Cp4.1LG19g00620 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG19g00620
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionOzone-responsive stress related protein
LocationCp4.1LG19 : 435284 .. 437725 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTTAAGAAAAACAAAAGTCAGCCCACTTTGTAAAATAAAATAAAAACAATTTATGGATGTACAGACCGACCGAACCGAACCGGTTCGGTTCGATTTTAACCTAACCAATTCAGGAGTGGGTATCCCGAAGTCTCACACGCGTCTTTCTTAACACGCGAAGTTTCTCTCTGCTCTTCCAATTTGCCTCTCTCTCTCTCCCGCCTTCCTCACCGCCGCCCGCAGCCCTTCTCCCATCGACGTCGGTCCCTTTTCAGGCGACATTAAATCAGGTACTGATGAAGAATAGTCCGGGAGGAATTTTCGGATCTGATTTTTCTTTTCTCCTCCTTATTTATTATATCTTCTAATTTTCTTTTTTGTGTTTGTTTGTTTTTTATTTTCTTCGATCCATTTTTGTTCTGTTATGAGCTTTAGATTTTCTGTATGGCAAGGTGAAGAAAAGAGACCCCTTTTTGTGGATCTATTCACGTTTTCTTGTTCTATTTTCAAATTATTTGTATGATTTTTTTTCACCTATCTTTGATCACGATTCTGAAACAACCGTCTTCAATTTCATTCTAAAGATAAAGAGAAGTTACTAAGAGGTTCTTAGTAATCCCCAATCTCAGGCTATATGTATTTGATTCTTAGCTGTTGGGATTTATTCTGATTCAACTCAATCTTCCGGGTATTGTTTGCTATTTTTCTACATTGGCAAACTTTTATTCAGATTCTTTGTTCCTTCTTTCTTCCTGTTTGTGATCTTTTCTGGATTTTCCCTTTTGATTATTAGGGAGGAGAGATATGAAGGTGAACCACAGATTTTTTAGTGCTTCTAAATTGAAAACAGATGGTTGAGACTGATATTAATCTTTCACAAAAGAGAGAAGAAAAAGAGTATTGGTTGGGTATGTGTATCATGTCATTTGAATTAAGAAGGTAGTTGGGTTTGGAATGATGTCTTAGAATAAAAATCTTTGAGTGGCTTTAGGGTTTTTATTGGGATTTGATAATTTTGGATGAGAGAGGAGAGAGTAGATGGAAGCAGAAACTCACAAGTCTCTGCAATTAGGGAGTTCATTTCCTTGTCAAGTTTGTGTTGTGGGTTTCCTCTGTGGAGTTTGTATTGCTTCTCTGTTTCTTGGTGCTTTTACCTTATTTGGTGTCCCTTTGGAATTCACTTTGGAACTCAACTTCTGAAAATATTAGTAAAAGTTGTCATCATCATAGGAACTATTAAGCTTCAGTCATACTATTTTTCATCCAGATATTGTTTATGTTTCTGTTTCTTTTTTTCTAAACATAAATGGTTACGGTCATGCTATGAAAAACTTCATTATGACTTTCTTTTGAAATCTAAGAAAAGAAAGAAATCAAAGAGTATTCTCGGAGGTGTATAAAGCTTTTCAACGATGTTGTTTACCGCACTATATCTTGGTGTAAATTGTCTAATACTTTTGTTTCCTGGAGTCACACCTCCCTTGTAATATGGGGAGGTTTTTTCTATAATTATCATGGACAACACATGCCGTTTGTATATGAAATCGAGAAACAGGAAATTAGAAACAAAAATGTTCGTAAATGAGATTGAGAAACAGGAAATTAGAAACAAAAATGTTATCTATTGGGGCCATTACTTAACTTAATAAAGTTCACATAGATAGATGTAGCTGGTGGAGTTTGGTGCAGTTTGATGTAATCCTGTGTATAATATGGTTCATTTGACTTGGGAACGTATCGATCCATTGCAGTTAGACGATGGCAGCGAAGTACGTGACAGCTTCTCTAGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGTAATGATAGTTTCTTTGGACTGCGGCCATTGCTTGGCTTTCAGTTTCTTTGATGTGCTACCATTGCTCTGTTGTGTTGATTTAATTTGTTTCCAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCTGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAAATGTTACTTTAGTTGTGAATCTTTACACTTTTGATTGGATGGATCATTCTGGTTTGAAACAACTGCCTAGTCATTAAGCAGTTCTAATCTGCCTAGCCTTCATGTTTTGAGTTGGGAACTTGAAGCAATTCTTGTTGTTCTGATAGTCATTCTTATTTCCTCTTTAAAAGTTGCATCGTTGGTTTGTTATGATGATGATGTCATGATGTTGAATCTTAAATAATGCAGTGGAAAATTTCCCACCTCCTTCAGACAACGAAGAATCACCATCTTTCTTATTTACTTTGATTTATGAGATCCCCAAGTTCTTCATAGGTGTCTGGTTTGCTTGTTTATGATTTCTTTGTTGCTGTAATTTTTGGGT

mRNA sequence

TCTTTAAGAAAAACAAAAGTCAGCCCACTTTGTAAAATAAAATAAAAACAATTTATGGATGTACAGACCGACCGAACCGAACCGGTTCGGTTCGATTTTAACCTAACCAATTCAGGAGTGGGTATCCCGAAGTCTCACACGCGTCTTTCTTAACACGCGAAGTTTCTCTCTGCTCTTCCAATTTGCCTCTCTCTCTCTCCCGCCTTCCTCACCGCCGCCCGCAGCCCTTCTCCCATCGACGTCGGTCCCTTTTCAGGCGACATTAAATCAGTTAGACGATGGCAGCGAAGTACGTGACAGCTTCTCTAGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCTGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAAATGTTACTTTAGTTGTGAATCTTTACACTTTTGATTGGATGGATCATTCTGGTTTGAAACAACTGCCTAGTCATTAAGCAGTTCTAATCTGCCTAGCCTTCATGTTTTGAGTTGGGAACTTGAAGCAATTCTTGTTGTTCTGATAGTCATTCTTATTTCCTCTTTAAAAGTTGCATCGTTGGTTTGTTATGATGATGATGTCATGATGTTGAATCTTAAATAATGCAGTGGAAAATTTCCCACCTCCTTCAGACAACGAAGAATCACCATCTTTCTTATTTACTTTGATTTATGAGATCCCCAAGTTCTTCATAGGTGTCTGGTTTGCTTGTTTATGATTTCTTTGTTGCTGTAATTTTTGGGT

Coding sequence (CDS)

ATGGCAGCGAAGTACGTGACAGCTTCTCTAGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCTGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAA

Protein sequence

MAAKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA
BLAST of Cp4.1LG19g00620 vs. TrEMBL
Match: A0A0A0KYC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166930 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.6e-32
Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = 1

Query: 1  MAAKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MAAKY+  SL+G   +AYI D+L+SDKKIFGGTTPSTVSNSEW EETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTRPE+
Sbjct: 61 PVVMNPISRQNFIVKTRPES 80

BLAST of Cp4.1LG19g00620 vs. TrEMBL
Match: A0A0D2NRU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G230600 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.4e-31
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 1

Query: 1  MAAKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MAAKY+ ASL G+FAIAY++D LVSD KIFGGTTPSTVSN  WWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIIASLAGSFAIAYVSDLLVSDSKIFGGTTPSTVSNKGWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVK+  E+
Sbjct: 61 PVVMNPISRQNFIVKSGSES 80

BLAST of Cp4.1LG19g00620 vs. TrEMBL
Match: A9P9Z0_POPTR (Stress-related ozone-induced family protein OS=Populus trichocarpa GN=POPTR_0006s05040g PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.2e-30
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 1

Query: 1  MAAKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          M+ KY+ ++LVG+FAIAY+ DY+VSDKKIFGGTTP TVSN EWWEETDKKFQAWPRT GP
Sbjct: 1  MSTKYIVSALVGSFAIAYVCDYVVSDKKIFGGTTPRTVSNKEWWEETDKKFQAWPRTGGP 60

Query: 61 PVVMNPISRQNFIVKTR 78
          PVVMNPI+RQNFIVK++
Sbjct: 61 PVVMNPITRQNFIVKSQ 77

BLAST of Cp4.1LG19g00620 vs. TrEMBL
Match: A0A061EWV8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024708 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.4e-30
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 1

Query: 1  MAAKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA KY+  +++G+FAIAY+ D L++DKKIFGGTTPSTVSN EWWEETDKKFQAWPRTAGP
Sbjct: 1  MATKYIIPAVLGSFAIAYVCDQLIADKKIFGGTTPSTVSNKEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVK   E+
Sbjct: 61 PVVMNPISRQNFIVKAGSES 80

BLAST of Cp4.1LG19g00620 vs. TrEMBL
Match: A0A0B0PHX2_GOSAR (Nucleolar 12 OS=Gossypium arboreum GN=F383_30394 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 7.1e-30
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 1

Query: 1  MAAKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MAAKY+ AS+ G+FAIAY++D LVSD KIFGGTTPSTVSN  WWEETDKKFQAWPR AGP
Sbjct: 1  MAAKYIIASVAGSFAIAYVSDLLVSDSKIFGGTTPSTVSNKGWWEETDKKFQAWPRKAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVK+  E+
Sbjct: 61 PVVMNPISRQNFIVKSGSES 80

BLAST of Cp4.1LG19g00620 vs. TAIR10
Match: AT1G01170.1 (AT1G01170.1 Protein of unknown function (DUF1138))

HSP 1 Score: 132.9 bits (333), Expect = 8.9e-32
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1

Query: 3  AKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPV 62
          AKY+  +L+G+F I+YI D ++SD KIFGGTTP TVSN EWW  TD+KFQAWPRTAGPPV
Sbjct: 7  AKYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPV 66

Query: 63 VMNPISRQNFIVKTRPE 80
          VMNPISRQNFIVKTRPE
Sbjct: 67 VMNPISRQNFIVKTRPE 83

BLAST of Cp4.1LG19g00620 vs. TAIR10
Match: AT4G00860.1 (AT4G00860.1 Protein of unknown function (DUF1138))

HSP 1 Score: 111.3 bits (277), Expect = 2.8e-25
Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 1

Query: 3  AKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPV 62
          A Y+  +L G+  +AY+ D ++SD K+FGGTTP T++N EW   T+++ QAWPR AGPPV
Sbjct: 4  ATYIIGALAGSAVVAYVCDKVISDDKLFGGTTPGTITNKEWGAATEERLQAWPRVAGPPV 63

Query: 63 VMNPISRQNFIVKTRPE 80
          VMNPISRQNFIVK+RPE
Sbjct: 64 VMNPISRQNFIVKSRPE 80

BLAST of Cp4.1LG19g00620 vs. NCBI nr
Match: gi|449463344|ref|XP_004149394.1| (PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = 1

Query: 1  MAAKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MAAKY+  SL+G   +AYI D+L+SDKKIFGGTTPSTVSNSEW EETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVKTRPE+
Sbjct: 61 PVVMNPISRQNFIVKTRPES 80

BLAST of Cp4.1LG19g00620 vs. NCBI nr
Match: gi|659134221|ref|XP_008467091.1| (PREDICTED: uncharacterized protein LOC103504527 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 1

Query: 1  MAAKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MAAKY+  SL+G  A+AYI D+L+SDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIVGSLLGATAVAYIGDHLISDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTR 78
          PVVMNPISRQNFIVK+R
Sbjct: 61 PVVMNPISRQNFIVKSR 77

BLAST of Cp4.1LG19g00620 vs. NCBI nr
Match: gi|823136581|ref|XP_012468054.1| (PREDICTED: uncharacterized protein LOC105786244 [Gossypium raimondii])

HSP 1 Score: 141.0 bits (354), Expect = 9.2e-31
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 1

Query: 1  MAAKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MAAKY+ ASL G+FAIAY++D LVSD KIFGGTTPSTVSN  WWEETDKKFQAWPRTAGP
Sbjct: 1  MAAKYIIASLAGSFAIAYVSDLLVSDSKIFGGTTPSTVSNKGWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVK+  E+
Sbjct: 61 PVVMNPISRQNFIVKSGSES 80

BLAST of Cp4.1LG19g00620 vs. NCBI nr
Match: gi|566174546|ref|XP_002308950.2| (stress-related ozone-induced family protein [Populus trichocarpa])

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-30
Identity = 61/77 (79.22%), Postives = 71/77 (92.21%), Query Frame = 1

Query: 1  MAAKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          M+ KY+ ++LVG+FAIAY+ DY+VSDKKIFGGTTP TVSN EWWEETDKKFQAWPRT GP
Sbjct: 1  MSTKYIVSALVGSFAIAYVCDYVVSDKKIFGGTTPRTVSNKEWWEETDKKFQAWPRTGGP 60

Query: 61 PVVMNPISRQNFIVKTR 78
          PVVMNPI+RQNFIVK++
Sbjct: 61 PVVMNPITRQNFIVKSQ 77

BLAST of Cp4.1LG19g00620 vs. NCBI nr
Match: gi|590636108|ref|XP_007028779.1| (Uncharacterized protein TCM_024708 [Theobroma cacao])

HSP 1 Score: 137.9 bits (346), Expect = 7.8e-30
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 1

Query: 1  MAAKYVTASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60
          MA KY+  +++G+FAIAY+ D L++DKKIFGGTTPSTVSN EWWEETDKKFQAWPRTAGP
Sbjct: 1  MATKYIIPAVLGSFAIAYVCDQLIADKKIFGGTTPSTVSNKEWWEETDKKFQAWPRTAGP 60

Query: 61 PVVMNPISRQNFIVKTRPEA 81
          PVVMNPISRQNFIVK   E+
Sbjct: 61 PVVMNPISRQNFIVKAGSES 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KYC7_CUCSA7.6e-3283.75Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166930 PE=4 SV=1[more]
A0A0D2NRU0_GOSRA6.4e-3182.50Uncharacterized protein OS=Gossypium raimondii GN=B456_002G230600 PE=4 SV=1[more]
A9P9Z0_POPTR3.2e-3079.22Stress-related ozone-induced family protein OS=Populus trichocarpa GN=POPTR_0006... [more]
A0A061EWV8_THECC5.4e-3077.50Uncharacterized protein OS=Theobroma cacao GN=TCM_024708 PE=4 SV=1[more]
A0A0B0PHX2_GOSAR7.1e-3080.00Nucleolar 12 OS=Gossypium arboreum GN=F383_30394 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G01170.18.9e-3276.62 Protein of unknown function (DUF1138)[more]
AT4G00860.12.8e-2561.04 Protein of unknown function (DUF1138)[more]
Match NameE-valueIdentityDescription
gi|449463344|ref|XP_004149394.1|1.1e-3183.75PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus][more]
gi|659134221|ref|XP_008467091.1|1.1e-3185.71PREDICTED: uncharacterized protein LOC103504527 [Cucumis melo][more]
gi|823136581|ref|XP_012468054.1|9.2e-3182.50PREDICTED: uncharacterized protein LOC105786244 [Gossypium raimondii][more]
gi|566174546|ref|XP_002308950.2|4.6e-3079.22stress-related ozone-induced family protein [Populus trichocarpa][more]
gi|590636108|ref|XP_007028779.1|7.8e-3077.50Uncharacterized protein TCM_024708 [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009515DUF1138
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g00620.1Cp4.1LG19g00620.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009515Protein of unknown function DUF1138PFAMPF06592DUF1138coord: 3..75
score: 6.2
NoneNo IPR availablePANTHERPTHR34267FAMILY NOT NAMEDcoord: 2..79
score: 1.3
NoneNo IPR availablePANTHERPTHR34267:SF1AT0ZI1 PROTEINcoord: 2..79
score: 1.3

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG19g00620Cp4.1LG10g11620Cucurbita pepo (Zucchini)cpecpeB085
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g00620Wax gourdcpewgoB0617
Cp4.1LG19g00620Cucurbita pepo (Zucchini)cpecpeB079
Cp4.1LG19g00620Cucumber (Gy14) v1cgycpeB0452
Cp4.1LG19g00620Bottle gourd (USVL1VR-Ls)cpelsiB398
Cp4.1LG19g00620Watermelon (Charleston Gray)cpewcgB434
Cp4.1LG19g00620Watermelon (Charleston Gray)cpewcgB437
Cp4.1LG19g00620Watermelon (97103) v1cpewmB488
Cp4.1LG19g00620Melon (DHL92) v3.5.1cpemeB451
Cp4.1LG19g00620Melon (DHL92) v3.5.1cpemeB465
Cp4.1LG19g00620Melon (DHL92) v3.6.1cpemedB534
Cp4.1LG19g00620Melon (DHL92) v3.6.1cpemedB536