Lsi01G018560 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi01G018560
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionOzone-responsive stress related protein
Locationchr01 : 20235983 .. 20237576 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTATAGGAGTCCTCATGGTTTGCTTGAGATGGCTAATAAGGATTTGCAAGAAAAGGCACCAGATGGAATGTATCTGGTTAATGTTAAGGAACTACTAGGCAATGATATCCTTTCACTAAAAAAATCAGGCAATGATATGGTTAATTTGGATATATATTTCTAAAAGTTCGGACACACCGATGTATCTAGATGCAGGACAAACAAACACTTCAACTCAATTTTTTTTAAAAAAACATTTTTTAATTCGCGCCTTTTACAATGCTTACTGTTGAACCTGTTGCTAGGTAAAACCAAACACTGAAACTTCACCTGGCCCTAAAAAACTTATGAAAGGGAAAAAGAAACCACACTGCTGCTTGTTTCTCCCCTACGAGTTCATCTCACGATGTTAAATTTACATGTTTTTATGTACTTTAGAGTATTAAATGTCAATAGATGCATATTATATTTAAAAATTCATATCTTCAACTTGTTCGCGTCTTACTTTTCTGTTGTAGTTTGTGTTTGTGGTCCTCTTCCTCTTTGTGCACATGTCTGTCTGTGTTCAAGTCCACATTAGGATACTAGCTTTTGGTTCAATATGGGTGCAGTTTGATGTAATTGTGTGTATAGTAGGTCAATTGATTTGGGAACATATTAGTCCATTGCAGTTAGAAGATGGCAGCAAAATACATAGTAGGTTCTTTGCTTGGAGCAAGTGCAGTTGCGTATATTTCTGACCATCTTGTTGCTGACAAGAAAATATTTGGAGGTAATTACCAGTCATCATCATCATTTGGTTTTGCAGTTTCTTTGATATGCTACTTGCTACCCTTACTTTGCTTTACAGTTTCTTTGATGTGCTACCATTGCTCTATTGTCCTAATTTCTCATTCTTTTTAATGGATTTTGTTCAGGAACAACCCCAAGTACTGTTTCAAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAGGCATGGCCTCGTACCGCCGGTCCACCAGTGGTGATGAACCCCATCAGTCGCCAGAATTTCATCGTCAAAACCCACTCTGAAGCTTAAATATTACTTTGGTTGTCAAATTTTTACACTTTTGATTGGATCATTCTGCTTTTGGAAGTACATCCTAGTCTAGCAGTTCTAATCTGCCTTCACATTTTGAGTTGTGAACTTGAAGGATTTCTTGTTTGTTGTTCTGATGGCCATTCTTATTTCCTGTTTAAGTTGGCATCATTGGCTTGTTATGTTCAATGGTGACAGGATGTTGATTCTGAATAAATCAGTGAAAAAATAAAACTTCCCTTCATGTCTCTTTCAGACAATGTAAAATGATCATTCTTCTTATTTGCCTGATTTATAAGATCACCAAGCTCTCCATAGTTGTCTCATCTGCTTGTTTGTACAAGGACAATAACTTCTGGAAATTGTTTCCTTAGAATTGCTGCTCAAGTTGGTCTCTTTGGAGCTGTTTGGGGGTTTGTAATGGAATGAGTTTGAATTGTAATGTAGTTTAAAACCCATGTTTGGATTGAGCGTTTTGGATTTGATTTGTAATATTAAACTCGTTTTATTCCGATAATTTTTTATCAAACCCTCTTTCTTTTTC

mRNA sequence

ATGGCCTATAGGAGTCCTCATGGTTTGCTTGAGATGGCTAATAAGGATTTGCAAGAAAAGGCACCAGATGGAATGTATCTGGTTAATGTTAAGGAACTACTAGGCAATGATATCCTTTCACTAAAAAAATCAGGCAATGATATGAAGATGGCAGCAAAATACATAGTAGGTTCTTTGCTTGGAGCAAGTGCAGTTGCGTATATTTCTGACCATCTTGTTGCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCAAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAGGCATGGCCTCGTACCGCCGGTCCACCAGTGGTGATGAACCCCATCAGTCGCCAGAATTTCATCGTCAAAACCCACTCTGAAGCTTAAATATTACTTTGGTTGTCAAATTTTTACACTTTTGATTGGATCATTCTGCTTTTGGAAGTACATCCTAGTCTAGCAGTTCTAATCTGCCTTCACATTTTGAGTTGTGAACTTGAAGGATTTCTTGTTTGTTGTTCTGATGGCCATTCTTATTTCCTGTTTAAGTTGGCATCATTGGCTTGTTATGTTCAATGGTGACAGGATGTTGATTCTGAATAAATCAGTGAAAAAATAAAACTTCCCTTCATGTCTCTTTCAGACAATGTAAAATGATCATTCTTCTTATTTGCCTGATTTATAAGATCACCAAGCTCTCCATAGTTGTCTCATCTGCTTGTTTGTACAAGGACAATAACTTCTGGAAATTGTTTCCTTAGAATTGCTGCTCAAGTTGGTCTCTTTGGAGCTGTTTGGGGGTTTGTAATGGAATGAGTTTGAATTGTAATGTAGTTTAAAACCCATGTTTGGATTGAGCGTTTTGGATTTGATTTGTAATATTAAACTCGTTTTATTCCGATAATTTTTTATCAAACCCTCTTTCTTTTTC

Coding sequence (CDS)

ATGGCCTATAGGAGTCCTCATGGTTTGCTTGAGATGGCTAATAAGGATTTGCAAGAAAAGGCACCAGATGGAATGTATCTGGTTAATGTTAAGGAACTACTAGGCAATGATATCCTTTCACTAAAAAAATCAGGCAATGATATGAAGATGGCAGCAAAATACATAGTAGGTTCTTTGCTTGGAGCAAGTGCAGTTGCGTATATTTCTGACCATCTTGTTGCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCAAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAGGCATGGCCTCGTACCGCCGGTCCACCAGTGGTGATGAACCCCATCAGTCGCCAGAATTTCATCGTCAAAACCCACTCTGAAGCTTAA

Protein sequence

MAYRSPHGLLEMANKDLQEKAPDGMYLVNVKELLGNDILSLKKSGNDMKMAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTHSEA
BLAST of Lsi01G018560 vs. TrEMBL
Match: A0A0A0KYC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166930 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.8e-33
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 1

Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKYIVGSLLGA  VAYI DHL++DKKIFGGTTPSTVSNSEW EETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKTHSEA 130
           PVVMNPISRQNFIVKT  E+
Sbjct: 61  PVVMNPISRQNFIVKTRPES 80

BLAST of Lsi01G018560 vs. TrEMBL
Match: A0A061EWV8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024708 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.1e-31
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 1

Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MA KYI+ ++LG+ A+AY+ D L+ADKKIFGGTTPSTVSN EWWEETDKKFQAWPRTAGP
Sbjct: 1   MATKYIIPAVLGSFAIAYVCDQLIADKKIFGGTTPSTVSNKEWWEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKTHSEA 130
           PVVMNPISRQNFIVK  SE+
Sbjct: 61  PVVMNPISRQNFIVKAGSES 80

BLAST of Lsi01G018560 vs. TrEMBL
Match: A0A0D2NRU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G230600 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-30
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 1

Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKYI+ SL G+ A+AY+SD LV+D KIFGGTTPSTVSN  WWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIIASLAGSFAIAYVSDLLVSDSKIFGGTTPSTVSNKGWWEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKTHSEA 130
           PVVMNPISRQNFIVK+ SE+
Sbjct: 61  PVVMNPISRQNFIVKSGSES 80

BLAST of Lsi01G018560 vs. TrEMBL
Match: A0A0B0MGC6_GOSAR (Monopolar spindle 2 OS=Gossypium arboreum GN=F383_19537 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-30
Identity = 65/79 (82.28%), Postives = 72/79 (91.14%), Query Frame = 1

Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKYI+GS++ + AVAY+ D LVAD+KIFGGTTP TVSN EWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIIGSVVASFAVAYVIDKLVADEKIFGGTTPHTVSNKEWWEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKTHSE 129
           PVVMNPISRQNFIVK+ SE
Sbjct: 61  PVVMNPISRQNFIVKSGSE 79

BLAST of Lsi01G018560 vs. TrEMBL
Match: A0A059DI87_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02367 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.8e-30
Identity = 60/80 (75.00%), Postives = 72/80 (90.00%), Query Frame = 1

Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           M+A YI+ ++LG+ A+A+ +DH  ADKKIFGGTTPST++N EWWEETDKKFQAWPRTAGP
Sbjct: 1   MSATYIISAVLGSFAIAFAADHFFADKKIFGGTTPSTIANKEWWEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKTHSEA 130
           PVVMNPISRQNFIVK+ SE+
Sbjct: 61  PVVMNPISRQNFIVKSRSES 80

BLAST of Lsi01G018560 vs. TAIR10
Match: AT1G01170.1 (AT1G01170.1 Protein of unknown function (DUF1138))

HSP 1 Score: 128.6 bits (322), Expect = 2.7e-30
Identity = 56/77 (72.73%), Postives = 66/77 (85.71%), Query Frame = 1

Query: 52  AKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPV 111
           AKYI+G+L+G+  ++YI D +++D KIFGGTTP TVSN EWW  TD+KFQAWPRTAGPPV
Sbjct: 7   AKYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPV 66

Query: 112 VMNPISRQNFIVKTHSE 129
           VMNPISRQNFIVKT  E
Sbjct: 67  VMNPISRQNFIVKTRPE 83

BLAST of Lsi01G018560 vs. TAIR10
Match: AT4G00860.1 (AT4G00860.1 Protein of unknown function (DUF1138))

HSP 1 Score: 111.7 bits (278), Expect = 3.4e-25
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1

Query: 52  AKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPV 111
           A YI+G+L G++ VAY+ D +++D K+FGGTTP T++N EW   T+++ QAWPR AGPPV
Sbjct: 4   ATYIIGALAGSAVVAYVCDKVISDDKLFGGTTPGTITNKEWGAATEERLQAWPRVAGPPV 63

Query: 112 VMNPISRQNFIVKTHSE 129
           VMNPISRQNFIVK+  E
Sbjct: 64  VMNPISRQNFIVKSRPE 80

BLAST of Lsi01G018560 vs. NCBI nr
Match: gi|659134221|ref|XP_008467091.1| (PREDICTED: uncharacterized protein LOC103504527 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 3.8e-34
Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = 1

Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKYIVGSLLGA+AVAYI DHL++DKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIVGSLLGATAVAYIGDHLISDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKT 126
           PVVMNPISRQNFIVK+
Sbjct: 61  PVVMNPISRQNFIVKS 76

BLAST of Lsi01G018560 vs. NCBI nr
Match: gi|449463344|ref|XP_004149394.1| (PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 5.5e-33
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 1

Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKYIVGSLLGA  VAYI DHL++DKKIFGGTTPSTVSNSEW EETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKTHSEA 130
           PVVMNPISRQNFIVKT  E+
Sbjct: 61  PVVMNPISRQNFIVKTRPES 80

BLAST of Lsi01G018560 vs. NCBI nr
Match: gi|590636108|ref|XP_007028779.1| (Uncharacterized protein TCM_024708 [Theobroma cacao])

HSP 1 Score: 141.7 bits (356), Expect = 8.7e-31
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 1

Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MA KYI+ ++LG+ A+AY+ D L+ADKKIFGGTTPSTVSN EWWEETDKKFQAWPRTAGP
Sbjct: 1   MATKYIIPAVLGSFAIAYVCDQLIADKKIFGGTTPSTVSNKEWWEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKTHSEA 130
           PVVMNPISRQNFIVK  SE+
Sbjct: 61  PVVMNPISRQNFIVKAGSES 80

BLAST of Lsi01G018560 vs. NCBI nr
Match: gi|823136581|ref|XP_012468054.1| (PREDICTED: uncharacterized protein LOC105786244 [Gossypium raimondii])

HSP 1 Score: 140.2 bits (352), Expect = 2.5e-30
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 1

Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKYI+ SL G+ A+AY+SD LV+D KIFGGTTPSTVSN  WWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIIASLAGSFAIAYVSDLLVSDSKIFGGTTPSTVSNKGWWEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKTHSEA 130
           PVVMNPISRQNFIVK+ SE+
Sbjct: 61  PVVMNPISRQNFIVKSGSES 80

BLAST of Lsi01G018560 vs. NCBI nr
Match: gi|728810096|gb|KHF99441.1| (Monopolar spindle 2 [Gossypium arboreum])

HSP 1 Score: 140.2 bits (352), Expect = 2.5e-30
Identity = 65/79 (82.28%), Postives = 72/79 (91.14%), Query Frame = 1

Query: 50  MAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 109
           MAAKYI+GS++ + AVAY+ D LVAD+KIFGGTTP TVSN EWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIIGSVVASFAVAYVIDKLVADEKIFGGTTPHTVSNKEWWEETDKKFQAWPRTAGP 60

Query: 110 PVVMNPISRQNFIVKTHSE 129
           PVVMNPISRQNFIVK+ SE
Sbjct: 61  PVVMNPISRQNFIVKSGSE 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KYC7_CUCSA3.8e-3388.75Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166930 PE=4 SV=1[more]
A0A061EWV8_THECC6.1e-3180.00Uncharacterized protein OS=Theobroma cacao GN=TCM_024708 PE=4 SV=1[more]
A0A0D2NRU0_GOSRA1.8e-3081.25Uncharacterized protein OS=Gossypium raimondii GN=B456_002G230600 PE=4 SV=1[more]
A0A0B0MGC6_GOSAR1.8e-3082.28Monopolar spindle 2 OS=Gossypium arboreum GN=F383_19537 PE=4 SV=1[more]
A0A059DI87_EUCGR8.8e-3075.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02367 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G01170.12.7e-3072.73 Protein of unknown function (DUF1138)[more]
AT4G00860.13.4e-2561.04 Protein of unknown function (DUF1138)[more]
Match NameE-valueIdentityDescription
gi|659134221|ref|XP_008467091.1|3.8e-3493.42PREDICTED: uncharacterized protein LOC103504527 [Cucumis melo][more]
gi|449463344|ref|XP_004149394.1|5.5e-3388.75PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus][more]
gi|590636108|ref|XP_007028779.1|8.7e-3180.00Uncharacterized protein TCM_024708 [Theobroma cacao][more]
gi|823136581|ref|XP_012468054.1|2.5e-3081.25PREDICTED: uncharacterized protein LOC105786244 [Gossypium raimondii][more]
gi|728810096|gb|KHF99441.1|2.5e-3082.28Monopolar spindle 2 [Gossypium arboreum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009515DUF1138
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G018560.1Lsi01G018560.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009515Protein of unknown function DUF1138PFAMPF06592DUF1138coord: 52..124
score: 1.0
NoneNo IPR availablePANTHERPTHR34267FAMILY NOT NAMEDcoord: 51..128
score: 3.4
NoneNo IPR availablePANTHERPTHR34267:SF1AT0ZI1 PROTEINcoord: 51..128
score: 3.4