Lsi03G009700 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G009700
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr03 : 18805792 .. 18806172 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCCAACTACTTCATCCTTGCCATCATGGTTGTTTTGACATTTTCAAGCGTCGATGCTGGTCGAACTACTCGGTATCTTCTGCAGACAATTCCAAATTTGCTACCAATGCCATCGCTACCTAAGCCATCTGCGCTACCGCCTCTACCACCGTTGCCAATATTGCCAAACCCTACGACTGGTCCGAGTATTCCATCCATCCCAAATTTTCCACAACCTTCGCTCCCTAAGCTTACACTTCCTCCACTTCCAAGTTTTTCTATGAACATCCCAACAATTTCGCTTCCAAACCTGCCATCCCTCCCATTAATCCCAACTACACTTCCATCGTCGCTCCCATTCTTCCCTCCTCCTCCTACAATTTCTTCTCCTTGA

mRNA sequence

ATGGCTTCTTCCAACTACTTCATCCTTGCCATCATGGTTGTTTTGACATTTTCAAGCGTCGATGCTGGTCGAACTACTCGGTATCTTCTGCAGACAATTCCAAATTTGCTACCAATGCCATCGCTACCTAAGCCATCTGCGCTACCGCCTCTACCACCGTTGCCAATATTGCCAAACCCTACGACTGGTCCGAGTATTCCATCCATCCCAAATTTTCCACAACCTTCGCTCCCTAAGCTTACACTTCCTCCACTTCCAAGTTTTTCTATGAACATCCCAACAATTTCGCTTCCAAACCTGCCATCCCTCCCATTAATCCCAACTACACTTCCATCGTCGCTCCCATTCTTCCCTCCTCCTCCTACAATTTCTTCTCCTTGA

Coding sequence (CDS)

ATGGCTTCTTCCAACTACTTCATCCTTGCCATCATGGTTGTTTTGACATTTTCAAGCGTCGATGCTGGTCGAACTACTCGGTATCTTCTGCAGACAATTCCAAATTTGCTACCAATGCCATCGCTACCTAAGCCATCTGCGCTACCGCCTCTACCACCGTTGCCAATATTGCCAAACCCTACGACTGGTCCGAGTATTCCATCCATCCCAAATTTTCCACAACCTTCGCTCCCTAAGCTTACACTTCCTCCACTTCCAAGTTTTTCTATGAACATCCCAACAATTTCGCTTCCAAACCTGCCATCCCTCCCATTAATCCCAACTACACTTCCATCGTCGCTCCCATTCTTCCCTCCTCCTCCTACAATTTCTTCTCCTTGA

Protein sequence

MASSNYFILAIMVVLTFSSVDAGRTTRYLLQTIPNLLPMPSLPKPSALPPLPPLPILPNPTTGPSIPSIPNFPQPSLPKLTLPPLPSFSMNIPTISLPNLPSLPLIPTTLPSSLPFFPPPPTISSP

Homology

[Close]

BLAST of Lsi03G009700 vs. TrEMBL
Match: A0A0A0KZV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-34
Identity = 97/135 (71.85%), Postives = 100/135 (74.07%), Query Frame = 1


Query: 1   MASSNYFILAIMVVLTFSSVDAGRTTRYLLQTIPNLLPMPSLPKPSALPPLPPLPILPNP 60
           MAS N FIL  MV   FSSVDA RT+R+LLQTI NL PMPSLPKPSALPPLPP+P     
Sbjct: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMP----- 60

Query: 61  TTGPSIPSIPNFPQPSLPKLTLPPLPSFSMNI---------PTISLPNLPSLPLIPTTLP 120
            TGPSIPSIPNFPQPSLPKLTLPPLPS  MNI         PT SLPNLP L  I TTLP
Sbjct: 61  -TGPSIPSIPNFPQPSLPKLTLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLP 120

Query: 121 SSLPFFPPPPTISSP 127
           SSLPFF PPP  SSP
Sbjct: 121 SSLPFFSPPPATSSP 129

[Close]

BLAST of Lsi03G009700 vs. TrEMBL
Match: A0A0A0KWI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-16
Identity = 70/136 (51.47%), Postives = 85/136 (62.50%), Query Frame = 1


Query: 1   MASSNYFI-LAIMVVLTFSSVDAGRTTRYLLQTIPNLLP-MPSLPKPSALPPLPPLPILP 60
           M S  YF+ L  M  L FS++D+ R  R LLQT P  +P +PSLPK   +PPLPPLP+  
Sbjct: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPM-- 60

Query: 61  NPTTGPSIPSIPNFPQPSLPKLT-----LPPLPSFSMNIPT--ISLPNLPSLPLIPTTLP 120
               GP +PSIPN PQP+ P +      LPPLPS  +NIP   +  P LP+LP IPTT P
Sbjct: 61  ----GPGMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFP 120

Query: 121 SSLPFF-PPPPTISSP 127
            S+PF  PPP T SSP
Sbjct: 121 -SIPFLTPPPATTSSP 129

[Close]

BLAST of Lsi03G009700 vs. TrEMBL
Match: A0A0B2QBL6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_029868 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.1e-16
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = 1


Query: 1   MASSNYFILAIMVVLTFSSVDAGRTTRYLLQT--IPNLLPMPSLPKPSALPPLPPLPILP 60
           MASS  FI A ++ LTFSS+      R+L+QT   PNL  +PSLP P+ LPPLP LP LP
Sbjct: 1   MASSKLFITAFLLALTFSSMSMSLAARHLMQTSTAPNLPGIPSLPSPT-LPPLPSLPTLP 60

Query: 61  NPTTGPSIPSIPNFPQPSLPKL--TLPPLPSFSMNIPTISLPNLPSLPLIPTTLPSSLPF 120
                P +P+IP  PQP+LP L  TLPPLPS    IPT+   N+P LP IPTT+P S+PF
Sbjct: 61  QANV-PPLPTIPTLPQPNLPSLPTTLPPLPSSIPTIPTLPQLNIPPLPSIPTTMP-SIPF 120

Query: 121 FPPPPT 123
             PPP+
Sbjct: 121 LSPPPS 123

[Close]

BLAST of Lsi03G009700 vs. TrEMBL
Match: I1M2P0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G257800 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.1e-16
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = 1


Query: 1   MASSNYFILAIMVVLTFSSVDAGRTTRYLLQT--IPNLLPMPSLPKPSALPPLPPLPILP 60
           MASS  FI A ++ LTFSS+      R+L+QT   PNL  +PSLP P+ LPPLP LP LP
Sbjct: 1   MASSKLFITAFLLALTFSSMSMSLAARHLMQTSTAPNLPGIPSLPSPT-LPPLPSLPTLP 60

Query: 61  NPTTGPSIPSIPNFPQPSLPKL--TLPPLPSFSMNIPTISLPNLPSLPLIPTTLPSSLPF 120
                P +P+IP  PQP+LP L  TLPPLPS    IPT+   N+P LP IPTT+P S+PF
Sbjct: 61  QANV-PPLPTIPTLPQPNLPSLPTTLPPLPSSIPTIPTLPQLNIPPLPSIPTTMP-SIPF 120

Query: 121 FPPPPT 123
             PPP+
Sbjct: 121 LSPPPS 123

[Close]

BLAST of Lsi03G009700 vs. TrEMBL
Match: A0A061GNQ9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038432 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-16
Identity = 72/136 (52.94%), Postives = 91/136 (66.91%), Query Frame = 1


Query: 1   MASSNYFILAIMVVLTFSSVDAGRTTRYLLQTIPNLLPMPSLPKPSALPPLPPLPILPNP 60
           MAS N F+LA  +  +FSS++ G   RYLLQ +P L PMP+LP+ + LPPLP +P LP P
Sbjct: 1   MASFNCFVLAFFMAFSFSSINVGLAARYLLQ-MPPLPPMPTLPR-ATLPPLPSIPNLPQP 60

Query: 61  TTGPSIPSIPNFPQPSLPKL-TLPPLPSFSMNIPTI---------SLPNLPSLPLIPTTL 120
           TT P++P+     QPSLPK  TLPPLPS    +PTI          LPN+PS+P IPTT+
Sbjct: 61  TT-PTLPT----TQPSLPKPGTLPPLPSMP-TLPTIPNTPKITLPPLPNMPSIPTIPTTI 120

Query: 121 PSSLPFFPPPPTISSP 127
           P S+PFF PPP  +SP
Sbjct: 121 P-SIPFFSPPPAKTSP 127

[Close]

BLAST of Lsi03G009700 vs. TAIR10
Match: AT5G15780.1 (AT5G15780.1 Pollen Ole e 1 allergen and extensin family protein)

HSP 1 Score: 48.1 bits (113), Expect = 4.5e-06
Identity = 44/93 (47.31%), Postives = 54/93 (58.06%), Query Frame = 1


Query: 34  PNLLPMPSLPKPSALPPLPPLPILPNPTTGPSIPSIPNFPQPSLPKLTLPPLPSFSMNIP 93
           P L P P +P P   P LPP+P++P P T P+IP +P  P P     TLPP+P+    IP
Sbjct: 284 PTLPPNPLIPSP---PSLPPIPLIPTPPTLPTIPLLPTPPTP-----TLPPIPT----IP 343

Query: 94  TISLPNLPSLPLIPTTLPSSLPFFPPPPTISSP 127
           T  LP LP LP +P   P SLP  PPPP+   P
Sbjct: 344 T--LPPLPVLPPVPIVNPPSLP--PPPPSFPVP 360

[Close]

BLAST of Lsi03G009700 vs. NCBI nr
Match: gi|700198739|gb|KGN53897.1| (hypothetical protein Csa_4G182280 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 2.8e-34
Identity = 97/135 (71.85%), Postives = 100/135 (74.07%), Query Frame = 1


Query: 1   MASSNYFILAIMVVLTFSSVDAGRTTRYLLQTIPNLLPMPSLPKPSALPPLPPLPILPNP 60
           MAS N FIL  MV   FSSVDA RT+R+LLQTI NL PMPSLPKPSALPPLPP+P     
Sbjct: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMP----- 60

Query: 61  TTGPSIPSIPNFPQPSLPKLTLPPLPSFSMNI---------PTISLPNLPSLPLIPTTLP 120
            TGPSIPSIPNFPQPSLPKLTLPPLPS  MNI         PT SLPNLP L  I TTLP
Sbjct: 61  -TGPSIPSIPNFPQPSLPKLTLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLP 120

Query: 121 SSLPFFPPPPTISSP 127
           SSLPFF PPP  SSP
Sbjct: 121 SSLPFFSPPPATSSP 129

[Close]

BLAST of Lsi03G009700 vs. NCBI nr
Match: gi|778697598|ref|XP_011654355.1| (PREDICTED: RNA-binding protein 12 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-16
Identity = 70/136 (51.47%), Postives = 85/136 (62.50%), Query Frame = 1


Query: 1   MASSNYFI-LAIMVVLTFSSVDAGRTTRYLLQTIPNLLP-MPSLPKPSALPPLPPLPILP 60
           M S  YF+ L  M  L FS++D+ R  R LLQT P  +P +PSLPK   +PPLPPLP+  
Sbjct: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPM-- 60

Query: 61  NPTTGPSIPSIPNFPQPSLPKLT-----LPPLPSFSMNIPT--ISLPNLPSLPLIPTTLP 120
               GP +PSIPN PQP+ P +      LPPLPS  +NIP   +  P LP+LP IPTT P
Sbjct: 61  ----GPGMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFP 120

Query: 121 SSLPFF-PPPPTISSP 127
            S+PF  PPP T SSP
Sbjct: 121 -SIPFLTPPPATTSSP 129

[Close]

BLAST of Lsi03G009700 vs. NCBI nr
Match: gi|955359199|ref|XP_014621341.1| (PREDICTED: verprolin-like [Glycine max])

HSP 1 Score: 92.4 bits (228), Expect = 5.9e-16
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = 1


Query: 1   MASSNYFILAIMVVLTFSSVDAGRTTRYLLQT--IPNLLPMPSLPKPSALPPLPPLPILP 60
           MASS  FI A ++ LTFSS+      R+L+QT   PNL  +PSLP P+ LPPLP LP LP
Sbjct: 1   MASSKLFITAFLLALTFSSMSMSLAARHLMQTSTAPNLPGIPSLPSPT-LPPLPSLPTLP 60

Query: 61  NPTTGPSIPSIPNFPQPSLPKL--TLPPLPSFSMNIPTISLPNLPSLPLIPTTLPSSLPF 120
                P +P+IP  PQP+LP L  TLPPLPS    IPT+   N+P LP IPTT+P S+PF
Sbjct: 61  QANV-PPLPTIPTLPQPNLPSLPTTLPPLPSSIPTIPTLPQLNIPPLPSIPTTMP-SIPF 120

Query: 121 FPPPPT 123
             PPP+
Sbjct: 121 LSPPPS 123

[Close]

BLAST of Lsi03G009700 vs. NCBI nr
Match: gi|590579792|ref|XP_007013886.1| (Uncharacterized protein TCM_038432 [Theobroma cacao])

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 72/136 (52.94%), Postives = 91/136 (66.91%), Query Frame = 1


Query: 1   MASSNYFILAIMVVLTFSSVDAGRTTRYLLQTIPNLLPMPSLPKPSALPPLPPLPILPNP 60
           MAS N F+LA  +  +FSS++ G   RYLLQ +P L PMP+LP+ + LPPLP +P LP P
Sbjct: 1   MASFNCFVLAFFMAFSFSSINVGLAARYLLQ-MPPLPPMPTLPR-ATLPPLPSIPNLPQP 60

Query: 61  TTGPSIPSIPNFPQPSLPKL-TLPPLPSFSMNIPTI---------SLPNLPSLPLIPTTL 120
           TT P++P+     QPSLPK  TLPPLPS    +PTI          LPN+PS+P IPTT+
Sbjct: 61  TT-PTLPT----TQPSLPKPGTLPPLPSMP-TLPTIPNTPKITLPPLPNMPSIPTIPTTI 120

Query: 121 PSSLPFFPPPPTISSP 127
           P S+PFF PPP  +SP
Sbjct: 121 P-SIPFFSPPPAKTSP 127

[Close]

BLAST of Lsi03G009700 vs. NCBI nr
Match: gi|802578020|ref|XP_012069306.1| (PREDICTED: pre-mRNA polyadenylation factor FIP1-like [Jatropha curcas])

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 68/124 (54.84%), Postives = 82/124 (66.13%), Query Frame = 1


Query: 1   MASSNYFILAIMVVLTFSSVDAGRTTRYLLQTIPNLLPMPSLPK-PSALP--PLPPLPIL 60
           MAS NYFILA+ + L FSS+D     R LLQ +P L  MP+LP  P+ +P  P P LP L
Sbjct: 1   MASFNYFILALCIALFFSSIDVSVAARNLLQ-LPPLPSMPNLPSIPTNIPTLPQPTLPNL 60

Query: 61  PNPTTGPSIPSIPNFPQPSLPKLTLPPLPSFSMNIPTISLPNLPSLPLIPTTLPSSLPFF 120
           PNPTT P +PS+PN   P++PKLTLPPLPS            LPS+P IPTT+P S+PFF
Sbjct: 61  PNPTTPPPLPSLPN--MPTVPKLTLPPLPS------------LPSMPTIPTTIP-SIPFF 108

Query: 121 PPPP 122
            PPP
Sbjct: 121 SPPP 108

The following BLAST results are available for this feature:

BLAST of Lsi03G009700 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G009700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZV3_CUCSA	2.0e-34	71.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1	[more]
A0A0A0KWI7_CUCSA	2.4e-16	51.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1	[more]
A0A0B2QBL6_GLYSO	4.1e-16	53.97	Uncharacterized protein OS=Glycine soja GN=glysoja_029868 PE=4 SV=1	[more]
I1M2P0_SOYBN	4.1e-16	53.97	Uncharacterized protein OS=Glycine max GN=GLYMA_13G257800 PE=4 SV=1	[more]
A0A061GNQ9_THECC	7.1e-16	52.94	Uncharacterized protein OS=Theobroma cacao GN=TCM_038432 PE=4 SV=1	[more]

BLAST of Lsi03G009700 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15780.1	4.5e-06	47.31	Pollen Ole e 1 allergen and extensin family protein	[more]

BLAST of Lsi03G009700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198739\|gb\|KGN53897.1\|	2.8e-34	71.85	hypothetical protein Csa_4G182280 [Cucumis sativus]	[more]
gi\|778697598\|ref\|XP_011654355.1\|	3.5e-16	51.47	PREDICTED: RNA-binding protein 12 [Cucumis sativus]	[more]
gi\|955359199\|ref\|XP_014621341.1\|	5.9e-16	53.97	PREDICTED: verprolin-like [Glycine max]	[more]
gi\|590579792\|ref\|XP_007013886.1\|	1.0e-15	52.94	Uncharacterized protein TCM_038432 [Theobroma cacao]	[more]
gi\|802578020\|ref\|XP_012069306.1\|	1.7e-15	54.84	PREDICTED: pre-mRNA polyadenylation factor FIP1-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G009700.1	Lsi03G009700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33088	FAMILY NOT NAMED	coord: 1..126 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G009700	CsaV3_4G014790	Cucumber (Chinese Long) v3	cuclsiB301

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G009700	Cucumber (Gy14) v2	cgyblsiB487
Lsi03G009700	Melon (DHL92) v3.6.1	lsimedB265
Lsi03G009700	Melon (DHL92) v3.6.1	lsimedB282
Lsi03G009700	Silver-seed gourd	carlsiB263
Lsi03G009700	Silver-seed gourd	carlsiB269
Lsi03G009700	Silver-seed gourd	carlsiB341
Lsi03G009700	Cucumber (Chinese Long) v3	cuclsiB554
Lsi03G009700	Watermelon (97103) v2	lsiwmbB218
Lsi03G009700	Wax gourd	lsiwgoB292
Lsi03G009700	Cucumber (Gy14) v1	cgylsiB366
Lsi03G009700	Cucurbita maxima (Rimu)	cmalsiB115
Lsi03G009700	Cucurbita maxima (Rimu)	cmalsiB307
Lsi03G009700	Cucurbita maxima (Rimu)	cmalsiB483
Lsi03G009700	Cucurbita maxima (Rimu)	cmalsiB657
Lsi03G009700	Cucurbita moschata (Rifu)	cmolsiB108
Lsi03G009700	Cucurbita moschata (Rifu)	cmolsiB294
Lsi03G009700	Cucurbita moschata (Rifu)	cmolsiB467
Lsi03G009700	Cucurbita moschata (Rifu)	cmolsiB646
Lsi03G009700	Cucurbita pepo (Zucchini)	cpelsiB168
Lsi03G009700	Cucurbita pepo (Zucchini)	cpelsiB207
Lsi03G009700	Cucurbita pepo (Zucchini)	cpelsiB340
Lsi03G009700	Cucurbita pepo (Zucchini)	cpelsiB548
Lsi03G009700	Wild cucumber (PI 183967)	cpilsiB534
Lsi03G009700	Cucumber (Chinese Long) v2	culsiB520
Lsi03G009700	Melon (DHL92) v3.5.1	lsimeB253
Lsi03G009700	Watermelon (Charleston Gray)	lsiwcgB219
Lsi03G009700	Watermelon (97103) v1	lsiwmB240