Csa4G182290 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G182290
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 9081363 .. 9081893 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCACCATCCCAAATCACAAAAACTACAAGCTTCATAAAATCAAAACAATGGTGTCTCCCAAGTACTTCATGACCCTAACTTTCATGGCTACTTTGGTGTTTTCAGCCATCGACAGCAGCCGAGCAGCTCGTCGTCTCCTACAAACTGCTCCACCAAACATGCCAGGGTTGCCCTCATTGCCCAAACTGATGGGAATGCCACCTCTACCTCCTTTGCCGATGGGACCAGGAATGCCTTCTATTCCAAATCTCCCACAACCAACATTCCCTACCATTCAACCATCTCTCCCTAAGTTACCTCCACTTCCAAGTCTCCCCGTTAACATCCCGGCCACGGGAGTGGTGTTTCCTCCGCTACCAACTCTACCTTCCATCCCGACGACCTTCCCGTCGATCCCTTTTCTCACTCCGCCCCCAGCCACCACTTCTTCACCTTGAAGGAATCCGCTAGTTCCTTTGTTCTTGTTCACTTATTCATTGATCAGAGTGTTTGATTTTGTTTGATATCATCGTGATCCTATCATCCTATC

mRNA sequence

ATGGTGTCTCCCAAGTACTTCATGACCCTAACTTTCATGGCTACTTTGGTGTTTTCAGCCATCGACAGCAGCCGAGCAGCTCGTCGTCTCCTACAAACTGCTCCACCAAACATGCCAGGGTTGCCCTCATTGCCCAAACTGATGGGAATGCCACCTCTACCTCCTTTGCCGATGGGACCAGGAATGCCTTCTATTCCAAATCTCCCACAACCAACATTCCCTACCATTCAACCATCTCTCCCTAAGTTACCTCCACTTCCAAGTCTCCCCGTTAACATCCCGGCCACGGGAGTGGTGTTTCCTCCGCTACCAACTCTACCTTCCATCCCGACGACCTTCCCGTCGATCCCTTTTCTCACTCCGCCCCCAGCCACCACTTCTTCACCTTGA

Coding sequence (CDS)

ATGGTGTCTCCCAAGTACTTCATGACCCTAACTTTCATGGCTACTTTGGTGTTTTCAGCCATCGACAGCAGCCGAGCAGCTCGTCGTCTCCTACAAACTGCTCCACCAAACATGCCAGGGTTGCCCTCATTGCCCAAACTGATGGGAATGCCACCTCTACCTCCTTTGCCGATGGGACCAGGAATGCCTTCTATTCCAAATCTCCCACAACCAACATTCCCTACCATTCAACCATCTCTCCCTAAGTTACCTCCACTTCCAAGTCTCCCCGTTAACATCCCGGCCACGGGAGTGGTGTTTCCTCCGCTACCAACTCTACCTTCCATCCCGACGACCTTCCCGTCGATCCCTTTTCTCACTCCGCCCCCAGCCACCACTTCTTCACCTTGA

Protein sequence

MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGPGMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLTPPPATTSSP*

Homology

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BLAST of Csa4G182290 vs. Swiss-Prot
Match: RBM12_HUMAN (RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-09
Identity = 41/106 (38.68%), Postives = 49/106 (46.23%), Query Frame = 1


Query: 33  TAPPNMPG----------LPSLPKLMGMPPLPPLPMGPGMPSIPNLPQPTFPTIQPSLPK 92
           TAPPNM            +PS    M   P PP+P  P MPS+P  P P+ P I    P 
Sbjct: 157 TAPPNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLP--PMPSIPPI----PV 216

Query: 93  LPPLPSLPVNIPATGVVFPPLPTLPSIPTTFP-----SIPFLTPPP 124
            PP+P+LP   P      PP+P +PS+P   P      +P L PPP
Sbjct: 217 PPPVPTLPPVPPV-----PPIPPVPSVPPMTPLPPMSGMPPLNPPP 251

HSP 2 Score: 41.2 bits (95), Expect = 1.0e-02
Identity = 21/62 (33.87%), Postives = 30/62 (48.39%), Query Frame = 1


Query: 36  PNMPGLPSLPKLMGMPPLPPLPMGPGMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPA 95
           P  P +P+LP +  +PP+PP+P  P M  +P  P    P + P     PP+  LP  +  
Sbjct: 209 PVPPPVPTLPPVPPVPPIPPVPSVPPMTPLP--PMSGMPPLNP-----PPVAPLPAGMNG 263

Query: 96  TG 98
           +G
Sbjct: 269 SG 263

[Close]

BLAST of Csa4G182290 vs. Swiss-Prot
Match: RBM12_MACMU (RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-09
Identity = 41/106 (38.68%), Postives = 49/106 (46.23%), Query Frame = 1


Query: 33  TAPPNMPG----------LPSLPKLMGMPPLPPLPMGPGMPSIPNLPQPTFPTIQPSLPK 92
           TAPPNM            +PS    M   P PP+P  P MPS+P  P P+ P I    P 
Sbjct: 157 TAPPNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLP--PMPSIPPI----PV 216

Query: 93  LPPLPSLPVNIPATGVVFPPLPTLPSIPTTFP-----SIPFLTPPP 124
            PP+P+LP   P      PP+P +PS+P   P      +P L PPP
Sbjct: 217 PPPVPTLPPVPPV-----PPIPPVPSVPPMTPLPPMSGMPPLNPPP 251

HSP 2 Score: 41.2 bits (95), Expect = 1.0e-02
Identity = 21/62 (33.87%), Postives = 30/62 (48.39%), Query Frame = 1


Query: 36  PNMPGLPSLPKLMGMPPLPPLPMGPGMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPA 95
           P  P +P+LP +  +PP+PP+P  P M  +P  P    P + P     PP+  LP  +  
Sbjct: 209 PVPPPVPTLPPVPPVPPIPPVPSVPPMTPLP--PMSGMPPLNP-----PPVAPLPAGMNG 263

Query: 96  TG 98
           +G
Sbjct: 269 SG 263

[Close]

BLAST of Csa4G182290 vs. Swiss-Prot
Match: RBM12_PONAB (RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-09
Identity = 41/106 (38.68%), Postives = 49/106 (46.23%), Query Frame = 1


Query: 33  TAPPNMPG----------LPSLPKLMGMPPLPPLPMGPGMPSIPNLPQPTFPTIQPSLPK 92
           TAPPNM            +PS    M   P PP+P  P MPS+P  P P+ P I    P 
Sbjct: 157 TAPPNMGASFGSPAFSSTVPSTASPMNTVPPPPIPPIPAMPSLP--PMPSIPPI----PV 216

Query: 93  LPPLPSLPVNIPATGVVFPPLPTLPSIPTTFP-----SIPFLTPPP 124
            PP+P+LP   P      PP+P +PS+P   P      +P L PPP
Sbjct: 217 PPPVPTLPPVPPV-----PPIPPVPSVPPMTPLPPMSGMPPLNPPP 251

HSP 2 Score: 41.2 bits (95), Expect = 1.0e-02
Identity = 21/62 (33.87%), Postives = 30/62 (48.39%), Query Frame = 1


Query: 36  PNMPGLPSLPKLMGMPPLPPLPMGPGMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPA 95
           P  P +P+LP +  +PP+PP+P  P M  +P  P    P + P     PP+  LP  +  
Sbjct: 209 PVPPPVPTLPPVPPVPPIPPVPSVPPMTPLP--PMSGMPPLNP-----PPVAPLPAGMNG 263

Query: 96  TG 98
           +G
Sbjct: 269 SG 263

[Close]

BLAST of Csa4G182290 vs. Swiss-Prot
Match: RBM12_MOUSE (RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3)

HSP 1 Score: 61.6 bits (148), Expect = 7.2e-09
Identity = 41/107 (38.32%), Postives = 51/107 (47.66%), Query Frame = 1


Query: 33  TAPPNM----------PGLPSLPKLMGMPPLPPLPMGPGMPSIPNLPQ-PTFPTIQPSLP 92
           TAPP+M            +PS    M   P PP+P  P MPS+P LP  P  P + P +P
Sbjct: 157 TAPPSMGTSFGSPTFSSTIPSTASPMNTVPPPPIPPIPAMPSLPPLPSIPPIP-VPPPVP 216

Query: 93  KLPPLPSLPVNIPATGVVFPPLPTLPSIP--TTFP---SIPFLTPPP 124
            LPP+P +           PP+P +PS+P  TT P    +P L PPP
Sbjct: 217 TLPPVPPV-----------PPIPPVPSVPPMTTLPPMSGMPPLNPPP 251

HSP 2 Score: 42.0 bits (97), Expect = 5.9e-03
Identity = 21/62 (33.87%), Postives = 31/62 (50.00%), Query Frame = 1


Query: 36  PNMPGLPSLPKLMGMPPLPPLPMGPGMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPA 95
           P  P +P+LP +  +PP+PP+P  P M ++P  P    P + P     PP+  LP  +  
Sbjct: 209 PVPPPVPTLPPVPPVPPIPPVPSVPPMTTLP--PMSGMPPLNP-----PPVAPLPAGMNG 263

Query: 96  TG 98
           +G
Sbjct: 269 SG 263

[Close]

BLAST of Csa4G182290 vs. Swiss-Prot
Match: FMN2_HUMAN (Formin-2 OS=Homo sapiens GN=FMN2 PE=1 SV=4)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-07
Identity = 42/104 (40.38%), Postives = 52/104 (50.00%), Query Frame = 1


Query: 35   PPNMPG--LPSLPKL--MGMPPLPPLPMGPGMPSIPNLPQPTFPTIQPSLPKL--PPLPS 94
            PP +PG  +P  P L  +G+PP PPLP G G+P  P LP    P   P LP +  PP P+
Sbjct: 1165 PPPLPGAGIPPPPPLPGVGIPPPPPLP-GVGIPPPPPLPGAGIPP-PPPLPGMGIPPAPA 1224

Query: 95   LPVNIPATGVVFPPL------PTLPSIPTTFPSIP----FLTPP 123
             P+  P TG+  PPL      P LP + ++    P    FL PP
Sbjct: 1225 PPLPPPGTGIPPPPLLPVSGPPLLPQVGSSTLPTPQVCGFLPPP 1266

HSP 2 Score: 29.3 bits (64), Expect = 4.0e+01
Identity = 15/36 (41.67%), Postives = 19/36 (52.78%), Query Frame = 1


Query: 31  LQTAPPNMPGLPSLPKLMGMPPLPPLPMGPGMPSIP 67
           +QT+P    G+ +LP + G+P  PP P  PG  S P
Sbjct: 744 IQTSPTEEGGVLTLPPVDGLPGRPPCP--PGAESGP 777

[Close]

BLAST of Csa4G182290 vs. TrEMBL
Match: A0A0A0KWI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.3e-69
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60
           MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP
Sbjct: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60

Query: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120
           GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT
Sbjct: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120

Query: 121 PPPATTSSP 130
           PPPATTSSP
Sbjct: 121 PPPATTSSP 129

[Close]

BLAST of Csa4G182290 vs. TrEMBL
Match: A0A0A0KZV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-28
Identity = 72/127 (56.69%), Postives = 88/127 (69.29%), Query Frame = 1


Query: 10  LTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGPGMPSIPNLP 69
           LTFM T VFS++D++R +R LLQT   N+P +PSLPK   +PPLPP+P GP +PSIPN P
Sbjct: 9   LTFMVTCVFSSVDAARTSRHLLQTIL-NLPPMPSLPKPSALPPLPPMPTGPSIPSIPNFP 68

Query: 70  QPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPT--------LPSIPTTFP-SIPFLT 128
           QP+ P +      LPPLPSLP+NIP T V  PPLPT        L SI TT P S+PF +
Sbjct: 69  QPSLPKL-----TLPPLPSLPMNIP-TKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFFS 128

[Close]

BLAST of Csa4G182290 vs. TrEMBL
Match: U5G7A3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03440g PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.8e-23
Identity = 72/134 (53.73%), Postives = 83/134 (61.94%), Query Frame = 1


Query: 5   KYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGPGMPS 64
           KYF  L     L FS+++ S AAR LLQ                 +PPLP +PM P +PS
Sbjct: 5   KYFFILALFIALTFSSMNVSIAARHLLQ-----------------LPPLPKIPMPP-LPS 64

Query: 65  IPNLPQPTFPTI---QPSLPK--LPPLPSLPVNIPA----TGVVFPPLPTLPSIPT--TF 124
           IPNLPQPT PT+   QPSLPK  LPPLPS+P  IP       V  PPLP++PSIPT  T 
Sbjct: 65  IPNLPQPTLPTLPTTQPSLPKPTLPPLPSIPT-IPTFPTVPKVTLPPLPSMPSIPTIPTI 119

Query: 125 PSIPFLTPPPATTS 128
           PSIPFL+PPPATTS
Sbjct: 125 PSIPFLSPPPATTS 119

[Close]

BLAST of Csa4G182290 vs. TrEMBL
Match: B9S9H3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0885310 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.7e-23
Identity = 70/129 (54.26%), Postives = 81/129 (62.79%), Query Frame = 1


Query: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60
           M S K F+   F+  L FSAID   AAR LLQ  P  +P +P+LPK    P LPPLP   
Sbjct: 1   MASFKNFL-FVFVIALAFSAIDVGLAARNLLQMPP--LPSVPNLPK----PALPPLP--- 60

Query: 61  GMPSIPNLPQPTFPTI---QPSLPK--LPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPS 120
              +IP LPQPT PT+   Q SLPK  LPPLPSLP          PPLP++PSIPTT PS
Sbjct: 61  ---TIPTLPQPTLPTMPTTQSSLPKPTLPPLPSLPTMPTLPKATLPPLPSMPSIPTTIPS 116

Query: 121 IPFLTPPPA 125
           IPFL+PPP+
Sbjct: 121 IPFLSPPPS 116

[Close]

BLAST of Csa4G182290 vs. TrEMBL
Match: V7BTK6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G203000g PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.1e-23
Identity = 70/147 (47.62%), Postives = 91/147 (61.90%), Query Frame = 1


Query: 1   MVSPKYFMTLTFMATLVFSAIDS-SRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMG 60
           M S K F+TL F+  L FSA+ S + AAR L+QT  PN PG+PSLP       +P LP G
Sbjct: 1   MASSKSFITL-FLLALTFSAMMSMTLAARHLMQTTAPNFPGIPSLPS------IPTLPQG 60

Query: 61  --PGMPSIPNLPQPTFPTIQPSLPKLP-----------PLPSLPVNIPATGVV----FPP 120
             P +P+IP+LPQPT P++  +LP LP            LP LP NIP    +     PP
Sbjct: 61  NVPPLPTIPSLPQPTLPSMPTTLPPLPSNIPTLPSMPTTLPPLPSNIPNIPTIPQLNVPP 120

Query: 121 LPTLP--SIPTTFPSIPFLTPPPATTS 128
           LP++P  +IPTT PSIPFL+PPP+T++
Sbjct: 121 LPSIPTFTIPTTMPSIPFLSPPPSTST 140

[Close]

BLAST of Csa4G182290 vs. TAIR10
Match: AT5G15780.1 (AT5G15780.1 Pollen Ole e 1 allergen and extensin family protein)

HSP 1 Score: 73.9 bits (180), Expect = 7.9e-14
Identity = 47/110 (42.73%), Postives = 56/110 (50.91%), Query Frame = 1


Query: 33  TAPPNMPGLPSLPKLMGMPPLPPLPMGPGMPSIPNLPQPTFPTIQ--PSLPKLPPL---- 92
           T PPN P +PS P L   PP+P +P  P +P+IP LP P  PT+   P++P LPPL    
Sbjct: 285 TLPPN-PLIPSPPSL---PPIPLIPTPPTLPTIPLLPTPPTPTLPPIPTIPTLPPLPVLP 344

Query: 93  -------PSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLTPPPATTSSP 130
                  PSLP   P+  V  PP+P LP IP   P IP + P P     P
Sbjct: 345 PVPIVNPPSLPPPPPSFPVPLPPVPGLPGIPPV-PLIPGIPPAPLIPGIP 389

HSP 2 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 43/103 (41.75%), Postives = 51/103 (49.51%), Query Frame = 1


Query: 35  PPNMPGLPSLPKLMGMPPLPPLPMGPGMPSIPNLP----QPTFPTI----QPSLPKLPPL 94
           PPN P +PS+P     P LPP P+ P  PS+P +P     PT PTI     P  P LPP+
Sbjct: 273 PPN-PLIPSIPT----PTLPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTPTLPPI 332

Query: 95  PSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLTPPPATTSSP 130
           P++P          PPLP LP +P   P  P L PPP +   P
Sbjct: 333 PTIP--------TLPPLPVLPPVPIVNP--PSLPPPPPSFPVP 360

[Close]

BLAST of Csa4G182290 vs. TAIR10
Match: AT4G38080.1 (AT4G38080.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-12
Identity = 53/129 (41.09%), Postives = 66/129 (51.16%), Query Frame = 1


Query: 7   FMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGPGMPSIP 66
           F+T   +A    S   S  A R LLQ+ P   P  P+L      PPLP   M P +PS+P
Sbjct: 8   FVTSLVIALTFTSFFTSLSAHRHLLQSTPVTQP--PALT----FPPLPKTTMPP-VPSLP 67

Query: 67  NLPQPTFPTIQPSLPK---LPPLPSLPVNIPA-TGVVFPPLPTLPSI--PTTFP-----S 125
              Q T P  QP+LP+   LPP+PS    IP+    V P +P +P I  P+ FP     +
Sbjct: 68  TPGQQTLPQPQPTLPQPTGLPPMPS--TQIPSLPNQVQPTIPNIPQINFPSNFPFNFPFN 127

[Close]

BLAST of Csa4G182290 vs. TAIR10
Match: AT2G22510.1 (AT2G22510.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-10
Identity = 46/112 (41.07%), Postives = 57/112 (50.89%), Query Frame = 1


Query: 26  AARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGPGMPSIPNLPQPT-FPTIQPS-LPKL 85
           A+R LLQ+ P   P     P     PPLP   M P  PS  +LPQPT FP +  S +P L
Sbjct: 23  ASRHLLQSTPAITP-----PVTTTFPPLPTTTMPPFPPST-SLPQPTAFPPLPSSQIPSL 82

Query: 86  PPLPSLPVNIPATGVVFPPL--PTLP---------SIPTTFPSIPFLTPPPA 125
           P  P+ P+NIP     FP +  P  P         ++PT+ P+IPF TPPP+
Sbjct: 83  PN-PAQPINIPN----FPQINIPNFPISIPNNFPFNLPTSIPTIPFFTPPPS 123

[Close]

BLAST of Csa4G182290 vs. TAIR10
Match: AT2G34870.1 (AT2G34870.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-10
Identity = 40/110 (36.36%), Postives = 55/110 (50.00%), Query Frame = 1


Query: 16  LVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGPGMPSIPNLPQPTFPT 75
           L+F  +  +  ARRL    P +     +  +   +P  P LP G G+P +P+L  P  P+
Sbjct: 15  LIFHLMPETTVARRLTDQKPSDEVVTTTTDEANNLPFPPGLPFG-GVPPLPSLFPPFVPS 74

Query: 76  IQP-SLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPT-TFPSIPFLTPPP 124
             P ++P+LP     P   P +    PP P+LP  P  TFP +PFLTPPP
Sbjct: 75  PFPGNIPRLP----FPFPFPTS----PPAPSLPGFPGFTFPPLPFLTPPP 115

[Close]

BLAST of Csa4G182290 vs. TAIR10
Match: AT3G02670.1 (AT3G02670.1 Glycine-rich protein family)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 38/97 (39.18%), Postives = 47/97 (48.45%), Query Frame = 1


Query: 36  PNMPGLPSLPKLMGMPPLP------PLPMGPGMPSIPNLP-QPTFPTIQPSLPKLP-PLP 95
           P +PG+P +P L G+P  P      P P  PG  SIP +P  P F        +LP P P
Sbjct: 111 PGIPGIPGIPGLPGIPGSPGFRLPFPFPSSPGGGSIPGIPGSPGF--------RLPFPFP 170

Query: 96  SLPVNIPATGVVFPPLP--TLPSIPTTFPSIPFLTPP 123
                IP   + FPPLP  T+P +P  FP +P +T P
Sbjct: 171 PSGGGIPGLPLPFPPLPPVTIPGLPLPFPPLPPVTIP 199

[Close]

BLAST of Csa4G182290 vs. NCBI nr
Match: gi|778697598|ref|XP_011654355.1| (PREDICTED: RNA-binding protein 12 [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 4.8e-69
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60
           MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP
Sbjct: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60

Query: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120
           GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT
Sbjct: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120

Query: 121 PPPATTSSP 130
           PPPATTSSP
Sbjct: 121 PPPATTSSP 129

[Close]

BLAST of Csa4G182290 vs. NCBI nr
Match: gi|659108950|ref|XP_008454469.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X2 [Cucumis melo])

HSP 1 Score: 199.5 bits (506), Expect = 3.6e-48
Identity = 96/114 (84.21%), Postives = 101/114 (88.60%), Query Frame = 1


Query: 20  AIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGPGMPSIPNLPQPTFPTIQPS 79
           +ID+SRAAR LLQTAPPNMPGLPSLPK +G+PPLPPLPMGPG  SIPN PQPTFPTIQPS
Sbjct: 31  SIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGPGTSSIPNFPQPTFPTIQPS 90

Query: 80  LPKLPPLPSLPVNIPATGVVFPP----LPTLPSIPTTFPSIPFLTPPPATTSSP 130
           LPKLPPLPSLP+NIP TG V PP    LPTLPSIPTTFPSIPFLTPPPAT SSP
Sbjct: 91  LPKLPPLPSLPLNIPTTGAVLPPLTNSLPTLPSIPTTFPSIPFLTPPPATHSSP 144

[Close]

BLAST of Csa4G182290 vs. NCBI nr
Match: gi|659108948|ref|XP_008454468.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X1 [Cucumis melo])

HSP 1 Score: 199.5 bits (506), Expect = 3.6e-48
Identity = 96/114 (84.21%), Postives = 101/114 (88.60%), Query Frame = 1


Query: 20  AIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGPGMPSIPNLPQPTFPTIQPS 79
           +ID+SRAAR LLQTAPPNMPGLPSLPK +G+PPLPPLPMGPG  SIPN PQPTFPTIQPS
Sbjct: 61  SIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGPGTSSIPNFPQPTFPTIQPS 120

Query: 80  LPKLPPLPSLPVNIPATGVVFPP----LPTLPSIPTTFPSIPFLTPPPATTSSP 130
           LPKLPPLPSLP+NIP TG V PP    LPTLPSIPTTFPSIPFLTPPPAT SSP
Sbjct: 121 LPKLPPLPSLPLNIPTTGAVLPPLTNSLPTLPSIPTTFPSIPFLTPPPATHSSP 174

[Close]

BLAST of Csa4G182290 vs. NCBI nr
Match: gi|700198739|gb|KGN53897.1| (hypothetical protein Csa_4G182280 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 5.3e-28
Identity = 72/127 (56.69%), Postives = 88/127 (69.29%), Query Frame = 1


Query: 10  LTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGPGMPSIPNLP 69
           LTFM T VFS++D++R +R LLQT   N+P +PSLPK   +PPLPP+P GP +PSIPN P
Sbjct: 9   LTFMVTCVFSSVDAARTSRHLLQTIL-NLPPMPSLPKPSALPPLPPMPTGPSIPSIPNFP 68

Query: 70  QPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPT--------LPSIPTTFP-SIPFLT 128
           QP+ P +      LPPLPSLP+NIP T V  PPLPT        L SI TT P S+PF +
Sbjct: 69  QPSLPKL-----TLPPLPSLPMNIP-TKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFFS 128

[Close]

BLAST of Csa4G182290 vs. NCBI nr
Match: gi|659125859|ref|XP_008462893.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo])

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 66/129 (51.16%), Postives = 86/129 (66.67%), Query Frame = 1


Query: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60
           M S K F+ + FMATL  S+I+  +AAR LLQT PP +P LP++P   G+PP P LP   
Sbjct: 1   MASSK-FLIIAFMATLALSSINFGQAARHLLQTTPPLVPNLPAIPT--GIPPFPALPN-- 60

Query: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120
             P++PNLPQPT P +      LPPLP+     P   +  P  P++P+IPT+FPSIPFL+
Sbjct: 61  --PTLPNLPQPTIPKVN-----LPPLPNGLALPPLPTMALPNFPSIPTIPTSFPSIPFLS 117

Query: 121 PPPATTSSP 130
           PPPAT+SSP
Sbjct: 121 PPPATSSSP 117

The following BLAST results are available for this feature:

BLAST of Csa4G182290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBM12_HUMAN	5.5e-09	38.68	RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE=1 SV=1	[more]
RBM12_MACMU	5.5e-09	38.68	RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 PE=2 SV=1	[more]
RBM12_PONAB	5.5e-09	38.68	RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1	[more]
RBM12_MOUSE	7.2e-09	38.32	RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3	[more]
FMN2_HUMAN	2.3e-07	40.38	Formin-2 OS=Homo sapiens GN=FMN2 PE=1 SV=4	[more]

BLAST of Csa4G182290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWI7_CUCSA	3.3e-69	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1	[more]
A0A0A0KZV3_CUCSA	3.7e-28	56.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1	[more]
U5G7A3_POPTR	2.8e-23	53.73	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03440g PE=4 SV=1	[more]
B9S9H3_RICCO	4.7e-23	54.26	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0885310 PE=4 SV=1	[more]
V7BTK6_PHAVU	6.1e-23	47.62	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G203000g PE=4 SV=1	[more]

BLAST of Csa4G182290 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15780.1	7.9e-14	42.73	Pollen Ole e 1 allergen and extensin family protein	[more]
AT4G38080.1	1.1e-12	41.09	hydroxyproline-rich glycoprotein family protein	[more]
AT2G22510.1	3.1e-10	41.07	hydroxyproline-rich glycoprotein family protein	[more]
AT2G34870.1	4.1e-10	36.36	hydroxyproline-rich glycoprotein family protein	[more]
AT3G02670.1	1.2e-09	39.18	Glycine-rich protein family	[more]

BLAST of Csa4G182290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697598\|ref\|XP_011654355.1\|	4.8e-69	100.00	PREDICTED: RNA-binding protein 12 [Cucumis sativus]	[more]
gi\|659108950\|ref\|XP_008454469.1\|	3.6e-48	84.21	PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X2 [Cucumis m...	[more]
gi\|659108948\|ref\|XP_008454468.1\|	3.6e-48	84.21	PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X1 [Cucumis m...	[more]
gi\|700198739\|gb\|KGN53897.1\|	5.3e-28	56.69	hypothetical protein Csa_4G182280 [Cucumis sativus]	[more]
gi\|659125859\|ref\|XP_008462893.1\|	1.5e-25	51.16	PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G182290.1	Csa4G182290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33088	FAMILY NOT NAMED	coord: 1..129 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G182290	Cla006499	Watermelon (97103) v1	cuwmB297
Csa4G182290	MELO3C018057	Melon (DHL92) v3.5.1	cumeB302
Csa4G182290	ClCG10G009590	Watermelon (Charleston Gray)	cuwcgB277
Csa4G182290	MELO3C018057.2	Melon (DHL92) v3.6.1	cumedB286
Csa4G182290	Cla97C10G192660	Watermelon (97103) v2	cuwmbB277
Csa4G182290	Bhi11G000864	Wax gourd	cuwgoB359
Csa4G182290	CSPI04G11870	Wild cucumber (PI 183967)	cpicuB184
Csa4G182290	Cucsa.331820	Cucumber (Gy14) v1	cgycuB469
Csa4G182290	CmaCh16G002720	Cucurbita maxima (Rimu)	cmacuB338
Csa4G182290	CmoCh16G002920	Cucurbita moschata (Rifu)	cmocuB327
Csa4G182290	Cp4.1LG14g04950	Cucurbita pepo (Zucchini)	cpecuB223

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G182290	Watermelon (97103) v1	cuwmB295
Csa4G182290	Watermelon (97103) v2	cuwmbB275