Cla97C10G192660 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G192660
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	RNA-binding protein 12-like
Location	Cla97Chr10 : 20497772 .. 20498167 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTTCCAAGTACTTGATGATCCTAACTTTCACGGCTACTTTGGTGTTCTCAACCATCGACACTAGTCGAGCAGCTCGTCATCTCCTGCAAACCGCCCCGCCGAACATGCCAGGGTTGCCTTCATTGCCTAAACCGACTGCACTGCCTCCTCTACCGCCTTTGCCGACGGTACCAAACATGCCCTCTATTCCAAATCTCCCACAACCAACATTGCCTACTTCTCTCCCTAAGTTACCTCCACTTCCAAGTTTCCCCGGTAACATCCCAGTCACCGGAGTGACGCTCCCTCCGCTCCCGACAACTTCACTTCCGACTCTACCTTCCATCCCAACAACTTTCCCGTCCATCCCTTTCCTCACTCCGCCCCCGGCCACCACCTCTTCACCTTGA

mRNA sequence

ATGGCCTCTTCCAAGTACTTGATGATCCTAACTTTCACGGCTACTTTGGTGTTCTCAACCATCGACACTAGTCGAGCAGCTCGTCATCTCCTGCAAACCGCCCCGCCGAACATGCCAGGGTTGCCTTCATTGCCTAAACCGACTGCACTGCCTCCTCTACCGCCTTTGCCGACGGTACCAAACATGCCCTCTATTCCAAATCTCCCACAACCAACATTGCCTACTTCTCTCCCTAAGTTACCTCCACTTCCAAGTTTCCCCGGTAACATCCCAGTCACCGGAGTGACGCTCCCTCCGCTCCCGACAACTTCACTTCCGACTCTACCTTCCATCCCAACAACTTTCCCGTCCATCCCTTTCCTCACTCCGCCCCCGGCCACCACCTCTTCACCTTGA

Coding sequence (CDS)

ATGGCCTCTTCCAAGTACTTGATGATCCTAACTTTCACGGCTACTTTGGTGTTCTCAACCATCGACACTAGTCGAGCAGCTCGTCATCTCCTGCAAACCGCCCCGCCGAACATGCCAGGGTTGCCTTCATTGCCTAAACCGACTGCACTGCCTCCTCTACCGCCTTTGCCGACGGTACCAAACATGCCCTCTATTCCAAATCTCCCACAACCAACATTGCCTACTTCTCTCCCTAAGTTACCTCCACTTCCAAGTTTCCCCGGTAACATCCCAGTCACCGGAGTGACGCTCCCTCCGCTCCCGACAACTTCACTTCCGACTCTACCTTCCATCCCAACAACTTTCCCGTCCATCCCTTTCCTCACTCCGCCCCCGGCCACCACCTCTTCACCTTGA

Protein sequence

MASSKYLMILTFTATLVFSTIDTSRAARHLLQTAPPNMPGLPSLPKPTALPPLPPLPTVPNMPSIPNLPQPTLPTSLPKLPPLPSFPGNIPVTGVTLPPLPTTSLPTLPSIPTTFPSIPFLTPPPATTSSP

Homology

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BLAST of Cla97C10G192660 vs. NCBI nr
Match: XP_023518060.1 (proline-rich receptor-like protein kinase PERK2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-04
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1  MASSKYLMILTFTATLVFSTIDTSRAARHLLQTAPPN 38
          MAS KYL I+ F ATLVFS IDT RAARHLLQTAPPN
Sbjct: 1  MASFKYL-IIAFVATLVFSAIDTGRAARHLLQTAPPN 36

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BLAST of Cla97C10G192660 vs. NCBI nr
Match: XP_023518061.1 (protein PELPK1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1  MASSKYLMILTFTATLVFSTIDTSRAARHLLQTAPPN 38
          MASSKYL I+ F  TL+FS IDT RAARHLLQTAPPN
Sbjct: 1  MASSKYL-IIAFMVTLMFSAIDTGRAARHLLQTAPPN 36

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BLAST of Cla97C10G192660 vs. NCBI nr
Match: XP_011654355.1 (PREDICTED: RNA-binding protein 12 [Cucumis sativus] >KGN53898.1 hypothetical protein Csa_4G182290 [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 6.2e-04
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1  MASSKYLMILTFTATLVFSTIDTSRAARHLLQTAPP 37
          M S KY M LTF ATLVFS ID+SRAAR LLQTAPP
Sbjct: 1  MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPP 36

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BLAST of Cla97C10G192660 vs. TrEMBL
Match: tr|A0A0A0KWI7|A0A0A0KWI7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182290 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1  MASSKYLMILTFTATLVFSTIDTSRAARHLLQTAPP 37
          M S KY M LTF ATLVFS ID+SRAAR LLQTAPP
Sbjct: 1  MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPP 36

The following BLAST results are available for this feature:

BLAST of Cla97C10G192660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518060.1	2.1e-04	81.08	proline-rich receptor-like protein kinase PERK2 [Cucurbita pepo subsp. pepo]	[more]
XP_023518061.1	3.6e-04	78.38	protein PELPK1-like [Cucurbita pepo subsp. pepo]	[more]
XP_011654355.1	6.2e-04	77.78	PREDICTED: RNA-binding protein 12 [Cucumis sativus] >KGN53898.1 hypothetical pro...	[more]

BLAST of Cla97C10G192660 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KWI7\|A0A0A0KWI7_CUCSA	4.1e-04	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182290 PE=4 SV=1	[more]

BLAST of Cla97C10G192660 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C10G192660 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0004471	malate dehydrogenase (decarboxylating) (NAD+) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G192660.1	Cla97C10G192660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..85
None	No IPR available	PANTHER	PTHR33088:SF5	SUBFAMILY NOT NAMED	coord: 1..126
None	No IPR available	PANTHER	PTHR33088	FAMILY NOT NAMED	coord: 1..126

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G192660	Cla006499	Watermelon (97103) v1	wmwmbB051
Cla97C10G192660	Csa4G182290	Cucumber (Chinese Long) v2	cuwmbB277
Cla97C10G192660	MELO3C018057	Melon (DHL92) v3.5.1	mewmbB463
Cla97C10G192660	ClCG10G009590	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G192660	CSPI04G11870	Wild cucumber (PI 183967)	cpiwmbB284
Cla97C10G192660	Cucsa.331820	Cucumber (Gy14) v1	cgywmbB572
Cla97C10G192660	MELO3C018057.2	Melon (DHL92) v3.6.1	medwmbB456
Cla97C10G192660	CsaV3_4G014800	Cucumber (Chinese Long) v3	cucwmbB279
Cla97C10G192660	Bhi11G000864	Wax gourd	wgowmbB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G192660	Watermelon (97103) v2	wmbwmbB060
Cla97C10G192660	Silver-seed gourd	carwmbB0302
Cla97C10G192660	Silver-seed gourd	carwmbB0294
Cla97C10G192660	Silver-seed gourd	carwmbB0391
Cla97C10G192660	Cucumber (Gy14) v2	cgybwmbB491
Cla97C10G192660	Cucumber (Gy14) v1	cgywmbB393
Cla97C10G192660	Cucurbita maxima (Rimu)	cmawmbB332
Cla97C10G192660	Cucurbita maxima (Rimu)	cmawmbB524
Cla97C10G192660	Cucurbita maxima (Rimu)	cmawmbB713
Cla97C10G192660	Cucurbita moschata (Rifu)	cmowmbB316
Cla97C10G192660	Cucurbita moschata (Rifu)	cmowmbB505
Cla97C10G192660	Cucurbita moschata (Rifu)	cmowmbB684
Cla97C10G192660	Wild cucumber (PI 183967)	cpiwmbB542
Cla97C10G192660	Cucumber (Chinese Long) v3	cucwmbB537
Cla97C10G192660	Cucumber (Chinese Long) v2	cuwmbB518
Cla97C10G192660	Bottle gourd (USVL1VR-Ls)	lsiwmbB218
Cla97C10G192660	Melon (DHL92) v3.6.1	medwmbB160
Cla97C10G192660	Melon (DHL92) v3.5.1	mewmbB174
Cla97C10G192660	Watermelon (Charleston Gray)	wcgwmbB007