CsaV3_4G014790 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G014790
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 10237842 .. 10238496 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCAAATCACTCAAACCTCCATAATTTTCTTCATACGTATGGCTTCTTTCAACTGCTTCATTCTCACCTTCATGGTTACTTGCGTATTTTCAAGCGTGGATGCTGCTCGAACTTCTCGACATCTTCTGCAGACCATTCTAAATTTGCCACCAATGCCATCACTACCTAAGCCATCTGCACTACCGCCTCTACCACCAATGCCGACCGGTCCGAGTATTCCATCCATCCCAAACTTCCCACAACCTTCCCTCCCTAAGCTTACACTTCCTCCACTTCCAAGCCTCCCCATGAATATCCCAACCAAAGTACCGTTGCCTCCTCTCCCCACAACTTCGCTTCCAAACTTGCCATTCCTCTCATCAATCTCGACTACACTTCCGTCGTCGCTCCCATTCTTCTCTCCTCCACCTGCAACTTCTTCTCCTTGAGTTCCGTACAGAATAGCTGTTTTTGTGACGCTTGATTGTTTTCATGTATGTAACTGATGATGCTTTTTGAGTGTGTTGTTGTTTCAGTTACGTTTGTATTGTATTGTTTCACACATATATGAAAACAAAAAAAAATACTATTTTCCTACTTGGCTTCTGGACTCAAATATGAAAAGAAAAAAAAAACGTTGAATTTACATTATTTATTATTTTAGCTATAAGGTTT

mRNA sequence

ATGGCTTCTTTCAACTGCTTCATTCTCACCTTCATGGTTACTTGCGTATTTTCAAGCGTGGATGCTGCTCGAACTTCTCGACATCTTCTGCAGACCATTCTAAATTTGCCACCAATGCCATCACTACCTAAGCCATCTGCACTACCGCCTCTACCACCAATGCCGACCGGTCCGAGTATTCCATCCATCCCAAACTTCCCACAACCTTCCCTCCCTAAGCTTACACTTCCTCCACTTCCAAGCCTCCCCATGAATATCCCAACCAAAGTACCGTTGCCTCCTCTCCCCACAACTTCGCTTCCAAACTTGCCATTCCTCTCATCAATCTCGACTACACTTCCGTCGTCGCTCCCATTCTTCTCTCCTCCACCTGCAACTTCTTCTCCTTGA

Coding sequence (CDS)

ATGGCTTCTTTCAACTGCTTCATTCTCACCTTCATGGTTACTTGCGTATTTTCAAGCGTGGATGCTGCTCGAACTTCTCGACATCTTCTGCAGACCATTCTAAATTTGCCACCAATGCCATCACTACCTAAGCCATCTGCACTACCGCCTCTACCACCAATGCCGACCGGTCCGAGTATTCCATCCATCCCAAACTTCCCACAACCTTCCCTCCCTAAGCTTACACTTCCTCCACTTCCAAGCCTCCCCATGAATATCCCAACCAAAGTACCGTTGCCTCCTCTCCCCACAACTTCGCTTCCAAACTTGCCATTCCTCTCATCAATCTCGACTACACTTCCGTCGTCGCTCCCATTCTTCTCTCCTCCACCTGCAACTTCTTCTCCTTGA

Protein sequence

MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMPTGPSIPSIPNFPQPSLPKLTLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFFSPPPATSSP
Homology
[Close]
BLAST of CsaV3_4G014790 vs. NCBI nr
Match: KGN53897.1 (hypothetical protein Csa_4G182280 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 1.0e-11
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLXXXXXXXXXXXXXXXXXXXXXXXX 60
           MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTLPSSLPFF 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTLPSSLPFF
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTLPSSLPFF 120

Query: 121 SPPPATSSP 130
           SPPPATSSP
Sbjct: 121 SPPPATSSP 129

[Close]
BLAST of CsaV3_4G014790 vs. TrEMBL
Match: tr|A0A0A0KZV3|A0A0A0KZV3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182280 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.9e-12
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLXXXXXXXXXXXXXXXXXXXXXXXX 60
           MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTLPSSLPFF 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTLPSSLPFF
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTLPSSLPFF 120

Query: 121 SPPPATSSP 130
           SPPPATSSP
Sbjct: 121 SPPPATSSP 129

The following BLAST results are available for this feature:
BLAST of CsaV3_4G014790 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53897.11.0e-11100.00hypothetical protein Csa_4G182280 [Cucumis sativus][more]
BLAST of CsaV3_4G014790 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G014790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G014790 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZV3|A0A0A0KZV3_CUCSA6.9e-12100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182280 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G014790.1CsaV3_4G014790.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..69
NoneNo IPR availablePANTHERPTHR33088FAMILY NOT NAMEDcoord: 1..125
NoneNo IPR availablePANTHERPTHR33088:SF5SUBFAMILY NOT NAMEDcoord: 1..125

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G014790CmaCh16G002720Cucurbita maxima (Rimu)cmacucB0394
CsaV3_4G014790Cla006500Watermelon (97103) v1cucwmB307
CsaV3_4G014790ClCG10G009570Watermelon (Charleston Gray)cucwcgB286
CsaV3_4G014790Lsi03G009700Bottle gourd (USVL1VR-Ls)cuclsiB301
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G014790Wax gourdcucwgoB363
CsaV3_4G014790Cucumber (Gy14) v2cgybcucB171
CsaV3_4G014790Cucumber (Gy14) v1cgycucB512
CsaV3_4G014790Cucurbita moschata (Rifu)cmocucB0390
CsaV3_4G014790Cucurbita pepo (Zucchini)cpecucB0268
CsaV3_4G014790Wild cucumber (PI 183967)cpicucB213
CsaV3_4G014790Melon (DHL92) v3.5.1cucmeB302
CsaV3_4G014790Melon (DHL92) v3.6.1cucmedB294
CsaV3_4G014790Watermelon (97103) v2cucwmbB279