Csa4G166930 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G166930
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ozone-responsive stress related protein; contains IPR009515 (Protein of unknown function DUF1138)
Location	Chr4 : 8632505 .. 8632879 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCAAATACATAGTAGGTTCTTTACTTGGAGCATGTGGAGTTGCATATATTTGTGACCATCTTATTTCTGACAAGAAAATATTTGGAGGTAACTATCGGCCTGGTCTCACAGTTTCTTTGATCTGCTACCGTTGCTTGGCTTTGCCATTTCTTTGTTGTACCTCCATTTCTCTAATTTCTTAATGTCTCTTTCTTTTCAATGGATTTCTTTCTTGTTCAGGAACAACTCCAAGTACTGTTTCAAACAGCGAGTGGTTGGAAGAAACTGACAAAAAATTCCAAGCATGGCCTCGTACAGCCGGTCCACCTGTAGTCATGAACCCCATCAGTCGCCAAAATTTCATCGTCAAAACCCGCCCTGAATCTTAA

mRNA sequence

ATGGCAGCCAAATACATAGTAGGTTCTTTACTTGGAGCATGTGGAGTTGCATATATTTGTGACCATCTTATTTCTGACAAGAAAATATTTGGAGGAACAACTCCAAGTACTGTTTCAAACAGCGAGTGGTTGGAAGAAACTGACAAAAAATTCCAAGCATGGCCTCGTACAGCCGGTCCACCTGTAGTCATGAACCCCATCAGTCGCCAAAATTTCATCGTCAAAACCCGCCCTGAATCTTAA

Coding sequence (CDS)

ATGGCAGCCAAATACATAGTAGGTTCTTTACTTGGAGCATGTGGAGTTGCATATATTTGTGACCATCTTATTTCTGACAAGAAAATATTTGGAGGAACAACTCCAAGTACTGTTTCAAACAGCGAGTGGTTGGAAGAAACTGACAAAAAATTCCAAGCATGGCCTCGTACAGCCGGTCCACCTGTAGTCATGAACCCCATCAGTCGCCAAAATTTCATCGTCAAAACCCGCCCTGAATCTTAA

Protein sequence

MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPES*

Homology

[Close]

BLAST of Csa4G166930 vs. TrEMBL
Match: A0A0A0KYC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166930 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.8e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60
          MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPES 81
          PVVMNPISRQNFIVKTRPES
Sbjct: 61 PVVMNPISRQNFIVKTRPES 80

[Close]

BLAST of Csa4G166930 vs. TrEMBL
Match: A0A061EWV8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024708 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-29
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 1


Query: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60
          MA KYI+ ++LG+  +AY+CD LI+DKKIFGGTTPSTVSN EW EETDKKFQAWPRTAGP
Sbjct: 1  MATKYIIPAVLGSFAIAYVCDQLIADKKIFGGTTPSTVSNKEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPES 81
          PVVMNPISRQNFIVK   ES
Sbjct: 61 PVVMNPISRQNFIVKAGSES 80

[Close]

BLAST of Csa4G166930 vs. TrEMBL
Match: A0A0J8CLY4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g072890 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-29
Identity = 61/76 (80.26%), Postives = 70/76 (92.11%), Query Frame = 1


Query: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60
          MA KYIVGSL+G+  +AY CD+++SD+KIFGGTTPSTVSN EW EETDKKFQAWPRTAGP
Sbjct: 1  MAGKYIVGSLIGSFVIAYACDNIMSDQKIFGGTTPSTVSNKEWFEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKT 77
          PVVMNPISRQNFI+K+
Sbjct: 61 PVVMNPISRQNFIIKS 76

[Close]

BLAST of Csa4G166930 vs. TrEMBL
Match: C6SVD6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G1218001 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.6e-29
Identity = 58/79 (73.42%), Postives = 72/79 (91.14%), Query Frame = 1


Query: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60
          M+ KYIV ++LG+ GVA++CD+ +S+KK+FGGTTP T++N+EW EETDKK QAWPRTAGP
Sbjct: 1  MSGKYIVSAILGSFGVAWVCDYYVSEKKLFGGTTPGTITNNEWAEETDKKLQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPE 80
          PVVMNPISRQNFIVK+RPE
Sbjct: 61 PVVMNPISRQNFIVKSRPE 79

[Close]

BLAST of Csa4G166930 vs. TrEMBL
Match: A0A0B2RS23_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_011150 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.6e-29
Identity = 58/79 (73.42%), Postives = 72/79 (91.14%), Query Frame = 1


Query: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60
          M+ KYIV ++LG+ GVA++CD+ +S+KK+FGGTTP T++N+EW EETDKK QAWPRTAGP
Sbjct: 1  MSGKYIVSAILGSFGVAWVCDYYVSEKKLFGGTTPGTITNNEWAEETDKKLQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPE 80
          PVVMNPISRQNFIVK+RPE
Sbjct: 61 PVVMNPISRQNFIVKSRPE 79

[Close]

BLAST of Csa4G166930 vs. TAIR10
Match: AT1G01170.1 (AT1G01170.1 Protein of unknown function (DUF1138))

HSP 1 Score: 131.7 bits (330), Expect = 2.0e-31
Identity = 60/77 (77.92%), Postives = 66/77 (85.71%), Query Frame = 1


Query: 3  AKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGPPV 62
          AKYI+G+L+G+ G++YI D +ISD KIFGGTTP TVSN EW   TD+KFQAWPRTAGPPV
Sbjct: 7  AKYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPV 66

Query: 63 VMNPISRQNFIVKTRPE 80
          VMNPISRQNFIVKTRPE
Sbjct: 67 VMNPISRQNFIVKTRPE 83

[Close]

BLAST of Csa4G166930 vs. TAIR10
Match: AT4G00860.1 (AT4G00860.1 Protein of unknown function (DUF1138))

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-27
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 1


Query: 3  AKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGPPV 62
          A YI+G+L G+  VAY+CD +ISD K+FGGTTP T++N EW   T+++ QAWPR AGPPV
Sbjct: 4  ATYIIGALAGSAVVAYVCDKVISDDKLFGGTTPGTITNKEWGAATEERLQAWPRVAGPPV 63

Query: 63 VMNPISRQNFIVKTRPE 80
          VMNPISRQNFIVK+RPE
Sbjct: 64 VMNPISRQNFIVKSRPE 80

[Close]

BLAST of Csa4G166930 vs. NCBI nr
Match: gi|449463344|ref|XP_004149394.1| (PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 5.5e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60
          MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPES 81
          PVVMNPISRQNFIVKTRPES
Sbjct: 61 PVVMNPISRQNFIVKTRPES 80

[Close]

BLAST of Csa4G166930 vs. NCBI nr
Match: gi|659134221|ref|XP_008467091.1| (PREDICTED: uncharacterized protein LOC103504527 [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-32
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 1


Query: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60
          MAAKYIVGSLLGA  VAYI DHLISDKKIFGGTTPSTVSNSEW EETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVGSLLGATAVAYIGDHLISDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTR 78
          PVVMNPISRQNFIVK+R
Sbjct: 61 PVVMNPISRQNFIVKSR 77

[Close]

BLAST of Csa4G166930 vs. NCBI nr
Match: gi|590636108|ref|XP_007028779.1| (Uncharacterized protein TCM_024708 [Theobroma cacao])

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-29
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 1


Query: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60
          MA KYI+ ++LG+  +AY+CD LI+DKKIFGGTTPSTVSN EW EETDKKFQAWPRTAGP
Sbjct: 1  MATKYIIPAVLGSFAIAYVCDQLIADKKIFGGTTPSTVSNKEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPES 81
          PVVMNPISRQNFIVK   ES
Sbjct: 61 PVVMNPISRQNFIVKAGSES 80

[Close]

BLAST of Csa4G166930 vs. NCBI nr
Match: gi|731325729|ref|XP_010673660.1| (PREDICTED: uncharacterized protein LOC104890007 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 135.6 bits (340), Expect = 3.9e-29
Identity = 61/76 (80.26%), Postives = 70/76 (92.11%), Query Frame = 1


Query: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60
          MA KYIVGSL+G+  +AY CD+++SD+KIFGGTTPSTVSN EW EETDKKFQAWPRTAGP
Sbjct: 1  MAGKYIVGSLIGSFVIAYACDNIMSDQKIFGGTTPSTVSNKEWFEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKT 77
          PVVMNPISRQNFI+K+
Sbjct: 61 PVVMNPISRQNFIIKS 76

[Close]

BLAST of Csa4G166930 vs. NCBI nr
Match: gi|356571835|ref|XP_003554077.1| (PREDICTED: uncharacterized protein LOC100305508 [Glycine max])

HSP 1 Score: 135.2 bits (339), Expect = 5.1e-29
Identity = 58/79 (73.42%), Postives = 72/79 (91.14%), Query Frame = 1


Query: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60
          M+ KYIV ++LG+ GVA++CD+ +S+KK+FGGTTP T++N+EW EETDKK QAWPRTAGP
Sbjct: 1  MSGKYIVSAILGSFGVAWVCDYYVSEKKLFGGTTPGTITNNEWAEETDKKLQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPE 80
          PVVMNPISRQNFIVK+RPE
Sbjct: 61 PVVMNPISRQNFIVKSRPE 79

The following BLAST results are available for this feature:

BLAST of Csa4G166930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYC7_CUCSA	3.8e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166930 PE=4 SV=1	[more]
A0A061EWV8_THECC	1.2e-29	78.75	Uncharacterized protein OS=Theobroma cacao GN=TCM_024708 PE=4 SV=1	[more]
A0A0J8CLY4_BETVU	2.7e-29	80.26	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g072890 PE=4 S...	[more]
C6SVD6_SOYBN	3.6e-29	73.42	Uncharacterized protein OS=Glycine max GN=GLYMA_19G1218001 PE=2 SV=1	[more]
A0A0B2RS23_GLYSO	3.6e-29	73.42	Uncharacterized protein OS=Glycine soja GN=glysoja_011150 PE=4 SV=1	[more]

BLAST of Csa4G166930 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01170.1	2.0e-31	77.92	Protein of unknown function (DUF1138)	[more]
AT4G00860.1	1.3e-27	67.53	Protein of unknown function (DUF1138)	[more]

BLAST of Csa4G166930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463344\|ref\|XP_004149394.1\|	5.5e-39	100.00	PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus]	[more]
gi\|659134221\|ref\|XP_008467091.1\|	1.0e-32	93.51	PREDICTED: uncharacterized protein LOC103504527 [Cucumis melo]	[more]
gi\|590636108\|ref\|XP_007028779.1\|	1.8e-29	78.75	Uncharacterized protein TCM_024708 [Theobroma cacao]	[more]
gi\|731325729\|ref\|XP_010673660.1\|	3.9e-29	80.26	PREDICTED: uncharacterized protein LOC104890007 [Beta vulgaris subsp. vulgaris]	[more]
gi\|356571835\|ref\|XP_003554077.1\|	5.1e-29	73.42	PREDICTED: uncharacterized protein LOC100305508 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009515	DUF1138

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU090163	cucumber EST collection version 3.0	transcribed_cluster
CU102145	cucumber EST collection version 3.0	transcribed_cluster
CU104067	cucumber EST collection version 3.0	transcribed_cluster
CU106995	cucumber EST collection version 3.0	transcribed_cluster
CU113002	cucumber EST collection version 3.0	transcribed_cluster
CU177585	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G166930.1	Csa4G166930.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU106995	CU106995	transcribed_cluster
CU102145	CU102145	transcribed_cluster
CU090163	CU090163	transcribed_cluster
CU113002	CU113002	transcribed_cluster
CU104067	CU104067	transcribed_cluster
CU177585	CU177585	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009515	Protein of unknown function DUF1138	PFAM	PF06592	DUF1138	coord: 3..75 score: 7.6
None	No IPR available	PANTHER	PTHR34267	FAMILY NOT NAMED	coord: 2..79 score: 3.1
None	No IPR available	PANTHER	PTHR34267:SF1	AT0ZI1 PROTEIN	coord: 2..79 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G166930	Cla002775	Watermelon (97103) v1	cuwmB335
Csa4G166930	ClCG04G000060	Watermelon (Charleston Gray)	cuwcgB305
Csa4G166930	Lsi01G018560	Bottle gourd (USVL1VR-Ls)	culsiB260
Csa4G166930	Cla97C04G068490	Watermelon (97103) v2	cuwmbB302
Csa4G166930	Bhi03G001939	Wax gourd	cuwgoB411
Csa4G166930	CSPI04G10640	Wild cucumber (PI 183967)	cpicuB182
Csa4G166930	CmaCh03G000690	Cucurbita maxima (Rimu)	cmacuB666
Csa4G166930	CmaCh07G013220	Cucurbita maxima (Rimu)	cmacuB868
Csa4G166930	CmoCh07G013660	Cucurbita moschata (Rifu)	cmocuB857
Csa4G166930	CmoCh03G000660	Cucurbita moschata (Rifu)	cmocuB654
Csa4G166930	Cp4.1LG10g11620	Cucurbita pepo (Zucchini)	cpecuB080
Csa4G166930	Cp4.1LG19g00620	Cucurbita pepo (Zucchini)	cpecuB489
Csa4G166930	CsGy4G010280	Cucumber (Gy14) v2	cgybcuB165
Csa4G166930	Carg22455	Silver-seed gourd	carcuB0213
Csa4G166930	Carg12746	Silver-seed gourd	carcuB0313

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G166930	Cucurbita maxima (Rimu)	cmacuB673
Csa4G166930	Cucurbita moschata (Rifu)	cmocuB662
Csa4G166930	Melon (DHL92) v3.5.1	cumeB331
Csa4G166930	Cucurbita pepo (Zucchini)	cpecuB074
Csa4G166930	Melon (DHL92) v3.6.1	cumedB313
Csa4G166930	Wax gourd	cuwgoB392
Csa4G166930	Cucumber (Gy14) v1	cgycuB246