CSPI04G11870 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G11870
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Hydroxyproline-rich glycoprotein family protein, putative
Location	Chr4 : 10119882 .. 10120433 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCATCCCAAATCACAAAAACTACAAGCTTCATAAAATCAAAACAATGGTGTCTCCCAAGTACTTCATGACCCTAACTTTCATGGCTACTTTGGTGTTTTCAGCCATCGACAGCAGCCGAGCAGCTCGTCGTCTCCTACAAACTGCTCCACCAAACATGCCAGGGTTGCCCTCATTGCCCAAACCGATGGGAATGCCACCTCTACCTCCTTTGCCGATGGGACCAGGAATGCCTTCTATTCCAAATCTCCCACAACCAACATTCCCTACCATTCAACCATCTCTCCCTAAGTTACCTCCACTTCCAAGTCTCCCCGTTAACATCCCGGCCACGGGAGTGGTGTTTCCTCCGCTACCAACTCTACCTTCCATCCCGACGACCTTCCCGTCGATCCCTTTTCTCACTCCGCCCCCAGCCACCACTTCTTCACCTTGAAGGAATCCGCTAGTTCCTTTGTTCTTGTTCACTTATTCATTGATCAGAGTGTTTGATTTTGTTTGATATCATCGTGATCCTATCATCCTATCCTCTTTATGTTATTTGTGTAATTA

mRNA sequence

ATGGTGTCTCCCAAGTACTTCATGACCCTAACTTTCATGGCTACTTTGGTGTTTTCAGCCATCGACAGCAGCCGAGCAGCTCGTCGTCTCCTACAAACTGCTCCACCAAACATGCCAGGGTTGCCCTCATTGCCCAAACCGATGGGAATGCCACCTCTACCTCCTTTGCCGATGGGACCAGGAATGCCTTCTATTCCAAATCTCCCACAACCAACATTCCCTACCATTCAACCATCTCTCCCTAAGTTACCTCCACTTCCAAGTCTCCCCGTTAACATCCCGGCCACGGGAGTGGTGTTTCCTCCGCTACCAACTCTACCTTCCATCCCGACGACCTTCCCGTCGATCCCTTTTCTCACTCCGCCCCCAGCCACCACTTCTTCACCTTGA

Coding sequence (CDS)

ATGGTGTCTCCCAAGTACTTCATGACCCTAACTTTCATGGCTACTTTGGTGTTTTCAGCCATCGACAGCAGCCGAGCAGCTCGTCGTCTCCTACAAACTGCTCCACCAAACATGCCAGGGTTGCCCTCATTGCCCAAACCGATGGGAATGCCACCTCTACCTCCTTTGCCGATGGGACCAGGAATGCCTTCTATTCCAAATCTCCCACAACCAACATTCCCTACCATTCAACCATCTCTCCCTAAGTTACCTCCACTTCCAAGTCTCCCCGTTAACATCCCGGCCACGGGAGTGGTGTTTCCTCCGCTACCAACTCTACCTTCCATCCCGACGACCTTCCCGTCGATCCCTTTTCTCACTCCGCCCCCAGCCACCACTTCTTCACCTTGA

Homology

[Close]

BLAST of CSPI04G11870 vs. TrEMBL
Match: A0A0A0KWI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 9.1e-59
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 1


Query: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKPMGMPPLPPLPMGP 60
           MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPK MGMPPLPPLPMGP
Sbjct: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60

Query: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120
           GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT
Sbjct: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120

Query: 121 PPPATTSSP 130
           PPPATTSSP
Sbjct: 121 PPPATTSSP 129

[Close]

BLAST of CSPI04G11870 vs. TrEMBL
Match: A0A0A0KZV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 9.8e-21
Identity = 73/127 (57.48%), Postives = 89/127 (70.08%), Query Frame = 1


Query: 10  LTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKPMGMPPLPPLPMGPGMPSIPNLP 69
           LTFM T VFS++D++R +R LLQT   N+P +PSLPKP  +PPLPP+P GP +PSIPN P
Sbjct: 9   LTFMVTCVFSSVDAARTSRHLLQTIL-NLPPMPSLPKPSALPPLPPMPTGPSIPSIPNFP 68

Query: 70  QPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPT--------LPSIPTTFP-SIPFLT 128
           QP+ P +      LPPLPSLP+NIP T V  PPLPT        L SI TT P S+PF +
Sbjct: 69  QPSLPKL-----TLPPLPSLPMNIP-TKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFFS 128

[Close]

BLAST of CSPI04G11870 vs. TrEMBL
Match: B9S9H3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0885310 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.6e-15
Identity = 70/129 (54.26%), Postives = 81/129 (62.79%), Query Frame = 1


Query: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKPMGMPPLPPLPMGP 60
           M S K F+   F+  L FSAID   AAR LLQ  P  +P +P+LPKP     LPPLP   
Sbjct: 1   MASFKNFL-FVFVIALAFSAIDVGLAARNLLQMPP--LPSVPNLPKPA----LPPLP--- 60

Query: 61  GMPSIPNLPQPTFPTI---QPSLPK--LPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPS 120
              +IP LPQPT PT+   Q SLPK  LPPLPSLP          PPLP++PSIPTT PS
Sbjct: 61  ---TIPTLPQPTLPTMPTTQSSLPKPTLPPLPSLPTMPTLPKATLPPLPSMPSIPTTIPS 116

Query: 121 IPFLTPPPA 125
           IPFL+PPP+
Sbjct: 121 IPFLSPPPS 116

[Close]

BLAST of CSPI04G11870 vs. TrEMBL
Match: U5G7A3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03440g PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.6e-15
Identity = 72/134 (53.73%), Postives = 83/134 (61.94%), Query Frame = 1


Query: 5   KYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKPMGMPPLPPLPMGPGMPS 64
           KYF  L     L FS+++ S AAR LLQ                 +PPLP +PM P +PS
Sbjct: 5   KYFFILALFIALTFSSMNVSIAARHLLQ-----------------LPPLPKIPMPP-LPS 64

Query: 65  IPNLPQPTFPTI---QPSLPK--LPPLPSLPVNIP----ATGVVFPPLPTLPSIPT--TF 124
           IPNLPQPT PT+   QPSLPK  LPPLPS+P  IP       V  PPLP++PSIPT  T 
Sbjct: 65  IPNLPQPTLPTLPTTQPSLPKPTLPPLPSIP-TIPTFPTVPKVTLPPLPSMPSIPTIPTI 119

Query: 125 PSIPFLTPPPATTS 128
           PSIPFL+PPPATTS
Sbjct: 125 PSIPFLSPPPATTS 119

[Close]

BLAST of CSPI04G11870 vs. TrEMBL
Match: A0A067LA35_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24978 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.2e-15
Identity = 66/124 (53.23%), Postives = 79/124 (63.71%), Query Frame = 1


Query: 5   KYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKPMGMPPLPPLPMGPGMPS 64
           K  + +     L FS++D   AARRLLQ  P  +P +P+LPKP     LPP      MP+
Sbjct: 5   KCSILVALFIALSFSSMDVGLAARRLLQLPP--LPSMPNLPKPA----LPP------MPT 64

Query: 65  IPNLPQPTFPTI---QPSLPK--LPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFL 124
           IP+LPQPT PT+   QPSLPK  LPPLPSLP       +  PPLP+LPSIP T PSIPFL
Sbjct: 65  IPSLPQPTLPTLPTTQPSLPKPTLPPLPSLPTIPAVPKLTLPPLPSLPSIPATIPSIPFL 116

[Close]

BLAST of CSPI04G11870 vs. TAIR10
Match: AT5G15780.1 (AT5G15780.1 Pollen Ole e 1 allergen and extensin family protein)

HSP 1 Score: 48.5 bits (114), Expect = 3.6e-06
Identity = 43/107 (40.19%), Postives = 56/107 (52.34%), Query Frame = 1


Query: 36  PNMPGLPSLPKPMGMPPLPPLPMGPGMPSIPNLPQPTFPTIQ--PSLPKLPPL------- 95
           P +P  P +P P  +PP+P +P  P +P+IP LP P  PT+   P++P LPPL       
Sbjct: 284 PTLPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTPTLPPIPTIPTLPPLPVLPPVP 343

Query: 96  ----PSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLTPPPATTSSP 130
               PSLP   P+  V  PP+P LP IP   P IP + P P     P
Sbjct: 344 IVNPPSLPPPPPSFPVPLPPVPGLPGIPPV-PLIPGIPPAPLIPGIP 389

[Close]

BLAST of CSPI04G11870 vs. NCBI nr
Match: gi|778697598|ref|XP_011654355.1| (PREDICTED: RNA-binding protein 12 [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 1.3e-58
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 1


Query: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKPMGMPPLPPLPMGP 60
           MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPK MGMPPLPPLPMGP
Sbjct: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60

Query: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120
           GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT
Sbjct: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120

Query: 121 PPPATTSSP 130
           PPPATTSSP
Sbjct: 121 PPPATTSSP 129

[Close]

BLAST of CSPI04G11870 vs. NCBI nr
Match: gi|659108950|ref|XP_008454469.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X2 [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 2.1e-40
Identity = 97/114 (85.09%), Postives = 102/114 (89.47%), Query Frame = 1


Query: 20  AIDSSRAARRLLQTAPPNMPGLPSLPKPMGMPPLPPLPMGPGMPSIPNLPQPTFPTIQPS 79
           +ID+SRAAR LLQTAPPNMPGLPSLPKP+G+PPLPPLPMGPG  SIPN PQPTFPTIQPS
Sbjct: 31  SIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGPGTSSIPNFPQPTFPTIQPS 90

Query: 80  LPKLPPLPSLPVNIPATGVVFPP----LPTLPSIPTTFPSIPFLTPPPATTSSP 130
           LPKLPPLPSLP+NIP TG V PP    LPTLPSIPTTFPSIPFLTPPPAT SSP
Sbjct: 91  LPKLPPLPSLPLNIPTTGAVLPPLTNSLPTLPSIPTTFPSIPFLTPPPATHSSP 144

[Close]

BLAST of CSPI04G11870 vs. NCBI nr
Match: gi|659108948|ref|XP_008454468.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X1 [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 2.1e-40
Identity = 97/114 (85.09%), Postives = 102/114 (89.47%), Query Frame = 1


Query: 20  AIDSSRAARRLLQTAPPNMPGLPSLPKPMGMPPLPPLPMGPGMPSIPNLPQPTFPTIQPS 79
           +ID+SRAAR LLQTAPPNMPGLPSLPKP+G+PPLPPLPMGPG  SIPN PQPTFPTIQPS
Sbjct: 61  SIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGPGTSSIPNFPQPTFPTIQPS 120

Query: 80  LPKLPPLPSLPVNIPATGVVFPP----LPTLPSIPTTFPSIPFLTPPPATTSSP 130
           LPKLPPLPSLP+NIP TG V PP    LPTLPSIPTTFPSIPFLTPPPAT SSP
Sbjct: 121 LPKLPPLPSLPLNIPTTGAVLPPLTNSLPTLPSIPTTFPSIPFLTPPPATHSSP 174

[Close]

BLAST of CSPI04G11870 vs. NCBI nr
Match: gi|700198739|gb|KGN53897.1| (hypothetical protein Csa_4G182280 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 73/127 (57.48%), Postives = 89/127 (70.08%), Query Frame = 1


Query: 10  LTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKPMGMPPLPPLPMGPGMPSIPNLP 69
           LTFM T VFS++D++R +R LLQT   N+P +PSLPKP  +PPLPP+P GP +PSIPN P
Sbjct: 9   LTFMVTCVFSSVDAARTSRHLLQTIL-NLPPMPSLPKPSALPPLPPMPTGPSIPSIPNFP 68

Query: 70  QPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPT--------LPSIPTTFP-SIPFLT 128
           QP+ P +      LPPLPSLP+NIP T V  PPLPT        L SI TT P S+PF +
Sbjct: 69  QPSLPKL-----TLPPLPSLPMNIP-TKVPLPPLPTTSLPNLPFLSSISTTLPSSLPFFS 128

[Close]

BLAST of CSPI04G11870 vs. NCBI nr
Match: gi|659125859|ref|XP_008462893.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 7.2e-17
Identity = 66/129 (51.16%), Postives = 86/129 (66.67%), Query Frame = 1


Query: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKPMGMPPLPPLPMGP 60
           M S K F+ + FMATL  S+I+  +AAR LLQT PP +P LP++P   G+PP P LP   
Sbjct: 1   MASSK-FLIIAFMATLALSSINFGQAARHLLQTTPPLVPNLPAIPT--GIPPFPALPN-- 60

Query: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120
             P++PNLPQPT P +      LPPLP+     P   +  P  P++P+IPT+FPSIPFL+
Sbjct: 61  --PTLPNLPQPTIPKVN-----LPPLPNGLALPPLPTMALPNFPSIPTIPTSFPSIPFLS 117

Query: 121 PPPATTSSP 130
           PPPAT+SSP
Sbjct: 121 PPPATSSSP 117

The following BLAST results are available for this feature:

BLAST of CSPI04G11870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G11870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWI7_CUCSA	9.1e-59	99.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1	[more]
A0A0A0KZV3_CUCSA	9.8e-21	57.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1	[more]
B9S9H3_RICCO	3.6e-15	54.26	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0885310 PE=4 SV=1	[more]
U5G7A3_POPTR	3.6e-15	53.73	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s03440g PE=4 SV=1	[more]
A0A067LA35_JATCU	6.2e-15	53.23	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24978 PE=4 SV=1	[more]

BLAST of CSPI04G11870 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15780.1	3.6e-06	40.19	Pollen Ole e 1 allergen and extensin family protein	[more]

BLAST of CSPI04G11870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697598\|ref\|XP_011654355.1\|	1.3e-58	99.22	PREDICTED: RNA-binding protein 12 [Cucumis sativus]	[more]
gi\|659108950\|ref\|XP_008454469.1\|	2.1e-40	85.09	PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X2 [Cucumis m...	[more]
gi\|659108948\|ref\|XP_008454468.1\|	2.1e-40	85.09	PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X1 [Cucumis m...	[more]
gi\|700198739\|gb\|KGN53897.1\|	1.4e-20	57.48	hypothetical protein Csa_4G182280 [Cucumis sativus]	[more]
gi\|659125859\|ref\|XP_008462893.1\|	7.2e-17	51.16	PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G11870.1	CSPI04G11870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33088	FAMILY NOT NAMED	coord: 1..129 score: 9.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G11870	Cla006499	Watermelon (97103) v1	cpiwmB298
CSPI04G11870	Csa4G182290	Cucumber (Chinese Long) v2	cpicuB184
CSPI04G11870	MELO3C018057	Melon (DHL92) v3.5.1	cpimeB296
CSPI04G11870	ClCG10G009590	Watermelon (Charleston Gray)	cpiwcgB286
CSPI04G11870	MELO3C018057.2	Melon (DHL92) v3.6.1	cpimedB290
CSPI04G11870	CsaV3_4G014800	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G11870	Cla97C10G192660	Watermelon (97103) v2	cpiwmbB284
CSPI04G11870	Bhi11G000864	Wax gourd	cpiwgoB361
CSPI04G11870	Cucsa.331820	Cucumber (Gy14) v1	cgycpiB495
CSPI04G11870	CmaCh16G002720	Cucurbita maxima (Rimu)	cmacpiB343
CSPI04G11870	CmoCh16G002920	Cucurbita moschata (Rifu)	cmocpiB334
CSPI04G11870	Cp4.1LG14g04950	Cucurbita pepo (Zucchini)	cpecpiB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None