Csa6G067370.2 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G067370.2
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 4757249 .. 4758729 (-)
Sequence length	321

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCGAAACAACACTGCCCATAAGAGACAAAAATGTGAAATAGAAACAGCGATAAATACCAATGAGAAAACTCCGAGCTTCTCTTCTTCTTGCCTGATCTAACCATTTCAACTCCATCGCGGGAATCTCTGAGCTCTCTCTCTCTCTCTCTCTATCTATCTCTTTCTTCTAGACATAGCCACCGGAAACAATGGCGTCGTCGACGGCTAAGATTACGTTTCGTGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCTACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGTGCGTTAATTGAATGCTAAATCTGTATGTTTATGCTTGTCTCAGTTCTGACTTAGAGTTTGAATTCTTCGTTCTGGACCTGCATTTCAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCATGATGAGTCGGACTCGGGCGTTCATGATGGAAATGATGGAAAGAAAGCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGGTTTTGTGAAAATCTTAGTTATTTGAATTGTGATTAGTCCTGGAGAATTGAATTGTTTCACATGCATTAGTAAAGTTCAATTAGCGGATCTGGATTTTTTTTTTTTTTTTTTTTTTTTTGCCCTTAATAACGTGTGTTATAATGACTGAATTAGCACCTACTGAATCTATTTAGTTAAAGGAAGGCAAAAAAAAAAAAAAAAAAAAGATGAAGAAATCGTAATGCTTCGGCGTTCAGTCTTCACCGTTTCCATTATGCATCGTTAGTCACTCGGATGTGTGGATAGTGATATTTGTACTTAGATGTGGTGACCTACTGCTTGCGAAAACTCATTTTGACACACACACACACAAAAGAAAAAAAAAGAAGAAGATATTGTTAGTTTGTATCGAGCGGAATTGGCTGATAATGTGAATTGGAATTTTGTAGTTTAAGACTGAATGTTTGGTAAAGGTGGAAATGCGTACATAGGATGATGAACTAAAGATGACAATGGCCTTTTGTAATGGTTTTTGTTACTGTGAGTCCGTGACGGGCTAATTGGGCATTCTGGTGCTGAAGGAGCGATTTGAAACAAAATCAACTAATTGAAGTATAATGGAGAAGGCTTCAATAAAAAGATTGTACAAAATAATGATGGATGCCTCTGAACCTTTCTAGATAGATCCAAGACTTGGTGGAGCTGTAGTTAACCATAAAAACCCATAATGCCCTGCTGTTTAATCATGTTTCCTTGTGCTTTTTATTCATAAGCTCAAATGCAGCAACCATGACAAATCTTACTTGGCAGTGTGCCCTTCACTTGTGGCAACTCCCAAGTCCTAATGGTGAAATTAGTAGTTGCCTTTGTATACCTATCTCATCTCGTCCTCATAAACATGAGAAGGGAGATGAGAAAGGAATTCCTGCAGAATGTTTACACA

mRNA sequence

ATGGCGTCGTCGACGGCTAAGATTACGTTTCGTGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCTACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCATGATGAGTCGGACTCGGGCGTTCATGATGGAAATGATGGAAAGAAAGCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGTTTAAGACTGAATGTTTGGTAAAGGTGGAAATGCGTACATAG

Coding sequence (CDS)

ATGGCGTCGTCGACGGCTAAGATTACGTTTCGTGTTATCATGGTGGTGATCCTCCTCCTCGTCTTGTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCTACTGTACATGATATTCGTCAGAACAAACAGACCGTCAAAGAAGGCCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCATGATGAGTCGGACTCGGGCGTTCATGATGGAAATGATGGAAAGAAAGCCGGATCGGGTGCTATTCGGAGGCTGCTTCATCAGTTTAAGACTGAATGTTTGGTAAAGGTGGAAATGCGTACATAG

Protein sequence

MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFKTECLVKVEMRT*

Homology

[Close]

BLAST of Csa6G067370.2 vs. TrEMBL
Match: A0A0A0KBE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067370 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.0e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]

BLAST of Csa6G067370.2 vs. TrEMBL
Match: W9S2S8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011283 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 7.8e-32
Identity = 69/90 (76.67%), Postives = 78/90 (86.67%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFR+ MVV++LL+ FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIV+EAQ+
Sbjct: 1  MASSTAKITFRIAMVVLVLLLFFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVMEAQR 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRL 91
          +VGWYHDESDSG  +G  GK   S   R+L
Sbjct: 61 TVGWYHDESDSGAREGRFGKNLRSATSRKL 90

[Close]

BLAST of Csa6G067370.2 vs. TrEMBL
Match: M5XMT6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013919mg PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.2e-29
Identity = 65/94 (69.15%), Postives = 78/94 (82.98%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASS A+ITFR++++ ++LLVLFYVGRPLYWKISAT+H+IR+NKQTV++GLS+IVLEAQK
Sbjct: 1  MASSAARITFRILIIALVLLVLFYVGRPLYWKISATIHEIRENKQTVQQGLSKIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRR-LLHQ 94
          SVGWYHDESDSG       K  G    RR LLHQ
Sbjct: 61 SVGWYHDESDSGSRVNRVAKNVGLATTRRLLLHQ 94

[Close]

BLAST of Csa6G067370.2 vs. TrEMBL
Match: A5BUI4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008851 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-28
Identity = 62/93 (66.67%), Postives = 81/93 (87.10%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MA+STA+++FRVI+V++L+L+LFYVGRPLYWKISATVH+IRQNKQTVK+G+SQ V EAQK
Sbjct: 1  MATSTARVSFRVIVVILLILLLFYVGRPLYWKISATVHEIRQNKQTVKQGISQFVFEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGW+HDESDSG+    + + A + A R++L Q
Sbjct: 61 SVGWFHDESDSGL---REDRNAAAAANRKILRQ 90

[Close]

BLAST of Csa6G067370.2 vs. TrEMBL
Match: A0A0D2RYN0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G074800 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.0e-28
Identity = 61/82 (74.39%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASST+K+ FR+++ V+LLL LFYVGRPLYWKISATVHDIR NKQTV+EG+SQI+LEAQ+
Sbjct: 1  MASSTSKLAFRIVLAVLLLLALFYVGRPLYWKISATVHDIRHNKQTVQEGISQIMLEAQR 60

Query: 61 SVGWYHDESDSGVHDGNDGKKA 83
          SVGW++DESDSG+H+ N GK+A
Sbjct: 61 SVGWFNDESDSGIHE-NRGKQA 81

[Close]

BLAST of Csa6G067370.2 vs. TAIR10
Match: AT5G18850.1 (AT5G18850.1 unknown protein)

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-29
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 1


Query: 2  ASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKS 61
          +S T +I FR ++++ L++VLFYVGRPLYWKISAT+HDIR NKQ+V+EG+SQIV EAQ+S
Sbjct: 6  SSPTTRIWFRTVILIALMVVLFYVGRPLYWKISATIHDIRHNKQSVREGISQIVHEAQRS 65

Query: 62 VGWYHDESDSGVHDGNDGKKAGSGAIRRLL 92
          VGWYHDESDSG  +G++ KK+G    RRLL
Sbjct: 66 VGWYHDESDSGFREGHN-KKSGIAVSRRLL 94

[Close]

BLAST of Csa6G067370.2 vs. NCBI nr
Match: gi|778710944|ref|XP_011656652.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X2 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 2.6e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1


Query: 1   MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
           MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1   MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61  SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFKTECLVKVEMRT 107
           SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFKTECLVKVEMRT
Sbjct: 61  SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFKTECLVKVEMRT 106

[Close]

BLAST of Csa6G067370.2 vs. NCBI nr
Match: gi|659117277|ref|XP_008458515.1| (PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo])

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-49
Identity = 103/106 (97.17%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
           MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1   MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61  SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQFKTECLVKVEMRT 107
           SVGWYHDESDSGV DGNDGKKAGS AIRRLLHQFKTECL KVEMRT
Sbjct: 61  SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQFKTECLGKVEMRT 106

[Close]

BLAST of Csa6G067370.2 vs. NCBI nr
Match: gi|700190975|gb|KGN46179.1| (hypothetical protein Csa_6G067370 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]

BLAST of Csa6G067370.2 vs. NCBI nr
Match: gi|778710941|ref|XP_011656651.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

[Close]

BLAST of Csa6G067370.2 vs. NCBI nr
Match: gi|778710947|ref|XP_011656653.1| (PREDICTED: uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 94
          SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ
Sbjct: 61 SVGWYHDESDSGVHDGNDGKKAGSGAIRRLLHQ 93

The following BLAST results are available for this feature:

BLAST of Csa6G067370.2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBE9_CUCSA	1.0e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067370 PE=4 SV=1	[more]
W9S2S8_9ROSA	7.8e-32	76.67	Uncharacterized protein OS=Morus notabilis GN=L484_011283 PE=4 SV=1	[more]
M5XMT6_PRUPE	6.2e-29	69.15	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013919mg PE=4 SV=1	[more]
A5BUI4_VITVI	2.3e-28	66.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008851 PE=4 SV=1	[more]
A0A0D2RYN0_GOSRA	4.0e-28	74.39	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G074800 PE=4 SV=1	[more]

BLAST of Csa6G067370.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18850.1	1.1e-29	65.56	unknown protein	[more]

BLAST of Csa6G067370.2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778710944\|ref\|XP_011656652.1\|	2.6e-52	100.00	PREDICTED: uncharacterized protein LOC101217077 isoform X2 [Cucumis sativus]	[more]
gi\|659117277\|ref\|XP_008458515.1\|	1.6e-49	97.17	PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo]	[more]
gi\|700190975\|gb\|KGN46179.1\|	1.5e-44	100.00	hypothetical protein Csa_6G067370 [Cucumis sativus]	[more]
gi\|778710941\|ref\|XP_011656651.1\|	1.5e-44	100.00	PREDICTED: uncharacterized protein LOC101217077 isoform X1 [Cucumis sativus]	[more]
gi\|778710947\|ref\|XP_011656653.1\|	1.5e-44	100.00	PREDICTED: uncharacterized protein LOC101217077 isoform X3 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G067370	Csa6G067370	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa6G067370.2	Csa6G067370.2-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G067370.2.utr3p1	Csa6G067370.2.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G067370.2.cds3	Csa6G067370.2.cds3	CDS
Csa6G067370.2.cds2	Csa6G067370.2.cds2	CDS
Csa6G067370.2.cds1	Csa6G067370.2.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa6G067370.2.utr5p1	Csa6G067370.2.utr5p1	five_prime_UTR