Cp4.1LG12g02490 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g02490
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionLow-density lipoprotein receptor-related
LocationCp4.1LG12 : 1640170 .. 1645506 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAAGCACGGAGCTTCTTTTCTTTTTGCCTGATCTAACCATTTCAAGTGCATTGTGGGAATCTCTGAGCTCTGATAGATCACAGTCTCTGTTTCTCTGTTTCTCTCCACGAGACATAGCCACCGGAAACAATGGCGTCGTCGACGGCTAGGATTACGTTTCGCGTTGTTATGGTGGTGATTCTCCTCCTCGTCGTTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCAACTGTACATGATATTCGCCAGAACAAACAGACCGTCAAAGAAGGTGCGTTAATTGAATGATAAATATACGTTTATGTTTGTCTGAGCTTTGAATGGAGTTTGAATTCTTCGTTATGGACATGCATTTTAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCTGGCGTCCGTGAAGGAAATGATGGAAAGAATTCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGGTTTTGTGAAAATCTCAGTTATTTGAATTGCGATTAGTTCGGGATAATTGAATGGTTTCATATGCATTAGTAAAGNTTTTTTTTTTTTTTTTTTTTCTCGTAATAACGTAATAATGTAATAACGTGTTAATTAGCACCTACTGAGTCGATTTAGTTAAAGAAGGCTAAGAAAGGCTAAGAAAGGAAAAGAAATCGTAATGCTTCAACGTTCAGCCTTTAATGTTTCCATTATGCACTGTTAGTCACTCGGATATGTGGATAGTGATATTTGTACCTGACACATGGTGAACTACTGCTTACGAAAGACTCGTTCTGACAAGAAATTAGATAGTGTTAGTTTATAATGAGCGAAGTTGGCTGATATTGTGAATGAGAAATTTTAGTTTAAGACTGAATATTAGGTAGAGGTGGAAATGTGTACATAGGATGATAAGAACTAAAGATAGCAGTAGTCTTTTGTGATGGTTTGTGTGCAAATTTGGCATTCTGGTGCTGAAGGAGCAATTTCAAACAAAATCAACTGATTGAAGTATAACAGAGAAGGCTTCAATAAGAAAATTGTAGAAAACGATCGATACCTTTGAACTTGTCTAGATAGAACTACGACTTGGTGGATCTGTAGTTGACCATGAAAACAAAGCCATAATGCCCTACTGTCTTGGTAATCATGTTTCTTTGCTCTTTATTTATTTATTTTTATTCTTATTTTTTTATTCATAAGCTCAAATGCGGAAAATATCATAAATCTCACTTGGCAATAAGTTACAGTCCATGTGCAAAAATAATCTGTCCCTGTTGTCTGACTTGTGGTAACTTCTAATTATGAAATTAGTAGTTACCTTTCCCCAGGTCTTTGAATCAACTTATATACCTATCTCTTCTCGCCCTCGTAACCATGAGACAGGAGATGAGAAAGGAATTTCTGCAGAATGTTTGAGCAAATACATATGGCAATCATGTCTACAAACATGGCAGTCTATGTAGTGTTCTGTAGGAACGTACACACGAAATTAATTGTACTGAGTCTAGACTCTTTTCCCTAATCAAGTTAGAAAGAAACCTCTGACCCGAGACTTTACTCATCTTATGATCTTTCTTAGTTAATCAACCCTGTACCATGATAAAGGGTGACTAATATTTCAGAATTTGGATTTTGAATGAGCGAGCAAGCTATAATATCTTGGTTTCTAGGGGAATTGGAAGCATTTTGACCATTTTTAGTAGTCTGAAGTCTGAATTGGTTGAGCTGAACAGATCTGAATCTTTGCATAGTATTGTTCCCCTCTAAGATGACTCAATCTCACGGATCTCCATGAAAGGACTGCCGCTAGACTATGATGGATTTCTGAATTCTAACTTGATATTAAACATTATAACATAATGTAATGGAAGCTCAATTTTCTCCATCCTACTTCATAAAAATTTCAAACCAGTGGAGATTTTAAACTTTTTGCAGTTCCTGCAATCCGTCTTTCTTAATAATAACACAAAATAATCTTAAATGTGCTAACATACATCATGAACTCTCAACCAGATTGTTTGTCATGTTGTGGAAAACTTGGAACGAAGTTTTGCCTTGTTGAACAATATTGCTTGAGAAAAAATATTAAGAAGAAATATAGAATTTTGCAGCCTTGCTTGATGTTTAATCTGCTACTTCAAACATCACTTCAATAAAATCTTTTCCATGTAACTGAAGATACATTTTGTTTTGTTTTACTCAAGTTTTTAGAACGTTTGTGCTAAATTAGGAGTAGGAGAAGCCAAGTGGAAGGGGGAAGGAGTGGTTTAAAGTGTGCTAGAAATATTTCTTTGAAATGCTCACTATGATGCACAAATGCTAAGTATCCGTTCATAGACTTGGTGTTTATTTTTAATCCAAATTCATTGATAATTCCACCTAAATCATCAAGTATATCTGACACCGAGGTGTCATATGGAAACTCTTTACAAGAATCCATTACAATGTTCAACCATCCAAGAATTTCACCTTCCTCCTTAAGGGGAAGGTTACACTCTTCAAGATTAAAATCCTTTTTTCAGATAAATTATCATAATCTTTCTCCAAAGAGGGGCAGGAAAAGTGCATCCTCTTGCTCTCTCAAGGTATAAATCATTTTTCTTTTACCAGGGCTCATCGACTTGCTTAGGTTAGTCTCTGATCTAGTATTAATGTTCACTATTGGGATTACGTAGTTGAAAATTATGTATGTAACCGCACATTTGGTATGACACCCCTGTAAAACCGGCCGTAGAAAACCTCTCCCAATTGTCTAATCAATGTGGAAAAGGAACACTCGGACACACGTGGTAGAGCTTTTACTTACCTTTAAAATCAACTTGAAAAAGAGAGTCCTCAAATATTTATAAAAAGCCAGTTCTTGTTGTTCACAATGTGGAACTCCATCGGAATCTTTACATACAACCTTCGTTTAACATTGACGTCACACAGGAAAGTGGCATGGTTTAGAAAATACTTCCTCGCTCCTATCCAAAGAAAATACCTCCTCACGCAATAAACTTTCATAGAGATCTCATCAAACAGAAGAACAATAATGTCCCAAGGACCCCAAGAAAATGGAAAAACGACACCCCCATCAACTGTGGCTCTAGGAAGTATTCTCTCACATTCGACTTAGAATATCAATTCTGTTGTAGGGATCGACCCACCAGCAGCCACAATTTGTTGCTCCATCTGCAATTAACAATTTAAGGTATAAATCCTTTGAAATTATGAAGGATCTGCTAGTTTTTTTAACAACAGTCTATGTACTGTTTTGTCTGTCCTTGTACATTTTTTTTAAGTTTCTCTCAATGCTCAGTTTCTTACCCAAAATGATGATAATAATAATAACAGTCTTATGTACTGACCCTGAATAGATTCTCAAGCTTGTTTTTCACGAGGCAGATCTCTTGCTTTAATTGTTGTAGACATCTCAGGCACCTGCACCCACAATTTTCATTGTTTTCATAAGCTGATTTTATTCACTATCGCACATATGTTGCAGGAGCTTATCTAGAAAAACTTTTGATTTTGTTTTACTAACTCTAGGGCCAAAATAATGATTAAAAAGAAAGTTTGATAATGATGAAAGTATTTCATGGTAAAACATTGAGGTTTTAAATGTTAAAAAAACCAAATTAGGAAGTAGGTAAAAGCTCTAGTTCCAAGAATGAACTTCAAAAATTTAGGGACCTAGGTAAAATTCAAGAATCAAAACCCTACTTGAACCTAAGCATCATCATATGAACCCAGCTTAGCCTTTAGTAAATAAGAACTCACCCTTCAATGTTCTGTTCCTCACAGAAGCTGCGCATGGTAATACAGACATTTTTAACTCTCTGTGCACCTATGCTGTCAATCACAAAAGTTACAGAATTCTTCATTCAGTTGATTTTCGGTTCTAAAATTGATCATCTTTTTTAGATTACTATTTAGTTCTCTTTTAGAATTGGAACATAGATCTGAGAGAGAGCCCATCACGAGCGGCAAATGAAAACTTTATTCACCCTATGCTTTAAGTTACGGGGGGAAAACTGGCTGTTTGGGAGCTATTATGAAAAATAGCCTTCCTCTTTTTAGGCAAATTCTTACAAATTAAATCCATAAGACTATTTTTCAAAATATCTCCCAAGCCCAAAAGCCCTTTAGCACAAGGATATGAGGAAAAGAAGGTACTAAAGAGGCTTCCTGGCTTCCTTGAAGTGCTATGCCTACCTAGAACTGCTTCCTTTAAGCTGATGAACATGGCCATCAATCTTTTGAAAGTCCACGTCAGGTTGAGCTCTGAAAAAAGGCAAGGGAAAGAAAATAAAACCCCATAAAAATTCCGGGAATACTCATTCAAAACAAAGAAACTCATAGATTATAAGCCTCGAGAAGCCTCACAATGCTGCGGTGAGATCATTGAGTAGCCTCTCGGAATCCTCGAAGAAAAGAGACACCACTTCAGCAATGAAATCTGGGTTGCCCTCATCTTGCAGTTTTTGCAGCTCTATAAACTGACTGTCCAAGAAATCCTAGCCCTCCCCAACAAAGACAAAACACCAGAAAACTAAATTCAAGTATCACTTTGAGACTACAAAACAAGAAATGTATAAGAAATGGACTGCTAACTTCCTCTTGGTTGAGTTATACTCATCATAGGAAACTCTTTTGTAACTACAACCTTTCCACGATGGTTAACAACTCGAACGCTTTCTTATAGTTGTTCTTCGGGAGGTGGTTCTCTCTACCCCGACCCTTAGGCCATCATCTTTTCTTTTGATAGATATCATATCGTTTCTCATCTAAAAACGAGACGACAAAACAAGAAATCCTACTCTCCCCAACATAGAAAAAAACACCAAAAAACCAAACAACAAAAGCAAAACCCATCTCTGATTTGATCTTTGTTTTTGTTCATTCATACCTCCAAGAATAGCGACTTAGTGTACTCGACCCATTGTCTCTGCATCAATCCCACCTCCATGCTTGCACTACACGCAAGAAGTAAAAAGAAAAAGAAACTCTGTTATTAAAACTGCAACCCAACAAAGCACCTACCTTAAATTGCACAGATCCTTTACAATAATTGCACCAGACAAAGGGTTGGAGTGCCAGAAAACCTTCAAAATTATTGGTGAGAGATGATTCCTAATGATCGTAGTAGTAGCAGCAATTCAAAGCTTTTCCCTTATTTTTAGGTGTTTTTTGTTGTCCCCAACTTCCACAATTTGCTCTCTCTTGGCCTTTGTGTCATTTATTCACTTATGAACCTCAACTCTGAAAGGAGCCCTTTACCATTTGATCTCCTTTTTAGTGTTCGCTTTACCTGTGCTATACATCGTTTTCGCTGTA

mRNA sequence

TGAAAGCACGGAGCTTCTTTTCTTTTTGCCTGATCTAACCATTTCAAGTGCATTGTGGGAATCTCTGAGCTCTGATAGATCACAGTCTCTGTTTCTCTGTTTCTCTCCACGAGACATAGCCACCGGAAACAATGGCGTCGTCGACGGCTAGGATTACGTTTCGCGTTGTTATGGTGGTGATTCTCCTCCTCGTCGTTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCAACTGTACATGATATTCGCCAGAACAAACAGACCGTCAAAGAAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCTGGCGTCCGTGAAGGAAATGATGGAAAGAATTCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGGTTTTGTGAAAATCTCAGTTATTTGAATTGCGATTAGTTCGGGATAATTGAATGGTTTCATATGCATTAGTAAAGNTTTTTTTTTTTTTTTTTTTTCTCGTAATAACGTAATAATGTAATAACGTGTTAATTAGCACCTACTGAGTCGATTTAGTTAAAGAAGGCTAAGAAAGGCTAAGAAAGGAAAAGAAATCGTAATGCTTCAACGTTCAGCCTTTAATGTTTCCATTATGCACTGTTAGTCACTCGGATATGTGGATAGTGATATTTGTACCTGACACATGGTGAACTACTGCTTACGAAAGACTCGTTCTGACAAGAAATTAGATAGTGTTAGTTTATAATGAGCGAAGTTGGCTGATATTGTGAATGAGAAATTTTAGTTTAAGACTGAATATTAGGTAGAGGTGGAAATGTGTACATAGGATGATAAGAACTAAAGATAGCAGTAGTCTTTTGTGATGGTTTGTGTGCAAATTTGGCATTCTGGTGCTGAAGGAGCAATTTCAAACAAAATCAACTGATTGAAGTATAACAGAGAAGGCTTCAATAAGAAAATTGTAGAAAACGATCGATACCTTTGAACTTGTCTAGATAGAACTACGACTTGGTGGATCTGTAGTTGACCATGAAAACAAAGCCATAATGCCCTACTGTCTTGGTAATCATGTTTCTTTGCTCTTTATTTATTTATTTTTATTCTTATTTTTTTATTCATAAGCTCAAATGCGGAAAATATCATAAATCTCACTTGGCAATAAGTTACAGTCCATGTGCAAAAATAATCTGTCCCTGTTGTCTGACTTGTGGTAACTTCTAATTATGAAATTAGTAGTTACCTTTCCCCAGGTCTTTGAATCAACTTATATACCTATCTCTTCTCGCCCTCGTAACCATGAGACAGGAGATGAGAAAGGAATTTCTGCAGAATGTTTGAGCAAATACATATGGCAATCATGTCTACAAACATGGCAGTCTATGTAGTGTTCTGTAGGAACGTACACACGAAATTAATTGTACTGAGTCTAGACTCTTTTCCCTAATCAAGTTAGAAAGAAACCTCTGACCCGAGACTTTACTCATCTTATGATCTTTCTTAGTTAATCAACCCTGTACCATGATAAAGGGTGACTAATATTTCAGAATTTGGATTTTGAATGAGCGAGCAAGCTATAATATCTTGGTTTCTAGGGGAATTGGAAGCATTTTGACCATTTTTAGTAGTCTGAAGTCTGAATTGGTTGAGCTGAACAGATCTGAATCTTTGCATAGTATTGTTCCCCTCTAAGATGACTCAATCTCACGGATCTCCATGAAAGGACTGCCGCTAGACTATGATGGATTTCTGAATTCTAACTTGATATTAAACATTATAACATAATGTAATGGAAGCTCAATTTTCTCCATCCTACTTCATAAAAATTTCAAACCAGTGGAGATTTTAAACTTTTTGCAGTTCCTGCAATCCGTCTTTCTTAATAATAACACAAAATAATCTTAAATGTGCTAACATACATCATGAACTCTCAACCAGATTGTTTGTCATGTTGTGGAAAACTTGGAACGAAGTTTTGCCTTGTTGAACAATATTGCTTGAGAAAAAATATTAAGAAGAAATATAGAATTTTGCAGCCTTGCTTGATGTTTAATCTGCTACTTCAAACATCACTTCAATAAAATCTTTTCCATGTAACTGAAGATACATTTTGTTTTGTTTTACTCAAGTTTTTAGAACGTTTGTGCTAAATTAGGAGTAGGAGAAGCCAAGTGGAAGGGGGAAGGAGTGGTTTAAAGTGTGCTAGAAATATTTCTTTGAAATGCTCACTATGATGCACAAATGCTAAGTATCCGTTCATAGACTTGGTGTTTATTTTTAATCCAAATTCATTGATAATTCCACCTAAATCATCAAGTATATCTGACACCGAGGTGTCATATGGAAACTCTTTACAAGAATCCATTACAATGTTCAACCATCCAAGAATTTCACCTTCCTCCTTAAGGGGAAGGTTACACTCTTCAAGATTAAAATCCTTTTTTCAGATAAATTATCATAATCTTTCTCCAAAGAGGGGCAGGAAAAGTGCATCCTCTTGCTCTCTCAAGGTATAAATCATTTTTCTTTTACCAGGGCTCATCGACTTGCTTAGGTTAGTCTCTGATCTAGTATTAATGTTCACTATTGGGATTACGTAGTTGAAAATTATGTATGTAACCGCACATTTGGTATGACACCCCTGTAAAACCGGCCGTAGAAAACCTCTCCCAATTGTCTAATCAATGTGGAAAAGGAACACTCGGACACACGTGGTAGAGCTTTTACTTACCTTTAAAATCAACTTGAAAAAGAGAGTCCTCAAATATTTATAAAAAGCCAGTTCTTGTTGTTCACAATGTGGAACTCCATCGGAATCTTTACATACAACCTTCGTTTAACATTGACGTCACACAGGAAAGTGGCATGGTTTAGAAAATACTTCCTCGCTCCTATCCAAAGAAAATACCTCCTCACGCAATAAACTTTCATAGAGATCTCATCAAACAGAAGAACAATAATGTCCCAAGGACCCCAAGAAAATGGAAAAACGACACCCCCATCAACTGTGGCTCTAGGAAGTATTCTCTCACATTCGACTTAGAATATCAATTCTGTTGTAGGGATCGACCCACCAGCAGCCACAATTTGTTGCTCCATCTGCAATTAACAATTTAAGGTATAAATCCTTTGAAATTATGAAGGATCTGCTAGTTTTTTTAACAACAGTCTATGTACTGTTTTGTCTGTCCTTGTACATTTTTTTTAAGTTTCTCTCAATGCTCAGTTTCTTACCCAAAATGATGATAATAATAATAACAGTCTTATGTACTGACCCTGAATAGATTCTCAAGCTTGTTTTTCACGAGGCAGATCTCTTGCTTTAATTGTTGTAGACATCTCAGGCACCTGCACCCACAATTTTCATTGTTTTCATAAGCTGATTTTATTCACTATCGCACATATGTTGCAGGAGCTTATCTAGAAAAACTTTTGATTTTGTTTTACTAACTCTAGGGCCAAAATAATGATTAAAAAGAAAGTTTGATAATGATGAAAGTATTTCATGGTAAAACATTGAGGTTTTAAATGTTAAAAAAACCAAATTAGGAAGTAGGTAAAAGCTCTAGTTCCAAGAATGAACTTCAAAAATTTAGGGACCTAGGTAAAATTCAAGAATCAAAACCCTACTTGAACCTAAGCATCATCATATGAACCCAGCTTAGCCTTTAGTAAATAAGAACTCACCCTTCAATGTTCTGTTCCTCACAGAAGCTGCGCATGGTAATACAGACATTTTTAACTCTCTGTGCACCTATGCTGTCAATCACAAAAGTTACAGAATTCTTCATTCAGTTGATTTTCGGTTCTAAAATTGATCATCTTTTTTAGATTACTATTTAGTTCTCTTTTAGAATTGGAACATAGATCTGAGAGAGAGCCCATCACGAGCGGCAAATGAAAACTTTATTCACCCTATGCTTTAAGTTACGGGGGGAAAACTGGCTGTTTGGGAGCTATTATGAAAAATAGCCTTCCTCTTTTTAGGCAAATTCTTACAAATTAAATCCATAAGACTATTTTTCAAAATATCTCCCAAGCCCAAAAGCCCTTTAGCACAAGGATATGAGGAAAAGAAGGTACTAAAGAGGCTTCCTGGCTTCCTTGAAGTGCTATGCCTACCTAGAACTGCTTCCTTTAAGCTGATGAACATGGCCATCAATCTTTTGAAAGTCCACGTCAGGTTGAGCTCTGAAAAAAGGCAAGGGAAAGAAAATAAAACCCCATAAAAATTCCGGGAATACTCATTCAAAACAAAGAAACTCATAGATTATAAGCCTCGAGAAGCCTCACAATGCTGCGGTGAGATCATTGAGTAGCCTCTCGGAATCCTCGAAGAAAAGAGACACCACTTCAGCAATGAAATCTGGGTTGCCCTCATCTTGCAGTTTTTGCAGCTCTATAAACTGACTGTCCAAGAAATCCTAGCCCTCCCCAACAAAGACAAAACACCAGAAAACTAAATTCAAGTATCACTTTGAGACTACAAAACAAGAAATGTATAAGAAATGGACTGCTAACTTCCTCTTGGTTGAGTTATACTCATCATAGGAAACTCTTTTGTAACTACAACCTTTCCACGATGGTTAACAACTCGAACGCTTTCTTATAGTTGTTCTTCGGGAGGTGGTTCTCTCTACCCCGACCCTTAGGCCATCATCTTTTCTTTTGATAGATATCATATCGTTTCTCATCTAAAAACGAGACGACAAAACAAGAAATCCTACTCTCCCCAACATAGAAAAAAACACCAAAAAACCAAACAACAAAAGCAAAACCCATCTCTGATTTGATCTTTGTTTTTGTTCATTCATACCTCCAAGAATAGCGACTTAGTGTACTCGACCCATTGTCTCTGCATCAATCCCACCTCCATGCTTGCACTACACGCAAGAAGTAAAAAGAAAAAGAAACTCTGTTATTAAAACTGCAACCCAACAAAGCACCTACCTTAAATTGCACAGATCCTTTACAATAATTGCACCAGACAAAGGGTTGGAGTGCCAGAAAACCTTCAAAATTATTGGTGAGAGATGATTCCTAATGATCGTAGTAGTAGCAGCAATTCAAAGCTTTTCCCTTATTTTTAGGTGTTTTTTGTTGTCCCCAACTTCCACAATTTGCTCTCTCTTGGCCTTTGTGTCATTTATTCACTTATGAACCTCAACTCTGAAAGGAGCCCTTTACCATTTGATCTCCTTTTTAGTGTTCGCTTTACCTGTGCTATACATCGTTTTCGCTGTA

Coding sequence (CDS)

ATGGCGTCGTCGACGGCTAGGATTACGTTTCGCGTTGTTATGGTGGTGATTCTCCTCCTCGTCGTTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCAACTGTACATGATATTCGCCAGAACAAACAGACCGTCAAAGAAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCTGGCGTCCGTGAAGGAAATGATGGAAAGAATTCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGGTTTTGTGA

Protein sequence

MASSTARITFRVVMVVILLLVVFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVREGNDGKNSGSGAIRRLLHQVL
Homology
[Close]
BLAST of Cp4.1LG12g02490 vs. TrEMBL
Match: A0A0A0KBE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067370 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 4.8e-41
Identity = 88/95 (92.63%), Postives = 93/95 (97.89%), Query Frame = 1 

Query: 1  MASSTARITFRVVMVVILLLVVFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRV+MVVILLLV+FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVREGNDGKNSGSGAIRRLLHQVL 96
          SVGWYHDESDSGV +GNDGK +GSGAIRRLLHQVL
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQVL 95

[Close]
BLAST of Cp4.1LG12g02490 vs. TrEMBL
Match: W9S2S8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011283 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.4e-31
Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 1 

Query: 1  MASSTARITFRVVMVVILLLVVFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFR+ MVV++LL+ FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIV+EAQ+
Sbjct: 1  MASSTAKITFRIAMVVLVLLLFFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVMEAQR 60

Query: 61 SVGWYHDESDSGVREGNDGKNSGSGAIRRL 91
          +VGWYHDESDSG REG  GKN  S   R+L
Sbjct: 61 TVGWYHDESDSGAREGRFGKNLRSATSRKL 90

[Close]
BLAST of Cp4.1LG12g02490 vs. TrEMBL
Match: A5BUI4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008851 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.2e-29
Identity = 65/95 (68.42%), Postives = 85/95 (89.47%), Query Frame = 1 

Query: 1  MASSTARITFRVVMVVILLLVVFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MA+STAR++FRV++V++L+L++FYVGRPLYWKISATVH+IRQNKQTVK+G+SQ V EAQK
Sbjct: 1  MATSTARVSFRVIVVILLILLLFYVGRPLYWKISATVHEIRQNKQTVKQGISQFVFEAQK 60

Query: 61 SVGWYHDESDSGVREGNDGKNSGSGAIRRLLHQVL 96
          SVGW+HDESDSG+RE    +N+ + A R++L QVL
Sbjct: 61 SVGWFHDESDSGLRE---DRNAAAAANRKILRQVL 92

[Close]
BLAST of Cp4.1LG12g02490 vs. TrEMBL
Match: M5XMT6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013919mg PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.2e-29
Identity = 68/95 (71.58%), Postives = 81/95 (85.26%), Query Frame = 1 

Query: 1  MASSTARITFRVVMVVILLLVVFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASS ARITFR++++ ++LLV+FYVGRPLYWKISAT+H+IR+NKQTV++GLS+IVLEAQK
Sbjct: 1  MASSAARITFRILIIALVLLVLFYVGRPLYWKISATIHEIRENKQTVQQGLSKIVLEAQK 60

Query: 61 SVGWYHDESDSGVREGNDGKNSGSGAIRR-LLHQV 95
          SVGWYHDESDSG R     KN G    RR LLHQV
Sbjct: 61 SVGWYHDESDSGSRVNRVAKNVGLATTRRLLLHQV 95

[Close]
BLAST of Cp4.1LG12g02490 vs. TrEMBL
Match: D7T6L8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02180 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-28
Identity = 64/95 (67.37%), Postives = 84/95 (88.42%), Query Frame = 1 

Query: 1  MASSTARITFRVVMVVILLLVVFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MA+STAR++FRV++ ++L+L++FYVGRPLYWKISATVH+IRQNKQTVK+G+SQ V EAQK
Sbjct: 1  MATSTARVSFRVIVAILLILLLFYVGRPLYWKISATVHEIRQNKQTVKQGISQFVFEAQK 60

Query: 61 SVGWYHDESDSGVREGNDGKNSGSGAIRRLLHQVL 96
          SVGW+HDESDSG+RE    +N+ + A R++L QVL
Sbjct: 61 SVGWFHDESDSGLRE---DRNAAAAANRKILRQVL 92

[Close]
BLAST of Cp4.1LG12g02490 vs. TAIR10
Match: AT5G18850.1 (AT5G18850.1 unknown protein)

HSP 1 Score: 124.0 bits (310), Expect = 4.9e-29
Identity = 62/90 (68.89%), Postives = 76/90 (84.44%), Query Frame = 1 

Query: 2  ASSTARITFRVVMVVILLLVVFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKS 61
          +S T RI FR V+++ L++V+FYVGRPLYWKISAT+HDIR NKQ+V+EG+SQIV EAQ+S
Sbjct: 6  SSPTTRIWFRTVILIALMVVLFYVGRPLYWKISATIHDIRHNKQSVREGISQIVHEAQRS 65

Query: 62 VGWYHDESDSGVREGNDGKNSGSGAIRRLL 92
          VGWYHDESDSG REG++ K SG    RRLL
Sbjct: 66 VGWYHDESDSGFREGHN-KKSGIAVSRRLL 94

[Close]
BLAST of Cp4.1LG12g02490 vs. NCBI nr
Match: gi|700190975|gb|KGN46179.1| (hypothetical protein Csa_6G067370 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 6.9e-41
Identity = 88/95 (92.63%), Postives = 93/95 (97.89%), Query Frame = 1 

Query: 1  MASSTARITFRVVMVVILLLVVFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRV+MVVILLLV+FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVREGNDGKNSGSGAIRRLLHQVL 96
          SVGWYHDESDSGV +GNDGK +GSGAIRRLLHQVL
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQVL 95

[Close]
BLAST of Cp4.1LG12g02490 vs. NCBI nr
Match: gi|778710947|ref|XP_011656653.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 5.8e-40
Identity = 86/94 (91.49%), Postives = 92/94 (97.87%), Query Frame = 1 

Query: 1  MASSTARITFRVVMVVILLLVVFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRV+MVVILLLV+FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVREGNDGKNSGSGAIRRLLHQV 95
          SVGWYHDESDSGV +GNDGK +GSGAIRRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQM 94

[Close]
BLAST of Cp4.1LG12g02490 vs. NCBI nr
Match: gi|778710941|ref|XP_011656651.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 9.9e-40
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 1 

Query: 1  MASSTARITFRVVMVVILLLVVFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRV+MVVILLLV+FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVREGNDGKNSGSGAIRRLLHQ 94
          SVGWYHDESDSGV +GNDGK +GSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]
BLAST of Cp4.1LG12g02490 vs. NCBI nr
Match: gi|778710944|ref|XP_011656652.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X2 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 9.9e-40
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 1 

Query: 1  MASSTARITFRVVMVVILLLVVFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRV+MVVILLLV+FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVREGNDGKNSGSGAIRRLLHQ 94
          SVGWYHDESDSGV +GNDGK +GSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]
BLAST of Cp4.1LG12g02490 vs. NCBI nr
Match: gi|659117275|ref|XP_008458514.1| (PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 2.2e-39
Identity = 86/94 (91.49%), Postives = 92/94 (97.87%), Query Frame = 1 

Query: 1  MASSTARITFRVVMVVILLLVVFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRV+MVVILLLV+FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVREGNDGKNSGSGAIRRLLHQV 95
          SVGWYHDESDSGV++GNDGK +GS AIRRLLHQV
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQV 94

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g02490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g02490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBE9_CUCSA4.8e-4192.63Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067370 PE=4 SV=1[more]
W9S2S8_9ROSA3.4e-3178.89Uncharacterized protein OS=Morus notabilis GN=L484_011283 PE=4 SV=1[more]
A5BUI4_VITVI4.2e-2968.42Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008851 PE=4 SV=1[more]
M5XMT6_PRUPE7.2e-2971.58Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013919mg PE=4 SV=1[more]
D7T6L8_VITVI1.2e-2867.37Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02180 PE=4 SV=... [more]
BLAST of Cp4.1LG12g02490 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G18850.14.9e-2968.89 unknown protein[more]
BLAST of Cp4.1LG12g02490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190975|gb|KGN46179.1|6.9e-4192.63hypothetical protein Csa_6G067370 [Cucumis sativus][more]
gi|778710947|ref|XP_011656653.1|5.8e-4091.49PREDICTED: uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus][more]
gi|778710941|ref|XP_011656651.1|9.9e-4092.47PREDICTED: uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus][more]
gi|778710944|ref|XP_011656652.1|9.9e-4092.47PREDICTED: uncharacterized protein LOC101217077 isoform X2 [Cucumis sativus][more]
gi|659117275|ref|XP_008458514.1|2.2e-3991.49PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g02490.1Cp4.1LG12g02490.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g02490Cucsa.363380Cucumber (Gy14) v1cgycpeB0948
Cp4.1LG12g02490CmaCh17G002940Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g02490CmoCh08G011660Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g02490CmoCh17G002810Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g02490Cla009351Watermelon (97103) v1cpewmB161
Cp4.1LG12g02490Csa6G067370Cucumber (Chinese Long) v2cpecuB144
Cp4.1LG12g02490MELO3C021378Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g02490ClCG06G005560Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g02490CSPI06G05270Wild cucumber (PI 183967)cpecpiB146
Cp4.1LG12g02490Lsi09G013820Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g02490MELO3C021378.2Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g02490CsaV3_6G005600Cucumber (Chinese Long) v3cpecucB0168
Cp4.1LG12g02490Bhi12G001570Wax gourdcpewgoB0180
Cp4.1LG12g02490Carg15949Silver-seed gourdcarcpeB0450
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g02490Cp4.1LG17g01020Cucurbita pepo (Zucchini)cpecpeB169
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g02490Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g02490Silver-seed gourdcarcpeB0099
Cp4.1LG12g02490Silver-seed gourdcarcpeB0857
Cp4.1LG12g02490Silver-seed gourdcarcpeB1163
Cp4.1LG12g02490Cucumber (Chinese Long) v3cpecucB0154
Cp4.1LG12g02490Wax gourdcpewgoB0188
Cp4.1LG12g02490Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g02490Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g02490Cucumber (Gy14) v1cgycpeB0671
Cp4.1LG12g02490Cucurbita maxima (Rimu)cmacpeB262
Cp4.1LG12g02490Cucurbita maxima (Rimu)cmacpeB810
Cp4.1LG12g02490Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g02490Cucurbita moschata (Rifu)cmocpeB225
Cp4.1LG12g02490Wild cucumber (PI 183967)cpecpiB133
Cp4.1LG12g02490Wild cucumber (PI 183967)cpecpiB155
Cp4.1LG12g02490Cucumber (Chinese Long) v2cpecuB132
Cp4.1LG12g02490Cucumber (Chinese Long) v2cpecuB153
Cp4.1LG12g02490Bottle gourd (USVL1VR-Ls)cpelsiB118
Cp4.1LG12g02490Watermelon (Charleston Gray)cpewcgB139
Cp4.1LG12g02490Watermelon (97103) v1cpewmB152
Cp4.1LG12g02490Melon (DHL92) v3.5.1cpemeB140
Cp4.1LG12g02490Cucumber (Gy14) v2cgybcpeB303
Cp4.1LG12g02490Cucumber (Gy14) v2cgybcpeB724