
Sbjct: 1  MASSTAKVTFRIAMVVLVFLVLFYVGRPLYWKISATIHDIRQNKQTVKQGISQIVMEAQR 60

Query: 61 SVGWYHDESDSGVHDGTD--GKKAGSVAARRL--LHQ 94
          +VGWYHDESDSGVHD     GKKAGS   R+L  LHQ
Sbjct: 61 TVGWYHDESDSGVHDHESRVGKKAGSATNRKLMMLHQ 97

The following BLAST results are available for this feature:

BLAST of Carg15949 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930338.1	1.4e-42	100.00	uncharacterized protein LOC111436812 isoform X3 [Cucurbita moschata]	[more]
XP_022930339.1	1.4e-42	100.00	uncharacterized protein LOC111436812 isoform X4 [Cucurbita moschata]	[more]
XP_022930340.1	1.4e-42	100.00	uncharacterized protein LOC111436812 isoform X5 [Cucurbita moschata]	[more]
XP_022930337.1	1.4e-42	100.00	uncharacterized protein LOC111436812 isoform X2 [Cucurbita moschata]	[more]
XP_022930336.1	1.4e-42	100.00	uncharacterized protein LOC111436812 isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg15949 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18850.1	6.9e-28	65.56	unknown protein	[more]

BLAST of Carg15949 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15949 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBE9\|A0A0A0KBE9_CUCSA	8.1e-39	90.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067370 PE=4 SV=1	[more]
tr\|A0A1S3C994\|A0A1S3C994_CUCME	1.1e-38	90.32	uncharacterized protein LOC103497900 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3C7I8\|A0A1S3C7I8_CUCME	1.1e-38	90.32	uncharacterized protein LOC103497900 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2I4G9J0\|A0A2I4G9J0_9ROSI	8.1e-31	73.63	uncharacterized protein LOC109005931 OS=Juglans regia OX=51240 GN=LOC109005931 P...	[more]
tr\|A0A2P5FX71\|A0A2P5FX71_9ROSA	1.8e-30	73.20	Low-density receptor-like protein OS=Trema orientalis OX=63057 GN=TorRG33x02_021...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15949-RA	Carg15949-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15949	Cla009351	Watermelon (97103) v1	carwmB0317
Carg15949	Csa6G067370	Cucumber (Chinese Long) v2	carcuB0351
Carg15949	MELO3C021378	Melon (DHL92) v3.5.1	carmeB0327
Carg15949	ClCG06G005560	Watermelon (Charleston Gray)	carwcgB0318
Carg15949	CSPI06G05270	Wild cucumber (PI 183967)	carcpiB0356
Carg15949	Cucsa.363380	Cucumber (Gy14) v1	carcgyB0384
Carg15949	CmaCh17G002940	Cucurbita maxima (Rimu)	carcmaB0455
Carg15949	CmoCh08G011660	Cucurbita moschata (Rifu)	carcmoB0449
Carg15949	CmoCh17G002810	Cucurbita moschata (Rifu)	carcmoB0446
Carg15949	Lsi09G013820	Bottle gourd (USVL1VR-Ls)	carlsiB296
Carg15949	Cp4.1LG17g01020	Cucurbita pepo (Zucchini)	carcpeB0453
Carg15949	Cp4.1LG12g02490	Cucurbita pepo (Zucchini)	carcpeB0450
Carg15949	MELO3C021378.2	Melon (DHL92) v3.6.1	carmedB0336
Carg15949	CsaV3_6G005600	Cucumber (Chinese Long) v3	carcucB0356
Carg15949	Cla97C06G115070	Watermelon (97103) v2	carwmbB0334
Carg15949	Bhi12G001570	Wax gourd	carwgoB0408

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15949	Silver-seed gourd	carcarB080
Carg15949	Silver-seed gourd	carcarB347
Carg15949	Cucumber (Gy14) v2	carcgybB0333
Carg15949	Cucumber (Gy14) v2	carcgybB0334
Carg15949	Cucumber (Gy14) v1	carcgyB0383
Carg15949	Cucurbita maxima (Rimu)	carcmaB0453
Carg15949	Cucurbita maxima (Rimu)	carcmaB0457
Carg15949	Cucurbita maxima (Rimu)	carcmaB0458
Carg15949	Cucurbita moschata (Rifu)	carcmoB0444
Carg15949	Cucurbita moschata (Rifu)	carcmoB0448
Carg15949	Cucurbita pepo (Zucchini)	carcpeB0454
Carg15949	Cucurbita pepo (Zucchini)	carcpeB0456
Carg15949	Wild cucumber (PI 183967)	carcpiB0355
Carg15949	Cucumber (Chinese Long) v2	carcuB0350
Carg15949	Cucumber (Chinese Long) v3	carcucB0355
Carg15949	Bottle gourd (USVL1VR-Ls)	carlsiB298
Carg15949	Melon (DHL92) v3.5.1	carmeB0332
Carg15949	Melon (DHL92) v3.6.1	carmedB0340
Carg15949	Watermelon (Charleston Gray)	carwcgB0317
Carg15949	Watermelon (97103) v1	carwmB0316
Carg15949	Watermelon (97103) v2	carwmbB0333
Carg15949	Wax gourd	carwgoB0411