Carg12746 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12746
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ozone-responsive stress related protein
Location	Cucurbita_argyrosperma_scaffold_021 : 1141085 .. 1143780 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACACGCGTCTTTCTTAACACGCGAAGTTTCTCCCTGCTCTTCCAATTTGCCTCTTTCTCTCTCGTCTTCCTCACCGCCGCCCGCAGCCCTTCTCCCGTCGACGTCGGTCCCTTTTCTGGCGACATCAAATCAGGTACTCATGAAGAATAGTCCGGGAGGAATTTTCGGATCTGATTTTTCTTTTCGCAATCCCCCTCGCCTACCCTCTCTTTTCTCTTCCTTGTGTACTATATCTTCTAATTTTCTTTTTTGTGTTTGTTTGTTTTTTTATTTTCTTCGATCCATTTTTGTTCTGTTATGAGCTTTAGATTTTCTGTATGGCAAGGTGAAGAAAAGAGACCCCTTTTTGTGGATCTATTCATGTTTTCTTGTTCTATTTTCAAATTATTTGTATGATTTTTTTTTTTTTTTAATACAAGTATCTGGATTTTTTTCACCTATCTTTGATGACGATTCTGAAACAACCGTCTTCAATTTCATTCGAAAGAGAAATAGAAGTTACTAAGAGGTTCTTAGTAATCCCCAATCTCAGGCTATATGTATTTGATTCTTAGCTGTTGGGATTTATTCTGATTCAACTCAATCTTCCGGGTATTGTTTGCTACTTTTCTACATTGGCAAACTTATATTCAGATTATTTGTTCCTTCTTTCTTCCTGTTTGTGATCTTTTGTGGATTTTCCCTTTTGATTATTAGGGAGGAGAGATATGAAGAGATTATTTCTTCCTTCTTTCTTCCTGTTTGTGATCTTATGTGGATTTTCCCTTTTGATTATTAGGGAGGAGAGATATGAAGGTGAACCACAGATTTTTTAGTGCTTCTAAATTGAAAACAGATGGTTGAGACTGATATTAATCTTTCACAAAAGAGAGAAGATAAAGAGTATTGGTTGGGTATGTGTATCATGTCATTTGAATTAAGAAGGTAGTTGGGTTTGGAATGATGTCTTAGAATAAAAATCTTTTGAGTGGCTTTAGGGTTTTTATTGGGATTTGATAATTTTGGATGAGAAAGAAGAGAGTAGATGGAAGCAGACACTCAGAAGTCTCTGCAATTAGGGAGTTCATTTCCTTGCCATGTTTGTGTTGTGGGTTTCCTCTGTGGAGTTTGTATTGCTTCTCTGTTTCTTGGTGCTTTTACTTTATTTGGTGTCCCTTTGGAATTTGGTTGGAGTTTTTTCTCATCCAATTCAATGTATGCTTCACTTTGGAACTCAACTTCTGAAAATATTAGTAAAAGTTGTCATCATCATAGGAATATTAAGCTTCAGTCATACTATTTTTCATCCAGTTATTGTTTATGTTTCTGTTTCTTTTTTTCTAAACATAATTAGTTACGGTCATGCTACGAAAAAACCTCATTATGACTTTCTTTTGAAATCTAAGAAAAGAAAGAAATCAAAGAGTATTGTCGGAGGTGTACAAAGCTTTTCAATGATGTTGTTTACCGCGCTATATCTTGGTGTAAATTGTCTAATACTTTTGTTTCCTGGAGTCACACCTCCCTCGTAGTAAATTGGGGAGGTTCTTTCTGTAATTATCATGGACAACACATGCCGTTCGTAAATGAAATTGAGAAACAGGAAATTAGAAACAAAAATGTTCGTAGATGAAATCGAGAAGCAGGAAATTAGAAACCAAAATGTTATCTATTGGGGCCTTTACTTAACTTAATAAAGTAGATAGATGTAGCTGGTGGAGTTTGGTGCAGTTTGATCTAATCCTGTGTATAATATGGTTCATTTGACTTGGGAACGTATCGATCCATTGCAGTTAGACGATGGCATCGAAGTACGTTGCAGCTTCTTTAGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGTAATGATAGTTTCTTTGGACTGCGGCCATTGCTTGGCTTTCAGTTTCTTTGATGTGCTACCATTGCTCTGTTGTGTTGATTTAATTTGTTTTCAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAAATGTTACATTAGTTGTGAATCTATACACTTTTGATTGGATGGATCATTCTGGTTTGAAACTACTGCCTAGTCATTAAGCAGTTCTAATCTGCCTTGCCTTCATGTTTTGAGTTGGGAACTTGAAGCAATTCTTGTTGTTCTGATAGTCATTCTTATTTCCTCTTTAAAAGTTGCATCGTTAGTTTGTTATGATGATGATGATGTCATGATGTTGAATCTTAAATAATGCAGTGGAAAATTTCCCACCTCCTTCAGACAACGAGCAATCATCATCTTTCTTATTTACTTTGATTTATGAGATCCCCAAGTTCTTCATAGGTGTCTGGTTTGCTTGTTTATGATTTCTTTGCTTGATAGTCCAAACCCACTAACCCACTGTTAGTTGGTATTGTCGTTTTTGGGTTTTCCTCTAAGGTTTTTAATATTTCGGTTGACGGAGATTTCTTACACCCTTATAAAGAATGTGATTTGTTCTCCTCTCCAATTGACGTGGGATCTCACAACCCACCTTGTCATGTGGGACCTCTCAATTCACCCACCTTTGGGGTTTGATGTCCTTGTTGGCACACCACCTTGT

mRNA sequence

CACACGCGTCTTTCTTAACACGCGAAGTTTCTCCCTGCTCTTCCAATTTGCCTCTTTCTCTCTCGTCTTCCTCACCGCCGCCCGCAGCCCTTCTCCCGTCGACGTCGGTCCCTTTTCTGGCGACATCAAATCAGTTAGACGATGGCATCGAAGTACGTTGCAGCTTCTTTAGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAAATGTTACATTAGTTGTGAATCTATACACTTTTGATTGGATGGATCATTCTGGTTTGAAACTACTGCCTAGTCATTAAGCAGTTCTAATCTGCCTTGCCTTCATGTTTTGAGTTGGGAACTTGAAGCAATTCTTGTTGTTCTGATAGTCATTCTTATTTCCTCTTTAAAAGTTGCATCGTTAGTTTGTTATGATGATGATGATGTCATGATGTTGAATCTTAAATAATGCAGTGGAAAATTTCCCACCTCCTTCAGACAACGAGCAATCATCATCTTTCTTATTTACTTTGATTTATGAGATCCCCAAGTTCTTCATAGGTGTCTGGTTTGCTTGTTTATGATTTCTTTGCTTGATAGTCCAAACCCACTAACCCACTGTTAGTTGGTATTGTCGTTTTTGGGTTTTCCTCTAAGGTTTTTAATATTTCGGTTGACGGAGATTTCTTACACCCTTATAAAGAATGTGATTTGTTCTCCTCTCCAATTGACGTGGGATCTCACAACCCACCTTGTCATGTGGGACCTCTCAATTCACCCACCTTTGGGGTTTGATGTCCTTGTTGGCACACCACCTTGT

Coding sequence (CDS)

ATGGCATCGAAGTACGTTGCAGCTTCTTTAGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAA

Protein sequence

MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA

Homology

[Close]

BLAST of Carg12746 vs. NCBI nr
Match: XP_022925267.1 (uncharacterized protein LOC111432556 [Cucurbita moschata])

HSP 1 Score: 166.0 bits (419), Expect = 5.2e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTRPEA
Sbjct: 61 PVVMNPISRQNFIVKTRPEA 80

[Close]

BLAST of Carg12746 vs. NCBI nr
Match: XP_023517179.1 (uncharacterized protein LOC111781016 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.3 bits (412), Expect = 3.4e-37
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KYV ASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTRPEA
Sbjct: 61 PVVMNPISRQNFIVKTRPEA 80

[Close]

BLAST of Carg12746 vs. NCBI nr
Match: XP_022966506.1 (uncharacterized protein LOC111466138 [Cucurbita maxima])

HSP 1 Score: 161.8 bits (408), Expect = 9.8e-37
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTR EA
Sbjct: 61 PVVMNPISRQNFIVKTRSEA 80

[Close]

BLAST of Carg12746 vs. NCBI nr
Match: XP_022967931.1 (uncharacterized protein LOC111467297 [Cucurbita maxima] >XP_022967932.1 uncharacterized protein LOC111467297 [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 2.8e-31
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KY+  S +G FA AY++D LV+DKKIFGGTTPSTV NSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVVSTLGAFAFAYVSDILVADKKIFGGTTPSTVLNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTR EA
Sbjct: 61 PVVMNPISRQNFIVKTRSEA 80

[Close]

BLAST of Carg12746 vs. NCBI nr
Match: XP_004149394.1 (PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus] >XP_011653428.1 PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus] >XP_011653429.1 PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus] >KGN53849.1 hypothetical protein Csa_4G166930 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 3.6e-31
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KY+  SL+G   +AYI D+L+SDKKIFGGTTPSTVSNSEW EETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTRPE+
Sbjct: 61 PVVMNPISRQNFIVKTRPES 80

[Close]

BLAST of Carg12746 vs. TAIR10
Match: AT1G01170.1 (Protein of unknown function (DUF1138))

HSP 1 Score: 131.7 bits (330), Expect = 2.0e-31
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 3  SKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPV 62
          +KY+  +L+G+F I+YI D ++SD KIFGGTTP TVSN EWW  TD+KFQAWPRTAGPPV
Sbjct: 7  AKYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPV 66

Query: 63 VMNPISRQNFIVKTRPE 80
          VMNPISRQNFIVKTRPE
Sbjct: 67 VMNPISRQNFIVKTRPE 83

[Close]

BLAST of Carg12746 vs. TAIR10
Match: AT4G00860.1 (Protein of unknown function (DUF1138))

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-25
Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 5  YVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVM 64
          Y+  +L G+  +AY+ D ++SD K+FGGTTP T++N EW   T+++ QAWPR AGPPVVM
Sbjct: 6  YIIGALAGSAVVAYVCDKVISDDKLFGGTTPGTITNKEWGAATEERLQAWPRVAGPPVVM 65

Query: 65 NPISRQNFIVKTRPE 80
          NPISRQNFIVK+RPE
Sbjct: 66 NPISRQNFIVKSRPE 80

[Close]

BLAST of Carg12746 vs. TrEMBL
Match: tr|A0A0A0KYC7|A0A0A0KYC7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166930 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-31
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KY+  SL+G   +AYI D+L+SDKKIFGGTTPSTVSNSEW EETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTRPE+
Sbjct: 61 PVVMNPISRQNFIVKTRPES 80

[Close]

BLAST of Carg12746 vs. TrEMBL
Match: tr|A0A1S3CSQ7|A0A1S3CSQ7_CUCME (uncharacterized protein LOC103504527 OS=Cucumis melo OX=3656 GN=LOC103504527 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.1e-31
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KY+  SL+G  A+AYI D+L+SDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVGSLLGATAVAYIGDHLISDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTR 78
          PVVMNPISRQNFIVK+R
Sbjct: 61 PVVMNPISRQNFIVKSR 77

[Close]

BLAST of Carg12746 vs. TrEMBL
Match: tr|A0A1U8MZY5|A0A1U8MZY5_GOSHI (uncharacterized protein LOC107943169 OS=Gossypium hirsutum OX=3635 GN=LOC107943169 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KY+ ASL G+FAIAY++D LVSD KIFGGTTPSTVSN  WWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIIASLAGSFAIAYVSDLLVSDSKIFGGTTPSTVSNKGWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVK+  E+
Sbjct: 61 PVVMNPISRQNFIVKSGSES 80

[Close]

BLAST of Carg12746 vs. TrEMBL
Match: tr|A0A0D2NRU0|A0A0D2NRU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G230600 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KY+ ASL G+FAIAY++D LVSD KIFGGTTPSTVSN  WWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIIASLAGSFAIAYVSDLLVSDSKIFGGTTPSTVSNKGWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVK+  E+
Sbjct: 61 PVVMNPISRQNFIVKSGSES 80

[Close]

BLAST of Carg12746 vs. TrEMBL
Match: tr|A0A2P5W1F2|A0A2P5W1F2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA35798 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-30
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KY+ AS+ G+FAIAY++D LVSD KIFGGTTPSTVSN  WWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIIASVAGSFAIAYVSDLLVSDSKIFGGTTPSTVSNKRWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVK+  E+
Sbjct: 61 PVVMNPISRQNFIVKSGSES 80

The following BLAST results are available for this feature:

BLAST of Carg12746 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925267.1	5.2e-38	100.00	uncharacterized protein LOC111432556 [Cucurbita moschata]	[more]
XP_023517179.1	3.4e-37	97.50	uncharacterized protein LOC111781016 [Cucurbita pepo subsp. pepo]	[more]
XP_022966506.1	9.8e-37	97.50	uncharacterized protein LOC111466138 [Cucurbita maxima]	[more]
XP_022967931.1	2.8e-31	82.50	uncharacterized protein LOC111467297 [Cucurbita maxima] >XP_022967932.1 uncharac...	[more]
XP_004149394.1	3.6e-31	82.50	PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus] >XP_011653428....	[more]

BLAST of Carg12746 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01170.1	2.0e-31	75.32	Protein of unknown function (DUF1138)	[more]
AT4G00860.1	8.0e-25	61.33	Protein of unknown function (DUF1138)	[more]

BLAST of Carg12746 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12746 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KYC7\|A0A0A0KYC7_CUCSA	2.4e-31	82.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166930 PE=4 SV=1	[more]
tr\|A0A1S3CSQ7\|A0A1S3CSQ7_CUCME	3.1e-31	84.42	uncharacterized protein LOC103504527 OS=Cucumis melo OX=3656 GN=LOC103504527 PE=...	[more]
tr\|A0A1U8MZY5\|A0A1U8MZY5_GOSHI	2.0e-30	81.25	uncharacterized protein LOC107943169 OS=Gossypium hirsutum OX=3635 GN=LOC1079431...	[more]
tr\|A0A0D2NRU0\|A0A0D2NRU0_GOSRA	2.0e-30	81.25	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G230600 PE=4 ...	[more]
tr\|A0A2P5W1F2\|A0A2P5W1F2_GOSBA	2.6e-30	80.00	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA35798 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009515	DUF1138

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12746-RA	Carg12746-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009515	Protein of unknown function DUF1138	PFAM	PF06592	DUF1138	coord: 3..75 e-value: 6.4E-43 score: 144.6
IPR009515	Protein of unknown function DUF1138	PANTHER	PTHR34267	FAMILY NOT NAMED	coord: 1..78
None	No IPR available	PANTHER	PTHR34267:SF1	AT0ZI1 PROTEIN	coord: 1..78

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12746	Cla002775	Watermelon (97103) v1	carwmB0278
Carg12746	Csa4G166930	Cucumber (Chinese Long) v2	carcuB0313
Carg12746	CSPI04G10640	Wild cucumber (PI 183967)	carcpiB0318
Carg12746	CmaCh03G000690	Cucurbita maxima (Rimu)	carcmaB0397
Carg12746	CmaCh07G013220	Cucurbita maxima (Rimu)	carcmaB0398
Carg12746	CmoCh03G000660	Cucurbita moschata (Rifu)	carcmoB0394
Carg12746	Lsi01G018560	Bottle gourd (USVL1VR-Ls)	carlsiB256
Carg12746	Cp4.1LG19g00620	Cucurbita pepo (Zucchini)	carcpeB0400
Carg12746	Cp4.1LG10g11620	Cucurbita pepo (Zucchini)	carcpeB0398
Carg12746	CsGy4G010280	Cucumber (Gy14) v2	carcgybB0299
Carg12746	CsaV3_4G011760	Cucumber (Chinese Long) v3	carcucB0317
Carg12746	Bhi03G001939	Wax gourd	carwgoB0368

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12746	Carg22455	Silver-seed gourd	carcarB230

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12746	Watermelon (97103) v2	carwmbB0292
Carg12746	Wax gourd	carwgoB0371
Carg12746	Cucumber (Gy14) v1	carcgyB0332
Carg12746	Cucurbita moschata (Rifu)	carcmoB0395
Carg12746	Bottle gourd (USVL1VR-Ls)	carlsiB259
Carg12746	Bottle gourd (USVL1VR-Ls)	carlsiB260
Carg12746	Melon (DHL92) v3.5.1	carmeB0285
Carg12746	Melon (DHL92) v3.5.1	carmeB0288
Carg12746	Melon (DHL92) v3.6.1	carmedB0299
Carg12746	Watermelon (Charleston Gray)	carwcgB0276