CmoCh16G002920 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G002920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr16 : 1332174 .. 1332539 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTCTTCCAACTACTTCATCATGGCTTTCATGGCTACTTTGGTGTTTTCAGCCATCGACACCGGCCGAGCCGCTCGTCGTCTCCTTCAAACCGCTCAGCCGAGCGTGCCAGGGTTGCCCTCGTTGCCGCCTCTACCGCCCTTCCCGACGGTACCGGGAATGCCCTCTATTCCTAATCTCCCACAGCCTACGTTGCCAACTACTCAACCTTCTCTCCCTAAGATGCCTCCTCTTCCTAGCTTCCCCGGTAGCATCCCGACCGGAGTGACATTGCCTCCACTCCCGACTCTACCGTCCTTCCCAATGACTTTCCCGTCGATCCCTTTCCTCACACCGCCCCCGGCCGCTACCTCTTCACCTTGA

mRNA sequence

ATGCCCTCTTCCAACTACTTCATCATGGCTTTCATGGCTACTTTGGTGTTTTCAGCCATCGACACCGGCCGAGCCGCTCGTCGTCTCCTTCAAACCGCTCAGCCGAGCGTGCCAGGGTTGCCCTCGTTGCCGCCTCTACCGCCCTTCCCGACGGTACCGGGAATGCCCTCTATTCCTAATCTCCCACAGCCTACGTTGCCAACTACTCAACCTTCTCTCCCTAAGATGCCTCCTCTTCCTAGCTTCCCCGGTAGCATCCCGACCGGAGTGACATTGCCTCCACTCCCGACTCTACCGTCCTTCCCAATGACTTTCCCGTCGATCCCTTTCCTCACACCGCCCCCGGCCGCTACCTCTTCACCTTGA

Coding sequence (CDS)

ATGCCCTCTTCCAACTACTTCATCATGGCTTTCATGGCTACTTTGGTGTTTTCAGCCATCGACACCGGCCGAGCCGCTCGTCGTCTCCTTCAAACCGCTCAGCCGAGCGTGCCAGGGTTGCCCTCGTTGCCGCCTCTACCGCCCTTCCCGACGGTACCGGGAATGCCCTCTATTCCTAATCTCCCACAGCCTACGTTGCCAACTACTCAACCTTCTCTCCCTAAGATGCCTCCTCTTCCTAGCTTCCCCGGTAGCATCCCGACCGGAGTGACATTGCCTCCACTCCCGACTCTACCGTCCTTCCCAATGACTTTCCCGTCGATCCCTTTCCTCACACCGCCCCCGGCCGCTACCTCTTCACCTTGA

Homology

[Close]

BLAST of CmoCh16G002920 vs. TrEMBL
Match: A0A0A0KWI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.0e-37
Identity = 96/129 (74.42%), Postives = 103/129 (79.84%), Query Frame = 1


Query: 1   MPSSNYFI-MAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLP------PLPPFPTVP 60
           M S  YF+ + FMATLVFSAID+ RAARRLLQTA P++PGLPSLP      PLPP P  P
Sbjct: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60

Query: 61  GMPSIPNLPQPTLPTTQPSLPKMPPLPSFPGSIP-TGVTLPPLPTLPSFPMTFPSIPFLT 120
           GMPSIPNLPQPT PT QPSLPK+PPLPS P +IP TGV  PPLPTLPS P TFPSIPFLT
Sbjct: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120

Query: 121 PPPAATSSP 122
           PPPA TSSP
Sbjct: 121 PPPATTSSP 129

[Close]

BLAST of CmoCh16G002920 vs. TrEMBL
Match: A0A0A0KZV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.2e-18
Identity = 72/135 (53.33%), Postives = 85/135 (62.96%), Query Frame = 1


Query: 1   MPSSNYFIMAFMATLVFSAIDTGRAARRLLQTA-----QPSVPGLPSLPPLPPFPTVPGM 60
           M S N FI+ FM T VFS++D  R +R LLQT       PS+P   +LPPLPP PT P +
Sbjct: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMPTGPSI 60

Query: 61  PSIPNLPQPTLPTTQPSLPKMPPLPSFPGSIPTGVTLPPLPT--LPSFPM------TFP- 120
           PSIPN PQP+LP        +PPLPS P +IPT V LPPLPT  LP+ P       T P 
Sbjct: 61  PSIPNFPQPSLPKL-----TLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLPS 120

Query: 121 SIPFLTPPPAATSSP 122
           S+PF +PPP ATSSP
Sbjct: 121 SLPFFSPPP-ATSSP 129

[Close]

BLAST of CmoCh16G002920 vs. TrEMBL
Match: A0A061E279_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007394 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.4e-18
Identity = 72/133 (54.14%), Postives = 85/133 (63.91%), Query Frame = 1


Query: 1   MPSSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPPLPPFPTVPG-----M 60
           M S N FI+AF   L FS+I+ G+AAR LLQ           LPPLPP PT+PG     +
Sbjct: 1   MASFNCFILAFFMALSFSSINVGQAARHLLQ-----------LPPLPPMPTLPGATLPPL 60

Query: 61  PSIPNLPQ---PTLPTTQPSLPK---MPPLPSFPGSIPTGVTLPPLPTL---PSFPMTFP 120
           PSIPNLPQ   PTLPTT PSLPK   +PPLP+ P +    V LPPLP+L   P+ P T P
Sbjct: 61  PSIPNLPQPTIPTLPTTLPSLPKPGTLPPLPTIPTA--PKVALPPLPSLPLVPTIPTTIP 120

[Close]

BLAST of CmoCh16G002920 vs. TrEMBL
Match: A0A061GNQ9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038432 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 73/135 (54.07%), Postives = 87/135 (64.44%), Query Frame = 1


Query: 1   MPSSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPPLPPFP--TVPGMPSI 60
           M S N F++AF     FS+I+ G AAR LLQ        +P LPP+P  P  T+P +PSI
Sbjct: 1   MASFNCFVLAFFMAFSFSSINVGLAARYLLQ--------MPPLPPMPTLPRATLPPLPSI 60

Query: 61  PNLPQP---TLPTTQPSLPK---MPPLPSFPGSIPT-----GVTLPPLPTLPS---FPMT 120
           PNLPQP   TLPTTQPSLPK   +PPLPS P ++PT      +TLPPLP +PS    P T
Sbjct: 61  PNLPQPTTPTLPTTQPSLPKPGTLPPLPSMP-TLPTIPNTPKITLPPLPNMPSIPTIPTT 120

[Close]

BLAST of CmoCh16G002920 vs. TrEMBL
Match: B9S9H3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0885310 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.7e-17
Identity = 70/123 (56.91%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 1   MPSSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPPLPPFPTVPGMPSIPN 60
           M S   F+  F+  L FSAID G AAR LLQ     +P LPS+P LP  P +P +P+IP 
Sbjct: 1   MASFKNFLFVFVIALAFSAIDVGLAARNLLQ-----MPPLPSVPNLPK-PALPPLPTIPT 60

Query: 61  LPQPTLPT---TQPSLPK--MPPLPSFPGSIPT--GVTLPPLPTLPSFPMTFPSIPFLTP 117
           LPQPTLPT   TQ SLPK  +PPLPS P ++PT    TLPPLP++PS P T PSIPFL+P
Sbjct: 61  LPQPTLPTMPTTQSSLPKPTLPPLPSLP-TMPTLPKATLPPLPSMPSIPTTIPSIPFLSP 116

[Close]

BLAST of CmoCh16G002920 vs. TAIR10
Match: AT4G38080.1 (AT4G38080.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-07
Identity = 51/126 (40.48%), Postives = 74/126 (58.73%), Query Frame = 1


Query: 2   PSSNYFIMAFMATLVFSAIDTGRAARR-LLQTAQPSVPGLPSLPPLPPFPTVPGMPSIPN 61
           P  N F+ + +  L F++  T  +A R LLQ+   + P   + PPLP   T+P +PS+P 
Sbjct: 3   PLKNSFVTSLVIALTFTSFFTSLSAHRHLLQSTPVTQPPALTFPPLPK-TTMPPVPSLPT 62

Query: 62  LPQPTLPTTQPSLPK---MPPLPSFP-GSIPTGV--TLPPLPTL---PSFPMTFP-SIPF 117
             Q TLP  QP+LP+   +PP+PS    S+P  V  T+P +P +    +FP  FP +IPF
Sbjct: 63  PGQQTLPQPQPTLPQPTGLPPMPSTQIPSLPNQVQPTIPNIPQINFPSNFPFNFPFNIPF 122

[Close]

BLAST of CmoCh16G002920 vs. TAIR10
Match: AT5G15780.1 (AT5G15780.1 Pollen Ole e 1 allergen and extensin family protein)

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-06
Identity = 39/87 (44.83%), Postives = 48/87 (55.17%), Query Frame = 1


Query: 35  PSVPGLPSLPPLPPFPTVPGMPSIPNLPQPTLPTTQPSLPKMPPLPSFPGSIPTGVTLPP 94
           P +P  PSLPP+P  PT P +P+IP LP P  PT       +PP+P+ P       TLPP
Sbjct: 290 PLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTPT-------LPPIPTIP-------TLPP 349

Query: 95  LPTLPSFPMTFPSIPFLTPPPAATSSP 122
           LP LP  P+  P  P L PPP +   P
Sbjct: 350 LPVLPPVPIVNP--PSLPPPPPSFPVP 360

[Close]

BLAST of CmoCh16G002920 vs. NCBI nr
Match: gi|778697598|ref|XP_011654355.1| (PREDICTED: RNA-binding protein 12 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-36
Identity = 96/129 (74.42%), Postives = 103/129 (79.84%), Query Frame = 1


Query: 1   MPSSNYFI-MAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLP------PLPPFPTVP 60
           M S  YF+ + FMATLVFSAID+ RAARRLLQTA P++PGLPSLP      PLPP P  P
Sbjct: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60

Query: 61  GMPSIPNLPQPTLPTTQPSLPKMPPLPSFPGSIP-TGVTLPPLPTLPSFPMTFPSIPFLT 120
           GMPSIPNLPQPT PT QPSLPK+PPLPS P +IP TGV  PPLPTLPS P TFPSIPFLT
Sbjct: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120

Query: 121 PPPAATSSP 122
           PPPA TSSP
Sbjct: 121 PPPATTSSP 129

[Close]

BLAST of CmoCh16G002920 vs. NCBI nr
Match: gi|659108948|ref|XP_008454468.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X1 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 6.1e-26
Identity = 79/114 (69.30%), Postives = 84/114 (73.68%), Query Frame = 1


Query: 19  AIDTGRAARRLLQTAQPSVPGLPSLP------PLPPFPTVPGMPSIPNLPQPTLPTTQPS 78
           +IDT RAAR LLQTA P++PGLPSLP      PLPP P  PG  SIPN PQPT PT QPS
Sbjct: 61  SIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGPGTSSIPNFPQPTFPTIQPS 120

Query: 79  LPKMPPLPSFPGSIP-TGVTLPP----LPTLPSFPMTFPSIPFLTPPPAATSSP 122
           LPK+PPLPS P +IP TG  LPP    LPTLPS P TFPSIPFLTPPPA  SSP
Sbjct: 121 LPKLPPLPSLPLNIPTTGAVLPPLTNSLPTLPSIPTTFPSIPFLTPPPATHSSP 174

[Close]

BLAST of CmoCh16G002920 vs. NCBI nr
Match: gi|659108950|ref|XP_008454469.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X2 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 6.1e-26
Identity = 79/114 (69.30%), Postives = 84/114 (73.68%), Query Frame = 1


Query: 19  AIDTGRAARRLLQTAQPSVPGLPSLP------PLPPFPTVPGMPSIPNLPQPTLPTTQPS 78
           +IDT RAAR LLQTA P++PGLPSLP      PLPP P  PG  SIPN PQPT PT QPS
Sbjct: 31  SIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGPGTSSIPNFPQPTFPTIQPS 90

Query: 79  LPKMPPLPSFPGSIP-TGVTLPP----LPTLPSFPMTFPSIPFLTPPPAATSSP 122
           LPK+PPLPS P +IP TG  LPP    LPTLPS P TFPSIPFLTPPPA  SSP
Sbjct: 91  LPKLPPLPSLPLNIPTTGAVLPPLTNSLPTLPSIPTTFPSIPFLTPPPATHSSP 144

[Close]

BLAST of CmoCh16G002920 vs. NCBI nr
Match: gi|659125859|ref|XP_008462893.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 2.1e-18
Identity = 66/126 (52.38%), Postives = 87/126 (69.05%), Query Frame = 1


Query: 1   MPSSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLPP-LPPFPTVPGMPSIP 60
           M SS + I+AFMATL  S+I+ G+AAR LLQT  P VP LP++P  +PPFP +P  P++P
Sbjct: 1   MASSKFLIIAFMATLALSSINFGQAARHLLQTTPPLVPNLPAIPTGIPPFPALPN-PTLP 60

Query: 61  NLPQPTLPTTQ-PSLPK---MPPLPSFPGSIPTGVTLPPLPTLPSFPMTFPSIPFLTPPP 120
           NLPQPT+P    P LP    +PPLP+        + LP  P++P+ P +FPSIPFL+PPP
Sbjct: 61  NLPQPTIPKVNLPPLPNGLALPPLPT--------MALPNFPSIPTIPTSFPSIPFLSPPP 117

Query: 121 AATSSP 122
           A +SSP
Sbjct: 121 ATSSSP 117

[Close]

BLAST of CmoCh16G002920 vs. NCBI nr
Match: gi|731384399|ref|XP_010648125.1| (PREDICTED: RNA-binding protein 12-like [Vitis vinifera])

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-17
Identity = 78/156 (50.00%), Postives = 92/156 (58.97%), Query Frame = 1


Query: 1   MPSSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLP--------SLPPLP----- 60
           M S N +I++    L FS+ID   AARRLL TA PSVP  P        +LPPLP     
Sbjct: 1   MASCNCYILSLFVLLSFSSIDVSLAARRLLDTAPPSVPTTPVIPTLPKPTLPPLPSSLPT 60

Query: 61  ----------PFPTVPGMPSIPNLPQPT---LPTTQPSLPK--MPPLPSFP--GSIPTGV 120
                     P PT+P +PS+P +PQPT   LPTTQPSLPK  +PPL S P   SIP  +
Sbjct: 61  LPTLPSLPTLPNPTLPPLPSLPTMPQPTLPSLPTTQPSLPKATLPPLSSIPTMPSIP-NL 120

The following BLAST results are available for this feature:

BLAST of CmoCh16G002920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G002920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWI7_CUCSA	7.0e-37	74.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1	[more]
A0A0A0KZV3_CUCSA	7.2e-18	53.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1	[more]
A0A061E279_THECC	9.4e-18	54.14	Uncharacterized protein OS=Theobroma cacao GN=TCM_007394 PE=4 SV=1	[more]
A0A061GNQ9_THECC	1.2e-17	54.07	Uncharacterized protein OS=Theobroma cacao GN=TCM_038432 PE=4 SV=1	[more]
B9S9H3_RICCO	4.7e-17	56.91	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0885310 PE=4 SV=1	[more]

BLAST of CmoCh16G002920 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38080.1	1.8e-07	40.48	hydroxyproline-rich glycoprotein family protein	[more]
AT5G15780.1	3.3e-06	44.83	Pollen Ole e 1 allergen and extensin family protein	[more]

BLAST of CmoCh16G002920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697598\|ref\|XP_011654355.1\|	1.0e-36	74.42	PREDICTED: RNA-binding protein 12 [Cucumis sativus]	[more]
gi\|659108948\|ref\|XP_008454468.1\|	6.1e-26	69.30	PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X1 [Cucumis m...	[more]
gi\|659108950\|ref\|XP_008454469.1\|	6.1e-26	69.30	PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X2 [Cucumis m...	[more]
gi\|659125859\|ref\|XP_008462893.1\|	2.1e-18	52.38	PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo]	[more]
gi\|731384399\|ref\|XP_010648125.1\|	1.0e-17	50.00	PREDICTED: RNA-binding protein 12-like [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G002920.1	CmoCh16G002920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33088	FAMILY NOT NAMED	coord: 1..121 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G002920	Cucsa.331820	Cucumber (Gy14) v1	cgycmoB0908
CmoCh16G002920	CmaCh16G002720	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G002920	Csa4G182290	Cucumber (Chinese Long) v2	cmocuB327
CmoCh16G002920	CSPI04G11870	Wild cucumber (PI 183967)	cmocpiB334
CmoCh16G002920	Cp4.1LG14g04950	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G002920	CsaV3_4G014800	Cucumber (Chinese Long) v3	cmocucB0390

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G002920	Wax gourd	cmowgoB0405
CmoCh16G002920	Cucurbita moschata (Rifu)	cmocmoB096
CmoCh16G002920	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh16G002920	Cucurbita maxima (Rimu)	cmacmoB133
CmoCh16G002920	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G002920	Watermelon (Charleston Gray)	cmowcgB273
CmoCh16G002920	Watermelon (97103) v1	cmowmB287
CmoCh16G002920	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G002920	Cucurbita pepo (Zucchini)	cmocpeB321
CmoCh16G002920	Bottle gourd (USVL1VR-Ls)	cmolsiB294
CmoCh16G002920	Melon (DHL92) v3.6.1	cmomedB317
CmoCh16G002920	Melon (DHL92) v3.6.1	cmomedB339
CmoCh16G002920	Melon (DHL92) v3.6.1	cmomedB342
CmoCh16G002920	Silver-seed gourd	carcmoB0402
CmoCh16G002920	Silver-seed gourd	carcmoB0509
CmoCh16G002920	Watermelon (97103) v2	cmowmbB316