Lsi01G018560 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTATAGGAGTCCTCATGGTTTGCTTGAGATGGCTAATAAGGATTTGCAAGAAAAGGCACCAGATGGAATGTATCTGGTTAATGTTAAGGAACTACTAGGCAATGATATCCTTTCACTAAAAAAATCAGGCAATGATATGGTTAATTTGGATATATATTTCTAAAAGTTCGGACACACCGATGTATCTAGATGCAGGACAAACAAACACTTCAACTCAATTTTTTTTAAAAAAACATTTTTTAATTCGCGCCTTTTACAATGCTTACTGTTGAACCTGTTGCTAGGTAAAACCAAACACTGAAACTTCACCTGGCCCTAAAAAACTTATGAAAGGGAAAAAGAAACCACACTGCTGCTTGTTTCTCCCCTACGAGTTCATCTCACGATGTTAAATTTACATGTTTTTATGTACTTTAGAGTATTAAATGTCAATAGATGCATATTATATTTAAAAATTCATATCTTCAACTTGTTCGCGTCTTACTTTTCTGTTGTAGTTTGTGTTTGTGGTCCTCTTCCTCTTTGTGCACATGTCTGTCTGTGTTCAAGTCCACATTAGGATACTAGCTTTTGGTTCAATATGGGTGCAGTTTGATGTAATTGTGTGTATAGTAGGTCAATTGATTTGGGAACATATTAGTCCATTGCAGTTAGAAGATGGCAGCAAAATACATAGTAGGTTCTTTGCTTGGAGCAAGTGCAGTTGCGTATATTTCTGACCATCTTGTTGCTGACAAGAAAATATTTGGAGGTAATTACCAGTCATCATCATCATTTGGTTTTGCAGTTTCTTTGATATGCTACTTGCTACCCTTACTTTGCTTTACAGTTTCTTTGATGTGCTACCATTGCTCTATTGTCCTAATTTCTCATTCTTTTTAATGGATTTTGTTCAGGAACAACCCCAAGTACTGTTTCAAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAGGCATGGCCTCGTACCGCCGGTCCACCAGTGGTGATGAACCCCATCAGTCGCCAGAATTTCATCGTCAAAACCCACTCTGAAGCTTAAATATTACTTTGGTTGTCAAATTTTTACACTTTTGATTGGATCATTCTGCTTTTGGAAGTACATCCTAGTCTAGCAGTTCTAATCTGCCTTCACATTTTGAGTTGTGAACTTGAAGGATTTCTTGTTTGTTGTTCTGATGGCCATTCTTATTTCCTGTTTAAGTTGGCATCATTGGCTTGTTATGTTCAATGGTGACAGGATGTTGATTCTGAATAAATCAGTGAAAAAATAAAACTTCCCTTCATGTCTCTTTCAGACAATGTAAAATGATCATTCTTCTTATTTGCCTGATTTATAAGATCACCAAGCTCTCCATAGTTGTCTCATCTGCTTGTTTGTACAAGGACAATAACTTCTGGAAATTGTTTCCTTAGAATTGCTGCTCAAGTTGGTCTCTTTGGAGCTGTTTGGGGGTTTGTAATGGAATGAGTTTGAATTGTAATGTAGTTTAAAACCCATGTTTGGATTGAGCGTTTTGGATTTGATTTGTAATATTAAACTCGTTTTATTCCGATAATTTTTTATCAAACCCTCTTTCTTTTTC ATGGCCTATAGGAGTCCTCATGGTTTGCTTGAGATGGCTAATAAGGATTTGCAAGAAAAGGCACCAGATGGAATGTATCTGGTTAATGTTAAGGAACTACTAGGCAATGATATCCTTTCACTAAAAAAATCAGGCAATGATATGAAGATGGCAGCAAAATACATAGTAGGTTCTTTGCTTGGAGCAAGTGCAGTTGCGTATATTTCTGACCATCTTGTTGCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCAAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAGGCATGGCCTCGTACCGCCGGTCCACCAGTGGTGATGAACCCCATCAGTCGCCAGAATTTCATCGTCAAAACCCACTCTGAAGCTTAAATATTACTTTGGTTGTCAAATTTTTACACTTTTGATTGGATCATTCTGCTTTTGGAAGTACATCCTAGTCTAGCAGTTCTAATCTGCCTTCACATTTTGAGTTGTGAACTTGAAGGATTTCTTGTTTGTTGTTCTGATGGCCATTCTTATTTCCTGTTTAAGTTGGCATCATTGGCTTGTTATGTTCAATGGTGACAGGATGTTGATTCTGAATAAATCAGTGAAAAAATAAAACTTCCCTTCATGTCTCTTTCAGACAATGTAAAATGATCATTCTTCTTATTTGCCTGATTTATAAGATCACCAAGCTCTCCATAGTTGTCTCATCTGCTTGTTTGTACAAGGACAATAACTTCTGGAAATTGTTTCCTTAGAATTGCTGCTCAAGTTGGTCTCTTTGGAGCTGTTTGGGGGTTTGTAATGGAATGAGTTTGAATTGTAATGTAGTTTAAAACCCATGTTTGGATTGAGCGTTTTGGATTTGATTTGTAATATTAAACTCGTTTTATTCCGATAATTTTTTATCAAACCCTCTTTCTTTTTC ATGGCCTATAGGAGTCCTCATGGTTTGCTTGAGATGGCTAATAAGGATTTGCAAGAAAAGGCACCAGATGGAATGTATCTGGTTAATGTTAAGGAACTACTAGGCAATGATATCCTTTCACTAAAAAAATCAGGCAATGATATGAAGATGGCAGCAAAATACATAGTAGGTTCTTTGCTTGGAGCAAGTGCAGTTGCGTATATTTCTGACCATCTTGTTGCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCAAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAGGCATGGCCTCGTACCGCCGGTCCACCAGTGGTGATGAACCCCATCAGTCGCCAGAATTTCATCGTCAAAACCCACTCTGAAGCTTAA MAYRSPHGLLEMANKDLQEKAPDGMYLVNVKELLGNDILSLKKSGNDMKMAAKYIVGSLLGASAVAYISDHLVADKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTHSEA
BLAST of Lsi01G018560 vs. TrEMBL
Match: A0A0A0KYC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166930 PE=4 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 3.8e-33 Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 1
BLAST of Lsi01G018560 vs. TrEMBL
Match: A0A061EWV8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024708 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 6.1e-31 Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 1
BLAST of Lsi01G018560 vs. TrEMBL
Match: A0A0D2NRU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G230600 PE=4 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 1.8e-30 Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 1
BLAST of Lsi01G018560 vs. TrEMBL
Match: A0A0B0MGC6_GOSAR (Monopolar spindle 2 OS=Gossypium arboreum GN=F383_19537 PE=4 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 1.8e-30 Identity = 65/79 (82.28%), Postives = 72/79 (91.14%), Query Frame = 1
BLAST of Lsi01G018560 vs. TrEMBL
Match: A0A059DI87_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02367 PE=4 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 8.8e-30 Identity = 60/80 (75.00%), Postives = 72/80 (90.00%), Query Frame = 1
BLAST of Lsi01G018560 vs. TAIR10
Match: AT1G01170.1 (AT1G01170.1 Protein of unknown function (DUF1138)) HSP 1 Score: 128.6 bits (322), Expect = 2.7e-30 Identity = 56/77 (72.73%), Postives = 66/77 (85.71%), Query Frame = 1
BLAST of Lsi01G018560 vs. TAIR10
Match: AT4G00860.1 (AT4G00860.1 Protein of unknown function (DUF1138)) HSP 1 Score: 111.7 bits (278), Expect = 3.4e-25 Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1
BLAST of Lsi01G018560 vs. NCBI nr
Match: gi|659134221|ref|XP_008467091.1| (PREDICTED: uncharacterized protein LOC103504527 [Cucumis melo]) HSP 1 Score: 152.9 bits (385), Expect = 3.8e-34 Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = 1
BLAST of Lsi01G018560 vs. NCBI nr
Match: gi|449463344|ref|XP_004149394.1| (PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus]) HSP 1 Score: 149.1 bits (375), Expect = 5.5e-33 Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 1
BLAST of Lsi01G018560 vs. NCBI nr
Match: gi|590636108|ref|XP_007028779.1| (Uncharacterized protein TCM_024708 [Theobroma cacao]) HSP 1 Score: 141.7 bits (356), Expect = 8.7e-31 Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 1
BLAST of Lsi01G018560 vs. NCBI nr
Match: gi|823136581|ref|XP_012468054.1| (PREDICTED: uncharacterized protein LOC105786244 [Gossypium raimondii]) HSP 1 Score: 140.2 bits (352), Expect = 2.5e-30 Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 1
BLAST of Lsi01G018560 vs. NCBI nr
Match: gi|728810096|gb|KHF99441.1| (Monopolar spindle 2 [Gossypium arboreum]) HSP 1 Score: 140.2 bits (352), Expect = 2.5e-30 Identity = 65/79 (82.28%), Postives = 72/79 (91.14%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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