CmaCh16G002720 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G002720
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr16 : 1276835 .. 1277200 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTTCCAACTACTTCATCATGGCTTTCATGGCTACTTTGGTGTTTTCAGCCATCGACACCGGCCGAGCTGCTCGTCGTCTCCTGCAAACCGCTCAGCCGAGCGTGCCAGGGTTGCCCTCATTGCCGCCTCTACCGCCCTTCCCGACAGTACCGGGAATGCCCTCTATTCCAAATCTCCCACAGCCTACGTTGCCAACTACTCAACCTTCTCTCCCTAAGATGCCTCCTCTTCCTAGCTTCCCCGGTGGCATCCCGACCGGAGTGACATTGCCTCCACTCCCGACTCTACCGTCCTTCCCAACGACTTTCCCGTCGATCCCTTTCCTCACACCGCCCCCGGCCGCTACCTCTTCACCTTGA

mRNA sequence

ATGGCCTCTTCCAACTACTTCATCATGGCTTTCATGGCTACTTTGGTGTTTTCAGCCATCGACACCGGCCGAGCTGCTCGTCGTCTCCTGCAAACCGCTCAGCCGAGCGTGCCAGGGTTGCCCTCATTGCCGCCTCTACCGCCCTTCCCGACAGTACCGGGAATGCCCTCTATTCCAAATCTCCCACAGCCTACGTTGCCAACTACTCAACCTTCTCTCCCTAAGATGCCTCCTCTTCCTAGCTTCCCCGGTGGCATCCCGACCGGAGTGACATTGCCTCCACTCCCGACTCTACCGTCCTTCCCAACGACTTTCCCGTCGATCCCTTTCCTCACACCGCCCCCGGCCGCTACCTCTTCACCTTGA

Coding sequence (CDS)

ATGGCCTCTTCCAACTACTTCATCATGGCTTTCATGGCTACTTTGGTGTTTTCAGCCATCGACACCGGCCGAGCTGCTCGTCGTCTCCTGCAAACCGCTCAGCCGAGCGTGCCAGGGTTGCCCTCATTGCCGCCTCTACCGCCCTTCCCGACAGTACCGGGAATGCCCTCTATTCCAAATCTCCCACAGCCTACGTTGCCAACTACTCAACCTTCTCTCCCTAAGATGCCTCCTCTTCCTAGCTTCCCCGGTGGCATCCCGACCGGAGTGACATTGCCTCCACTCCCGACTCTACCGTCCTTCCCAACGACTTTCCCGTCGATCCCTTTCCTCACACCGCCCCCGGCCGCTACCTCTTCACCTTGA

Protein sequence

MASSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPPLPPFPTVPGMPSIPNLPQPTLPTTQPSLPKMPPLPSFPGGIPTGVTLPPLPTLPSFPTTFPSIPFLTPPPAATSSP

Homology

[Close]

BLAST of CmaCh16G002720 vs. TrEMBL
Match: A0A0A0KWI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-37
Identity = 97/129 (75.19%), Postives = 103/129 (79.84%), Query Frame = 1


Query: 1   MASSNYFI-MAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLP------PLPPFPTVP 60
           M S  YF+ + FMATLVFSAID+ RAARRLLQTA P++PGLPSLP      PLPP P  P
Sbjct: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60

Query: 61  GMPSIPNLPQPTLPTTQPSLPKMPPLPSFPGGIP-TGVTLPPLPTLPSFPTTFPSIPFLT 120
           GMPSIPNLPQPT PT QPSLPK+PPLPS P  IP TGV  PPLPTLPS PTTFPSIPFLT
Sbjct: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120

Query: 121 PPPAATSSP 122
           PPPA TSSP
Sbjct: 121 PPPATTSSP 129

[Close]

BLAST of CmaCh16G002720 vs. TrEMBL
Match: A0A0A0KZV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 74/135 (54.81%), Postives = 86/135 (63.70%), Query Frame = 1


Query: 1   MASSNYFIMAFMATLVFSAIDTGRAARRLLQTA-----QPSVPGLPSLPPLPPFPTVPGM 60
           MAS N FI+ FM T VFS++D  R +R LLQT       PS+P   +LPPLPP PT P +
Sbjct: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMPTGPSI 60

Query: 61  PSIPNLPQPTLPTTQPSLPKMPPLPSFPGGIPTGVTLPPLPT--LPSFP------TTFP- 120
           PSIPN PQP+LP        +PPLPS P  IPT V LPPLPT  LP+ P      TT P 
Sbjct: 61  PSIPNFPQPSLPKL-----TLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLPS 120

Query: 121 SIPFLTPPPAATSSP 122
           S+PF +PPP ATSSP
Sbjct: 121 SLPFFSPPP-ATSSP 129

[Close]

BLAST of CmaCh16G002720 vs. TrEMBL
Match: A0A061E279_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007394 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18
Identity = 74/133 (55.64%), Postives = 86/133 (64.66%), Query Frame = 1


Query: 1   MASSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPPLPPFPTVPG-----M 60
           MAS N FI+AF   L FS+I+ G+AAR LLQ           LPPLPP PT+PG     +
Sbjct: 1   MASFNCFILAFFMALSFSSINVGQAARHLLQ-----------LPPLPPMPTLPGATLPPL 60

Query: 61  PSIPNLPQPT---LPTTQPSLPK---MPPLPSFPGGIPTGVTLPPLPTLP---SFPTTFP 120
           PSIPNLPQPT   LPTT PSLPK   +PPLP+ P      V LPPLP+LP   + PTT P
Sbjct: 61  PSIPNLPQPTIPTLPTTLPSLPKPGTLPPLPTIPTA--PKVALPPLPSLPLVPTIPTTIP 120

[Close]

BLAST of CmaCh16G002720 vs. TrEMBL
Match: A0A061GNQ9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038432 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-18
Identity = 75/135 (55.56%), Postives = 88/135 (65.19%), Query Frame = 1


Query: 1   MASSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPPLPPFP--TVPGMPSI 60
           MAS N F++AF     FS+I+ G AAR LLQ        +P LPP+P  P  T+P +PSI
Sbjct: 1   MASFNCFVLAFFMAFSFSSINVGLAARYLLQ--------MPPLPPMPTLPRATLPPLPSI 60

Query: 61  PNLPQP---TLPTTQPSLPK---MPPLPSFPGGIPT-----GVTLPPLPTLPS---FPTT 120
           PNLPQP   TLPTTQPSLPK   +PPLPS P  +PT      +TLPPLP +PS    PTT
Sbjct: 61  PNLPQPTTPTLPTTQPSLPKPGTLPPLPSMP-TLPTIPNTPKITLPPLPNMPSIPTIPTT 120

[Close]

BLAST of CmaCh16G002720 vs. TrEMBL
Match: A0A067KXM2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24965 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.5e-18
Identity = 73/125 (58.40%), Postives = 85/125 (68.00%), Query Frame = 1


Query: 1   MASSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPPLPPFPTVPGMPS-IP 60
           MAS NY I+AF   + FS +D G AAR LLQ     +P LPS+P LP  PT+P +PS IP
Sbjct: 1   MASFNYIILAFFVAISFSCMDVGIAARHLLQ-----LPPLPSMPNLPK-PTLPPLPSNIP 60

Query: 61  NLPQPT---LPTTQPSLP---KMPPLPSFP--GGIPTGVTLPPLPTLPSFPTTFPSIPFL 117
            LPQPT   LPTTQPSLP    +PPLPS P    +P   TLPPLP++PS PTT PSIPF 
Sbjct: 61  TLPQPTLPNLPTTQPSLPNPTSLPPLPSLPTMPAVPK-ATLPPLPSMPSIPTTIPSIPFF 118

[Close]

BLAST of CmaCh16G002720 vs. TAIR10
Match: AT4G38080.1 (AT4G38080.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.5e-06
Identity = 47/123 (38.21%), Postives = 69/123 (56.10%), Query Frame = 1


Query: 5   NYFIMAFMATLVFSAIDTGRAARR-LLQTAQPSVPGLPSLPPLPPFPTVPGMPSIPNLPQ 64
           N F+ + +  L F++  T  +A R LLQ+   + P   + PPLP   T+P +PS+P   Q
Sbjct: 6   NSFVTSLVIALTFTSFFTSLSAHRHLLQSTPVTQPPALTFPPLPK-TTMPPVPSLPTPGQ 65

Query: 65  PTLPTTQPSLPK---MPPLPSFPGGIPTGVTLPPLPTLP--SFPTTFP-----SIPFLTP 117
            TLP  QP+LP+   +PP+PS           P +P +P  +FP+ FP     +IPFLTP
Sbjct: 66  QTLPQPQPTLPQPTGLPPMPSTQIPSLPNQVQPTIPNIPQINFPSNFPFNFPFNIPFLTP 125

[Close]

BLAST of CmaCh16G002720 vs. TAIR10
Match: AT5G15780.1 (AT5G15780.1 Pollen Ole e 1 allergen and extensin family protein)

HSP 1 Score: 47.8 bits (112), Expect = 5.7e-06
Identity = 39/87 (44.83%), Postives = 47/87 (54.02%), Query Frame = 1


Query: 35  PSVPGLPSLPPLPPFPTVPGMPSIPNLPQPTLPTTQPSLPKMPPLPSFPGGIPTGVTLPP 94
           P +P  PSLPP+P  PT P +P+IP LP P  PT       +PP+P+ P       TLPP
Sbjct: 290 PLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTPT-------LPPIPTIP-------TLPP 349

Query: 95  LPTLPSFPTTFPSIPFLTPPPAATSSP 122
           LP LP  P   P  P L PPP +   P
Sbjct: 350 LPVLPPVPIVNP--PSLPPPPPSFPVP 360

[Close]

BLAST of CmaCh16G002720 vs. NCBI nr
Match: gi|778697598|ref|XP_011654355.1| (PREDICTED: RNA-binding protein 12 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 3.4e-37
Identity = 97/129 (75.19%), Postives = 103/129 (79.84%), Query Frame = 1


Query: 1   MASSNYFI-MAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLP------PLPPFPTVP 60
           M S  YF+ + FMATLVFSAID+ RAARRLLQTA P++PGLPSLP      PLPP P  P
Sbjct: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60

Query: 61  GMPSIPNLPQPTLPTTQPSLPKMPPLPSFPGGIP-TGVTLPPLPTLPSFPTTFPSIPFLT 120
           GMPSIPNLPQPT PT QPSLPK+PPLPS P  IP TGV  PPLPTLPS PTTFPSIPFLT
Sbjct: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120

Query: 121 PPPAATSSP 122
           PPPA TSSP
Sbjct: 121 PPPATTSSP 129

[Close]

BLAST of CmaCh16G002720 vs. NCBI nr
Match: gi|659108948|ref|XP_008454468.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X1 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-26
Identity = 80/114 (70.18%), Postives = 84/114 (73.68%), Query Frame = 1


Query: 19  AIDTGRAARRLLQTAQPSVPGLPSLP------PLPPFPTVPGMPSIPNLPQPTLPTTQPS 78
           +IDT RAAR LLQTA P++PGLPSLP      PLPP P  PG  SIPN PQPT PT QPS
Sbjct: 61  SIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGPGTSSIPNFPQPTFPTIQPS 120

Query: 79  LPKMPPLPSFPGGIP-TGVTLPP----LPTLPSFPTTFPSIPFLTPPPAATSSP 122
           LPK+PPLPS P  IP TG  LPP    LPTLPS PTTFPSIPFLTPPPA  SSP
Sbjct: 121 LPKLPPLPSLPLNIPTTGAVLPPLTNSLPTLPSIPTTFPSIPFLTPPPATHSSP 174

[Close]

BLAST of CmaCh16G002720 vs. NCBI nr
Match: gi|659108950|ref|XP_008454469.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X2 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-26
Identity = 80/114 (70.18%), Postives = 84/114 (73.68%), Query Frame = 1


Query: 19  AIDTGRAARRLLQTAQPSVPGLPSLP------PLPPFPTVPGMPSIPNLPQPTLPTTQPS 78
           +IDT RAAR LLQTA P++PGLPSLP      PLPP P  PG  SIPN PQPT PT QPS
Sbjct: 31  SIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGPGTSSIPNFPQPTFPTIQPS 90

Query: 79  LPKMPPLPSFPGGIP-TGVTLPP----LPTLPSFPTTFPSIPFLTPPPAATSSP 122
           LPK+PPLPS P  IP TG  LPP    LPTLPS PTTFPSIPFLTPPPA  SSP
Sbjct: 91  LPKLPPLPSLPLNIPTTGAVLPPLTNSLPTLPSIPTTFPSIPFLTPPPATHSSP 144

[Close]

BLAST of CmaCh16G002720 vs. NCBI nr
Match: gi|659125859|ref|XP_008462893.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-19
Identity = 68/126 (53.97%), Postives = 89/126 (70.63%), Query Frame = 1


Query: 1   MASSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPP-LPPFPTVPGMPSIP 60
           MASS + I+AFMATL  S+I+ G+AAR LLQT  P VP LP++P  +PPFP +P  P++P
Sbjct: 1   MASSKFLIIAFMATLALSSINFGQAARHLLQTTPPLVPNLPAIPTGIPPFPALPN-PTLP 60

Query: 61  NLPQPTLPTTQ-PSLPK---MPPLPSFPGGIPTGVTLPPLPTLPSFPTTFPSIPFLTPPP 120
           NLPQPT+P    P LP    +PPLP+        + LP  P++P+ PT+FPSIPFL+PPP
Sbjct: 61  NLPQPTIPKVNLPPLPNGLALPPLPT--------MALPNFPSIPTIPTSFPSIPFLSPPP 117

Query: 121 AATSSP 122
           A +SSP
Sbjct: 121 ATSSSP 117

[Close]

BLAST of CmaCh16G002720 vs. NCBI nr
Match: gi|590688150|ref|XP_007042866.1| (Uncharacterized protein TCM_007394 [Theobroma cacao])

HSP 1 Score: 100.5 bits (249), Expect = 2.1e-18
Identity = 74/133 (55.64%), Postives = 86/133 (64.66%), Query Frame = 1


Query: 1   MASSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPPLPPFPTVPG-----M 60
           MAS N FI+AF   L FS+I+ G+AAR LLQ           LPPLPP PT+PG     +
Sbjct: 1   MASFNCFILAFFMALSFSSINVGQAARHLLQ-----------LPPLPPMPTLPGATLPPL 60

Query: 61  PSIPNLPQPT---LPTTQPSLPK---MPPLPSFPGGIPTGVTLPPLPTLP---SFPTTFP 120
           PSIPNLPQPT   LPTT PSLPK   +PPLP+ P      V LPPLP+LP   + PTT P
Sbjct: 61  PSIPNLPQPTIPTLPTTLPSLPKPGTLPPLPTIPTA--PKVALPPLPSLPLVPTIPTTIP 120

The following BLAST results are available for this feature:

BLAST of CmaCh16G002720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G002720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWI7_CUCSA	2.4e-37	75.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1	[more]
A0A0A0KZV3_CUCSA	1.5e-18	54.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1	[more]
A0A061E279_THECC	1.5e-18	55.64	Uncharacterized protein OS=Theobroma cacao GN=TCM_007394 PE=4 SV=1	[more]
A0A061GNQ9_THECC	2.5e-18	55.56	Uncharacterized protein OS=Theobroma cacao GN=TCM_038432 PE=4 SV=1	[more]
A0A067KXM2_JATCU	5.5e-18	58.40	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24965 PE=4 SV=1	[more]

BLAST of CmaCh16G002720 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38080.1	2.5e-06	38.21	hydroxyproline-rich glycoprotein family protein	[more]
AT5G15780.1	5.7e-06	44.83	Pollen Ole e 1 allergen and extensin family protein	[more]

BLAST of CmaCh16G002720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697598\|ref\|XP_011654355.1\|	3.4e-37	75.19	PREDICTED: RNA-binding protein 12 [Cucumis sativus]	[more]
gi\|659108948\|ref\|XP_008454468.1\|	1.6e-26	70.18	PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X1 [Cucumis m...	[more]
gi\|659108950\|ref\|XP_008454469.1\|	1.6e-26	70.18	PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X2 [Cucumis m...	[more]
gi\|659125859\|ref\|XP_008462893.1\|	2.5e-19	53.97	PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo]	[more]
gi\|590688150\|ref\|XP_007042866.1\|	2.1e-18	55.64	Uncharacterized protein TCM_007394 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G002720.1	CmaCh16G002720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33088	FAMILY NOT NAMED	coord: 1..121 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G002720	Cucsa.331820	Cucumber (Gy14) v1	cgycmaB0910
CmaCh16G002720	Csa4G182290	Cucumber (Chinese Long) v2	cmacuB338
CmaCh16G002720	MELO3C018057	Melon (DHL92) v3.5.1	cmameB303
CmaCh16G002720	CSPI04G11870	Wild cucumber (PI 183967)	cmacpiB343
CmaCh16G002720	CmoCh16G002920	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G002720	Cp4.1LG14g04950	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G002720	CsaV3_4G014790	Cucumber (Chinese Long) v3	cmacucB0394

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G002720	Silver-seed gourd	carcmaB0400
CmaCh16G002720	Silver-seed gourd	carcmaB0406
CmaCh16G002720	Silver-seed gourd	carcmaB0526
CmaCh16G002720	Watermelon (97103) v2	cmawmbB332
CmaCh16G002720	Wax gourd	cmawgoB0410
CmaCh16G002720	Cucurbita maxima (Rimu)	cmacmaB135
CmaCh16G002720	Cucurbita maxima (Rimu)	cmacmaB342
CmaCh16G002720	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh16G002720	Cucurbita moschata (Rifu)	cmacmoB330
CmaCh16G002720	Cucurbita moschata (Rifu)	cmacmoB338
CmaCh16G002720	Watermelon (Charleston Gray)	cmawcgB280
CmaCh16G002720	Watermelon (97103) v1	cmawmB293
CmaCh16G002720	Cucurbita pepo (Zucchini)	cmacpeB351
CmaCh16G002720	Bottle gourd (USVL1VR-Ls)	cmalsiB307
CmaCh16G002720	Melon (DHL92) v3.6.1	cmamedB331
CmaCh16G002720	Melon (DHL92) v3.6.1	cmamedB354