Carg12746 (gene) Silver-seed gourd

NameCarg12746
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionOzone-responsive stress related protein
LocationCucurbita_argyrosperma_scaffold_021 : 1141085 .. 1143780 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACACGCGTCTTTCTTAACACGCGAAGTTTCTCCCTGCTCTTCCAATTTGCCTCTTTCTCTCTCGTCTTCCTCACCGCCGCCCGCAGCCCTTCTCCCGTCGACGTCGGTCCCTTTTCTGGCGACATCAAATCAGGTACTCATGAAGAATAGTCCGGGAGGAATTTTCGGATCTGATTTTTCTTTTCGCAATCCCCCTCGCCTACCCTCTCTTTTCTCTTCCTTGTGTACTATATCTTCTAATTTTCTTTTTTGTGTTTGTTTGTTTTTTTATTTTCTTCGATCCATTTTTGTTCTGTTATGAGCTTTAGATTTTCTGTATGGCAAGGTGAAGAAAAGAGACCCCTTTTTGTGGATCTATTCATGTTTTCTTGTTCTATTTTCAAATTATTTGTATGATTTTTTTTTTTTTTTAATACAAGTATCTGGATTTTTTTCACCTATCTTTGATGACGATTCTGAAACAACCGTCTTCAATTTCATTCGAAAGAGAAATAGAAGTTACTAAGAGGTTCTTAGTAATCCCCAATCTCAGGCTATATGTATTTGATTCTTAGCTGTTGGGATTTATTCTGATTCAACTCAATCTTCCGGGTATTGTTTGCTACTTTTCTACATTGGCAAACTTATATTCAGATTATTTGTTCCTTCTTTCTTCCTGTTTGTGATCTTTTGTGGATTTTCCCTTTTGATTATTAGGGAGGAGAGATATGAAGAGATTATTTCTTCCTTCTTTCTTCCTGTTTGTGATCTTATGTGGATTTTCCCTTTTGATTATTAGGGAGGAGAGATATGAAGGTGAACCACAGATTTTTTAGTGCTTCTAAATTGAAAACAGATGGTTGAGACTGATATTAATCTTTCACAAAAGAGAGAAGATAAAGAGTATTGGTTGGGTATGTGTATCATGTCATTTGAATTAAGAAGGTAGTTGGGTTTGGAATGATGTCTTAGAATAAAAATCTTTTGAGTGGCTTTAGGGTTTTTATTGGGATTTGATAATTTTGGATGAGAAAGAAGAGAGTAGATGGAAGCAGACACTCAGAAGTCTCTGCAATTAGGGAGTTCATTTCCTTGCCATGTTTGTGTTGTGGGTTTCCTCTGTGGAGTTTGTATTGCTTCTCTGTTTCTTGGTGCTTTTACTTTATTTGGTGTCCCTTTGGAATTTGGTTGGAGTTTTTTCTCATCCAATTCAATGTATGCTTCACTTTGGAACTCAACTTCTGAAAATATTAGTAAAAGTTGTCATCATCATAGGAATATTAAGCTTCAGTCATACTATTTTTCATCCAGTTATTGTTTATGTTTCTGTTTCTTTTTTTCTAAACATAATTAGTTACGGTCATGCTACGAAAAAACCTCATTATGACTTTCTTTTGAAATCTAAGAAAAGAAAGAAATCAAAGAGTATTGTCGGAGGTGTACAAAGCTTTTCAATGATGTTGTTTACCGCGCTATATCTTGGTGTAAATTGTCTAATACTTTTGTTTCCTGGAGTCACACCTCCCTCGTAGTAAATTGGGGAGGTTCTTTCTGTAATTATCATGGACAACACATGCCGTTCGTAAATGAAATTGAGAAACAGGAAATTAGAAACAAAAATGTTCGTAGATGAAATCGAGAAGCAGGAAATTAGAAACCAAAATGTTATCTATTGGGGCCTTTACTTAACTTAATAAAGTAGATAGATGTAGCTGGTGGAGTTTGGTGCAGTTTGATCTAATCCTGTGTATAATATGGTTCATTTGACTTGGGAACGTATCGATCCATTGCAGTTAGACGATGGCATCGAAGTACGTTGCAGCTTCTTTAGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGTAATGATAGTTTCTTTGGACTGCGGCCATTGCTTGGCTTTCAGTTTCTTTGATGTGCTACCATTGCTCTGTTGTGTTGATTTAATTTGTTTTCAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAAATGTTACATTAGTTGTGAATCTATACACTTTTGATTGGATGGATCATTCTGGTTTGAAACTACTGCCTAGTCATTAAGCAGTTCTAATCTGCCTTGCCTTCATGTTTTGAGTTGGGAACTTGAAGCAATTCTTGTTGTTCTGATAGTCATTCTTATTTCCTCTTTAAAAGTTGCATCGTTAGTTTGTTATGATGATGATGATGTCATGATGTTGAATCTTAAATAATGCAGTGGAAAATTTCCCACCTCCTTCAGACAACGAGCAATCATCATCTTTCTTATTTACTTTGATTTATGAGATCCCCAAGTTCTTCATAGGTGTCTGGTTTGCTTGTTTATGATTTCTTTGCTTGATAGTCCAAACCCACTAACCCACTGTTAGTTGGTATTGTCGTTTTTGGGTTTTCCTCTAAGGTTTTTAATATTTCGGTTGACGGAGATTTCTTACACCCTTATAAAGAATGTGATTTGTTCTCCTCTCCAATTGACGTGGGATCTCACAACCCACCTTGTCATGTGGGACCTCTCAATTCACCCACCTTTGGGGTTTGATGTCCTTGTTGGCACACCACCTTGT

mRNA sequence

CACACGCGTCTTTCTTAACACGCGAAGTTTCTCCCTGCTCTTCCAATTTGCCTCTTTCTCTCTCGTCTTCCTCACCGCCGCCCGCAGCCCTTCTCCCGTCGACGTCGGTCCCTTTTCTGGCGACATCAAATCAGTTAGACGATGGCATCGAAGTACGTTGCAGCTTCTTTAGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAAATGTTACATTAGTTGTGAATCTATACACTTTTGATTGGATGGATCATTCTGGTTTGAAACTACTGCCTAGTCATTAAGCAGTTCTAATCTGCCTTGCCTTCATGTTTTGAGTTGGGAACTTGAAGCAATTCTTGTTGTTCTGATAGTCATTCTTATTTCCTCTTTAAAAGTTGCATCGTTAGTTTGTTATGATGATGATGATGTCATGATGTTGAATCTTAAATAATGCAGTGGAAAATTTCCCACCTCCTTCAGACAACGAGCAATCATCATCTTTCTTATTTACTTTGATTTATGAGATCCCCAAGTTCTTCATAGGTGTCTGGTTTGCTTGTTTATGATTTCTTTGCTTGATAGTCCAAACCCACTAACCCACTGTTAGTTGGTATTGTCGTTTTTGGGTTTTCCTCTAAGGTTTTTAATATTTCGGTTGACGGAGATTTCTTACACCCTTATAAAGAATGTGATTTGTTCTCCTCTCCAATTGACGTGGGATCTCACAACCCACCTTGTCATGTGGGACCTCTCAATTCACCCACCTTTGGGGTTTGATGTCCTTGTTGGCACACCACCTTGT

Coding sequence (CDS)

ATGGCATCGAAGTACGTTGCAGCTTCTTTAGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAA

Protein sequence

MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA
BLAST of Carg12746 vs. NCBI nr
Match: XP_022925267.1 (uncharacterized protein LOC111432556 [Cucurbita moschata])

HSP 1 Score: 166.0 bits (419), Expect = 5.2e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0

Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTRPEA
Sbjct: 61 PVVMNPISRQNFIVKTRPEA 80

BLAST of Carg12746 vs. NCBI nr
Match: XP_023517179.1 (uncharacterized protein LOC111781016 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.3 bits (412), Expect = 3.4e-37
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0

Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KYV ASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTRPEA
Sbjct: 61 PVVMNPISRQNFIVKTRPEA 80

BLAST of Carg12746 vs. NCBI nr
Match: XP_022966506.1 (uncharacterized protein LOC111466138 [Cucurbita maxima])

HSP 1 Score: 161.8 bits (408), Expect = 9.8e-37
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0

Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTR EA
Sbjct: 61 PVVMNPISRQNFIVKTRSEA 80

BLAST of Carg12746 vs. NCBI nr
Match: XP_022967931.1 (uncharacterized protein LOC111467297 [Cucurbita maxima] >XP_022967932.1 uncharacterized protein LOC111467297 [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 2.8e-31
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 0

Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KY+  S +G FA AY++D LV+DKKIFGGTTPSTV NSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVVSTLGAFAFAYVSDILVADKKIFGGTTPSTVLNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTR EA
Sbjct: 61 PVVMNPISRQNFIVKTRSEA 80

BLAST of Carg12746 vs. NCBI nr
Match: XP_004149394.1 (PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus] >XP_011653428.1 PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus] >XP_011653429.1 PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus] >KGN53849.1 hypothetical protein Csa_4G166930 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 3.6e-31
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 0

Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KY+  SL+G   +AYI D+L+SDKKIFGGTTPSTVSNSEW EETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTRPE+
Sbjct: 61 PVVMNPISRQNFIVKTRPES 80

BLAST of Carg12746 vs. TAIR10
Match: AT1G01170.1 (Protein of unknown function (DUF1138))

HSP 1 Score: 131.7 bits (330), Expect = 2.0e-31
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 0

Query: 3  SKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPV 62
          +KY+  +L+G+F I+YI D ++SD KIFGGTTP TVSN EWW  TD+KFQAWPRTAGPPV
Sbjct: 7  AKYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPV 66

Query: 63 VMNPISRQNFIVKTRPE 80
          VMNPISRQNFIVKTRPE
Sbjct: 67 VMNPISRQNFIVKTRPE 83

BLAST of Carg12746 vs. TAIR10
Match: AT4G00860.1 (Protein of unknown function (DUF1138))

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-25
Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = 0

Query: 5  YVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVM 64
          Y+  +L G+  +AY+ D ++SD K+FGGTTP T++N EW   T+++ QAWPR AGPPVVM
Sbjct: 6  YIIGALAGSAVVAYVCDKVISDDKLFGGTTPGTITNKEWGAATEERLQAWPRVAGPPVVM 65

Query: 65 NPISRQNFIVKTRPE 80
          NPISRQNFIVK+RPE
Sbjct: 66 NPISRQNFIVKSRPE 80

BLAST of Carg12746 vs. TrEMBL
Match: tr|A0A0A0KYC7|A0A0A0KYC7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166930 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-31
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 0

Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KY+  SL+G   +AYI D+L+SDKKIFGGTTPSTVSNSEW EETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTRPE+
Sbjct: 61 PVVMNPISRQNFIVKTRPES 80

BLAST of Carg12746 vs. TrEMBL
Match: tr|A0A1S3CSQ7|A0A1S3CSQ7_CUCME (uncharacterized protein LOC103504527 OS=Cucumis melo OX=3656 GN=LOC103504527 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.1e-31
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 0

Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KY+  SL+G  A+AYI D+L+SDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVGSLLGATAVAYIGDHLISDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTR 78
          PVVMNPISRQNFIVK+R
Sbjct: 61 PVVMNPISRQNFIVKSR 77

BLAST of Carg12746 vs. TrEMBL
Match: tr|A0A1U8MZY5|A0A1U8MZY5_GOSHI (uncharacterized protein LOC107943169 OS=Gossypium hirsutum OX=3635 GN=LOC107943169 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 0

Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KY+ ASL G+FAIAY++D LVSD KIFGGTTPSTVSN  WWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIIASLAGSFAIAYVSDLLVSDSKIFGGTTPSTVSNKGWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVK+  E+
Sbjct: 61 PVVMNPISRQNFIVKSGSES 80

BLAST of Carg12746 vs. TrEMBL
Match: tr|A0A0D2NRU0|A0A0D2NRU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G230600 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 0

Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KY+ ASL G+FAIAY++D LVSD KIFGGTTPSTVSN  WWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIIASLAGSFAIAYVSDLLVSDSKIFGGTTPSTVSNKGWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVK+  E+
Sbjct: 61 PVVMNPISRQNFIVKSGSES 80

BLAST of Carg12746 vs. TrEMBL
Match: tr|A0A2P5W1F2|A0A2P5W1F2_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA35798 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-30
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 0

Query: 1  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA+KY+ AS+ G+FAIAY++D LVSD KIFGGTTPSTVSN  WWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIIASVAGSFAIAYVSDLLVSDSKIFGGTTPSTVSNKRWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVK+  E+
Sbjct: 61 PVVMNPISRQNFIVKSGSES 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022925267.15.2e-38100.00uncharacterized protein LOC111432556 [Cucurbita moschata][more]
XP_023517179.13.4e-3797.50uncharacterized protein LOC111781016 [Cucurbita pepo subsp. pepo][more]
XP_022966506.19.8e-3797.50uncharacterized protein LOC111466138 [Cucurbita maxima][more]
XP_022967931.12.8e-3182.50uncharacterized protein LOC111467297 [Cucurbita maxima] >XP_022967932.1 uncharac... [more]
XP_004149394.13.6e-3182.50PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus] >XP_011653428.... [more]
Match NameE-valueIdentityDescription
AT1G01170.12.0e-3175.32Protein of unknown function (DUF1138)[more]
AT4G00860.18.0e-2561.33Protein of unknown function (DUF1138)[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KYC7|A0A0A0KYC7_CUCSA2.4e-3182.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166930 PE=4 SV=1[more]
tr|A0A1S3CSQ7|A0A1S3CSQ7_CUCME3.1e-3184.42uncharacterized protein LOC103504527 OS=Cucumis melo OX=3656 GN=LOC103504527 PE=... [more]
tr|A0A1U8MZY5|A0A1U8MZY5_GOSHI2.0e-3081.25uncharacterized protein LOC107943169 OS=Gossypium hirsutum OX=3635 GN=LOC1079431... [more]
tr|A0A0D2NRU0|A0A0D2NRU0_GOSRA2.0e-3081.25Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G230600 PE=4 ... [more]
tr|A0A2P5W1F2|A0A2P5W1F2_GOSBA2.6e-3080.00Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA35798 PE=4 SV... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009515DUF1138
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12746-RACarg12746-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009515Protein of unknown function DUF1138PFAMPF06592DUF1138coord: 3..75
e-value: 6.4E-43
score: 144.6
IPR009515Protein of unknown function DUF1138PANTHERPTHR34267FAMILY NOT NAMEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR34267:SF1AT0ZI1 PROTEINcoord: 1..78