CmoCh07G013660 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G013660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description40S ribosomal protein S28
LocationCmo_Chr07 : 7744702 .. 7748207 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCCCAAATCAAACACGCTGTGGTGGTCAAAGTAATGGGTAGAACTGGATCAAGAGGGCAAGTGACGCAAGTGAGAGTTAAGTTTCTCGACGATCAGAATCGATACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACTCTACTAGAGTCTGAGAGAGAAGCCAGGAGGTTGCGTTGATGATGCCATGTTCCTGGTTCTCGTGTTACAGTTACCGATGATTTTCCTTCTCATCATAATACACTCTTTACGACTCGAATGATGTCTGCTATCAATTTTCGCATGTTTTCAGAAATCTGGTTTTTGGTTACTGGCATGTTGTGTCTCAAACCTTGGATTTGAAGGTAGAATGTTTGAAGTGGATGAGATAATTTATTTGAATAGTCAAATGATTTAATTATTCTATCTCTATTTTCTGCCAAAAGGGATTATTTTTTGTTTCGAGCGTGAAGAATTTTGGGGCGTACAATAAATTTGGTAATTTAAAATTCAATGACATAATTTTAAAAATTAAGAAAAATGTTACAAAATTTACAATGAATTATGTTAAGCTAAAAATAAAGTACGAATTAAAAATATTCAATTATATATTCAATTTTAAATTTAATTTAATTTAATTTATCAAAGTTTTTTTCTTATTTACTATCTTATTTTTGTAAGTTTTTTTTTCTTAAGAAAAACTCAGCCCACTTTGTAAAATAAAATAAAAACAATTTATAGATGTACAGACCGACCGGACCGGTTCGGTTCGGTTCGATTTAACCTAACCAATTCAGGAGTGGGTATCCCGAAGTCTCACACGCGTCTTTCTTAACACGCGAAGTTTCTCCCTGCTCTTCCAATTTGCCTCTTTCTCTCTCGTCTTCCTCACCGCCGCCCGCAGCCCTTCTCCCGTCGACGTCGGTCCCTTTTCTGGCGACATCAAATCAGGTACTCATGAAGAATAGTCCGGGAGGAATTTTCGGATCTGATTTTTCTTTTCGCAATCCCCCTCGCCTACCCTCTCTTTTCTCTTCCTTGTGTACTATATCTTCTAATTTTCTTTTTTGTGTTTGTTTTTTTATTTTCTTCGATCCATTTTTGTTCTGTTATGAGCTTTAGATTTTCTGTATGGCAAGGTGAAGAAAAGAGACCCCTTTTTGTGGATCTATTCATGTTTTCTTGTTCTATTTTCAAATTATTTGTATGATTTTTTTTTTTTTTAATACAAGTATCTGGATTTTTTTCACCTATCTTTGATGACGATTCTGAAACAACCGTCTTCAATTTCATTCGAAAGATAAATAGAAGTTACTAAGAGGTTCTTAGTAATCCCCAATCTCAGGCTATATGTATTTGATTCTTAGCTGTTGGGATTTATTCTAATTCAACTCAATCTTCCGGGTATTGTTTGCTACTTTTCTACATTGGCAAACTTATATTCAGATTATTTGTTCCTTCTTTCTTCCTGATTGTGATCTTTTGTGGATTTTCCCTTTTGATTATTAGGGAGGAGAGATATGAAGGTGAACCACAGATTTTTTAGTGCTTCTAAATTGAAAACAGATGGTTGAGACTGATATTAATCTTTCACAAAAGAGAGAAGATAAAGAGTATTGGTTGGGTATGTGTATCATGTCATTTGAATTAAGAAGGTAGTTGGGTTTGGAATGATGTCGTAGAATAAAAATCTTTTGAGTGGCTTTAGGGTTTTTATTGGGATTTGATAATTTTGGATGAGAAAGAAGAGAGTAGATGGAAGCAGACACTCAGAAGTCTCTGCAATTAGGGAGTTCATTTCCTTGCCATGTTTGTGTTGTGGGTTTCCTCTGTGGAGTTTGTATTGCTTCTCTATTTCTTGGTGCTTTTACTTTATTTGGTGTCCCTTTGGAATTTGGTTGGAGTTTTTTCTCACCCAATTCAATGTATGCTTCACTTTGGAACTCAACTTCTGAAAATATTAGTAAAAGTTGTCATCATCATAGGAATATTAAGCTTCAGTCATACTATTTTTCATCCAGTTATTGTTTATGTTTCTGTTTCTTTTTTTCTAAACATAATTAGTTATGGTCATGCTACGAAAAAACCTCATTATGACTTTCTTTTGAAATCTAAGAAAAGAAAGAAATCAAAGAGTATTGTCGGAGGTGTACAAAGCTTTTCAATGATGTTGTTTACCGCGCTATATCTTGGTGTAAATTGTCTAATACTTTTGTTTCCTGGAGTCACACCTCCCTCGTAGTAAATTGGGGAGGTTCTTTCTGTAATTATCATGGACAACACATGGCGTTCGTAAATGAAATTGAGAAACAGGAAATTAGAAACAAAAATGTTTGTAAATGAAATCGAGAAGCAGGAAATTAGAAACCAAAATGTTATCTATTGGGGCCTTTACTTAACTTAATAAAGTAGATAGATGTAGCTGGTGGAGTTTGGTGCAGTTTGATCTAATCCTGTGTATAATATGGTTCATTTGACTTGGGAACGTATCGATCCATTGCAGTTAGACGATGGCATCGAAGTACGTTGCAGCTTCTTTAGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGTAATGATAGTTTCTTTGGACTGCGGCCATTGCTTGGCTTTCAGTTTCTTTGATGTGCTACCATTGCTTTGTTGTGTTGATTTAATTTGTTTTCAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAAATGTTACATTAGTTGTGAATCTATACACTTTTGATTGGATGGATCATTCTGGTTTGAAACTACTGCCTAGTCATTAAGCAGTTCTAATCTGCCTTGCCTTCATGTTTTGAGTTGGGAACTTGAAGCAATTCTTGTTGTTCTGATAGTCATTCTTATTTCCTCTTTAAAAGTTGCATCGTTAGTTTGTTATGATGATGATGATGTCATGATGTTGAATCTTAAATAATGCAGTGGAAAATTTCCCACCTCCTTCAGACAACGAGCAATCATCATCTTTCTTATTTACTTTGATTTATGAGATCCCCAAGTTCTTCATAGGTGTCTGGTTTGCTTGTTTATGATTTCTTTGCTTGATAGTCCAAACCCACTGTTAGTTGGTATTGTCGTCTTTGGGTTTTCCTCTAAGGTTTTTAATATTTCGGTTGACGGAGATTTCTTACACCCTTATAAAGAATGTGATTTGTTCTCTCCAATTGACGTGGGATCTCACAACCCACCTTGTCATGTGGGACCTCCCAATTCACCCACCTTTGGGGTTTGATGTCCTTGTTGGCACACCACCTTGTGCCCAGCCCTGTGTCCACCCCCTTTTGGGGCTGAAGGCTGGCACACCAACTTGTGTCCAGCCTCGAGTCCACTCCCTTTCAAGGTTGAGCCTCC

mRNA sequence

ATGGAATCCCAAATCAAACACGCTGTGGTGGTCAAAGTAATGGGTAGAACTGGATCAAGAGGGCAAGTGACGCAAGTGAGAGTTAAGTTTCTCGACGATCAGAATCGATACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACTCTACTAGAGTCTGAGAGAGAAGCCAGGAGAAATCTGGTTTTTGGTTACTGGCATGTTGTGTCTCAAACCTTGGATTTGAAGGTAGAATGTTTGAAGAGTGGGTATCCCGAAGTCTCACACGCGTCTTTCTTAACACGCGAAGTTTCTCCCTGCTCTTCCAATTTGCCTCTTTCTCTCTCGTCTTCCTCACCGCCGCCCGCAGCCCTTCTCCCGTCGACGTCGGTCCCTTTTCTGGCGACATCAAATCAGACGATGGCATCGAAGTACGTTGCAGCTTCTTTAGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAAATGTTACATTAGTTGTGAATCTATACACTTTTGATTGGATGGATCATTCTGGTTTGAAACTACTGCCTAGTCATTAAGCAGTTCTAATCTGCCTTGCCTTCATGTTTTGAGTTGGGAACTTGAAGCAATTCTTGTTGTTCTGATAGTCATTCTTATTTCCTCTTTAAAAGTTGCATCGTTAGTTTGTTATGATGATGATGATGTCATGATGTTGAATCTTAAATAATGCAGTGGAAAATTTCCCACCTCCTTCAGACAACGAGCAATCATCATCTTTCTTATTTACTTTGATTTATGAGATCCCCAAGTTCTTCATAGGTGTCTGGTTTGCTTGTTTATGATTTCTTTGCTTGATAGTCCAAACCCACTGTTAGTTGGTATTGTCGTCTTTGGGTTTTCCTCTAAGGTTTTTAATATTTCGGTTGACGGAGATTTCTTACACCCTTATAAAGAATGTGATTTGTTCTCTCCAATTGACGTGGGATCTCACAACCCACCTTGTCATGTGGGACCTCCCAATTCACCCACCTTTGGGGTTTGATGTCCTTGTTGGCACACCACCTTGTGCCCAGCCCTGTGTCCACCCCCTTTTGGGGCTGAAGGCTGGCACACCAACTTGTGTCCAGCCTCGAGTCCACTCCCTTTCAAGGTTGAGCCTCC

Coding sequence (CDS)

ATGGAATCCCAAATCAAACACGCTGTGGTGGTCAAAGTAATGGGTAGAACTGGATCAAGAGGGCAAGTGACGCAAGTGAGAGTTAAGTTTCTCGACGATCAGAATCGATACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACTCTACTAGAGTCTGAGAGAGAAGCCAGGAGAAATCTGGTTTTTGGTTACTGGCATGTTGTGTCTCAAACCTTGGATTTGAAGGTAGAATGTTTGAAGAGTGGGTATCCCGAAGTCTCACACGCGTCTTTCTTAACACGCGAAGTTTCTCCCTGCTCTTCCAATTTGCCTCTTTCTCTCTCGTCTTCCTCACCGCCGCCCGCAGCCCTTCTCCCGTCGACGTCGGTCCCTTTTCTGGCGACATCAAATCAGACGATGGCATCGAAGTACGTTGCAGCTTCTTTAGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAACTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAA
Homology
[Close]
BLAST of CmoCh07G013660 vs. Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-23
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 61 ARR 64
          ARR
Sbjct: 61 ARR 63

[Close]
BLAST of CmoCh07G013660 vs. Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.7e-23
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARR 64
          ARR
Sbjct: 61 ARR 62

[Close]
BLAST of CmoCh07G013660 vs. Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.6e-23
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARR 64
          ARR
Sbjct: 61 ARR 62

[Close]
BLAST of CmoCh07G013660 vs. Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 1 

Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARR
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARR 67

[Close]
BLAST of CmoCh07G013660 vs. Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 1 

Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARR
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARR 67

[Close]
BLAST of CmoCh07G013660 vs. TrEMBL
Match: A0A0A0KYC7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166930 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.5e-31
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1 

Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           MA+KY+  SL+G   +AYI D+L+SDKKIFGGTTPSTVSNSEW EETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 198 PVVMNPISRQNFIVKTRPEA 218
           PVVMNPISRQNFIVKTRPE+
Sbjct: 61  PVVMNPISRQNFIVKTRPES 80

[Close]
BLAST of CmoCh07G013660 vs. TrEMBL
Match: A0A0D2NRU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G230600 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.0e-30
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 1 

Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           MA+KY+ ASL G+FAIAY++D LVSD KIFGGTTPSTVSN  WWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIIASLAGSFAIAYVSDLLVSDSKIFGGTTPSTVSNKGWWEETDKKFQAWPRTAGP 60

Query: 198 PVVMNPISRQNFIVKTRPEA 218
           PVVMNPISRQNFIVK+  E+
Sbjct: 61  PVVMNPISRQNFIVKSGSES 80

[Close]
BLAST of CmoCh07G013660 vs. TrEMBL
Match: A9P9Z0_POPTR (Stress-related ozone-induced family protein OS=Populus trichocarpa GN=POPTR_0006s05040g PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.1e-30
Identity = 61/77 (79.22%), Postives = 72/77 (93.51%), Query Frame = 1 

Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           M++KY+ ++LVG+FAIAY+ DY+VSDKKIFGGTTP TVSN EWWEETDKKFQAWPRT GP
Sbjct: 1   MSTKYIVSALVGSFAIAYVCDYVVSDKKIFGGTTPRTVSNKEWWEETDKKFQAWPRTGGP 60

Query: 198 PVVMNPISRQNFIVKTR 215
           PVVMNPI+RQNFIVK++
Sbjct: 61  PVVMNPITRQNFIVKSQ 77

[Close]
BLAST of CmoCh07G013660 vs. TrEMBL
Match: A0A061EWV8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024708 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 8.7e-30
Identity = 62/80 (77.50%), Postives = 72/80 (90.00%), Query Frame = 1 

Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           MA+KY+  +++G+FAIAY+ D L++DKKIFGGTTPSTVSN EWWEETDKKFQAWPRTAGP
Sbjct: 1   MATKYIIPAVLGSFAIAYVCDQLIADKKIFGGTTPSTVSNKEWWEETDKKFQAWPRTAGP 60

Query: 198 PVVMNPISRQNFIVKTRPEA 218
           PVVMNPISRQNFIVK   E+
Sbjct: 61  PVVMNPISRQNFIVKAGSES 80

[Close]
BLAST of CmoCh07G013660 vs. TrEMBL
Match: B9S0H2_RICCO (ATOZI1, putative OS=Ricinus communis GN=RCOM_1354880 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-29
Identity = 61/77 (79.22%), Postives = 70/77 (90.91%), Query Frame = 1 

Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           MA+KY+ ++L G+FAIAY+ D L+SDKKIFGGTTP TV+N +WWEETDKKFQAWPRTAGP
Sbjct: 1   MATKYIISALAGSFAIAYVCDQLISDKKIFGGTTPHTVANKDWWEETDKKFQAWPRTAGP 60

Query: 198 PVVMNPISRQNFIVKTR 215
           PVVMNPISRQNFIVK R
Sbjct: 61  PVVMNPISRQNFIVKPR 77

[Close]
BLAST of CmoCh07G013660 vs. TAIR10
Match: AT1G01170.1 (AT1G01170.1 Protein of unknown function (DUF1138))

HSP 1 Score: 131.7 bits (330), Expect = 5.4e-31
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 1 

Query: 140 SKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPV 199
           +KY+  +L+G+F I+YI D ++SD KIFGGTTP TVSN EWW  TD+KFQAWPRTAGPPV
Sbjct: 7   AKYIIGALIGSFGISYIFDKVISDNKIFGGTTPGTVSNKEWWAATDEKFQAWPRTAGPPV 66

Query: 200 VMNPISRQNFIVKTRPE 217
           VMNPISRQNFIVKTRPE
Sbjct: 67  VMNPISRQNFIVKTRPE 83

[Close]
BLAST of CmoCh07G013660 vs. TAIR10
Match: AT3G10090.1 (AT3G10090.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 110.9 bits (276), Expect = 9.8e-25
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARR 64
          ARR
Sbjct: 61 ARR 62

[Close]
BLAST of CmoCh07G013660 vs. TAIR10
Match: AT5G03850.1 (AT5G03850.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 110.9 bits (276), Expect = 9.8e-25
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARR 64
          ARR
Sbjct: 61 ARR 62

[Close]
BLAST of CmoCh07G013660 vs. TAIR10
Match: AT4G00860.1 (AT4G00860.1 Protein of unknown function (DUF1138))

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-24
Identity = 46/75 (61.33%), Postives = 60/75 (80.00%), Query Frame = 1 

Query: 142 YVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVM 201
           Y+  +L G+  +AY+ D ++SD K+FGGTTP T++N EW   T+++ QAWPR AGPPVVM
Sbjct: 6   YIIGALAGSAVVAYVCDKVISDDKLFGGTTPGTITNKEWGAATEERLQAWPRVAGPPVVM 65

Query: 202 NPISRQNFIVKTRPE 217
           NPISRQNFIVK+RPE
Sbjct: 66  NPISRQNFIVKSRPE 80

[Close]
BLAST of CmoCh07G013660 vs. TAIR10
Match: AT5G64140.1 (AT5G64140.1 ribosomal protein S28)

HSP 1 Score: 109.0 bits (271), Expect = 3.7e-24
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 1 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARR 64
          ARR
Sbjct: 61 ARR 62

[Close]
BLAST of CmoCh07G013660 vs. NCBI nr
Match: gi|449463344|ref|XP_004149394.1| (PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 5.0e-31
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1 

Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           MA+KY+  SL+G   +AYI D+L+SDKKIFGGTTPSTVSNSEW EETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIVGSLLGACGVAYICDHLISDKKIFGGTTPSTVSNSEWLEETDKKFQAWPRTAGP 60

Query: 198 PVVMNPISRQNFIVKTRPEA 218
           PVVMNPISRQNFIVKTRPE+
Sbjct: 61  PVVMNPISRQNFIVKTRPES 80

[Close]
BLAST of CmoCh07G013660 vs. NCBI nr
Match: gi|659134221|ref|XP_008467091.1| (PREDICTED: uncharacterized protein LOC103504527 [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 5.0e-31
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1 

Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           MA+KY+  SL+G  A+AYI D+L+SDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIVGSLLGATAVAYIGDHLISDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 60

Query: 198 PVVMNPISRQNFIVKTR 215
           PVVMNPISRQNFIVK+R
Sbjct: 61  PVVMNPISRQNFIVKSR 77

[Close]
BLAST of CmoCh07G013660 vs. NCBI nr
Match: gi|823136581|ref|XP_012468054.1| (PREDICTED: uncharacterized protein LOC105786244 [Gossypium raimondii])

HSP 1 Score: 140.2 bits (352), Expect = 4.3e-30
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 1 

Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           MA+KY+ ASL G+FAIAY++D LVSD KIFGGTTPSTVSN  WWEETDKKFQAWPRTAGP
Sbjct: 1   MAAKYIIASLAGSFAIAYVSDLLVSDSKIFGGTTPSTVSNKGWWEETDKKFQAWPRTAGP 60

Query: 198 PVVMNPISRQNFIVKTRPEA 218
           PVVMNPISRQNFIVK+  E+
Sbjct: 61  PVVMNPISRQNFIVKSGSES 80

[Close]
BLAST of CmoCh07G013660 vs. NCBI nr
Match: gi|566174546|ref|XP_002308950.2| (stress-related ozone-induced family protein [Populus trichocarpa])

HSP 1 Score: 139.4 bits (350), Expect = 7.3e-30
Identity = 61/77 (79.22%), Postives = 72/77 (93.51%), Query Frame = 1 

Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           M++KY+ ++LVG+FAIAY+ DY+VSDKKIFGGTTP TVSN EWWEETDKKFQAWPRT GP
Sbjct: 1   MSTKYIVSALVGSFAIAYVCDYVVSDKKIFGGTTPRTVSNKEWWEETDKKFQAWPRTGGP 60

Query: 198 PVVMNPISRQNFIVKTR 215
           PVVMNPI+RQNFIVK++
Sbjct: 61  PVVMNPITRQNFIVKSQ 77

[Close]
BLAST of CmoCh07G013660 vs. NCBI nr
Match: gi|590636108|ref|XP_007028779.1| (Uncharacterized protein TCM_024708 [Theobroma cacao])

HSP 1 Score: 138.7 bits (348), Expect = 1.2e-29
Identity = 62/80 (77.50%), Postives = 72/80 (90.00%), Query Frame = 1 

Query: 138 MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGP 197
           MA+KY+  +++G+FAIAY+ D L++DKKIFGGTTPSTVSN EWWEETDKKFQAWPRTAGP
Sbjct: 1   MATKYIIPAVLGSFAIAYVCDQLIADKKIFGGTTPSTVSNKEWWEETDKKFQAWPRTAGP 60

Query: 198 PVVMNPISRQNFIVKTRPEA 218
           PVVMNPISRQNFIVK   E+
Sbjct: 61  PVVMNPISRQNFIVKAGSES 80

The following BLAST results are available for this feature:
BLAST of CmoCh07G013660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS28_MAIZE1.0e-2390.4840S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1[more]
RS281_ARATH1.7e-2392.0640S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1[more]
RS282_ARATH6.6e-2388.8940S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1[more]
RS28_ICTPU1.3e-1879.6640S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1[more]
RS28_DANRE1.3e-1879.6640S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1[more]
BLAST of CmoCh07G013660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYC7_CUCSA3.5e-3182.50Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166930 PE=4 SV=1[more]
A0A0D2NRU0_GOSRA3.0e-3081.25Uncharacterized protein OS=Gossypium raimondii GN=B456_002G230600 PE=4 SV=1[more]
A9P9Z0_POPTR5.1e-3079.22Stress-related ozone-induced family protein OS=Populus trichocarpa GN=POPTR_0006... [more]
A0A061EWV8_THECC8.7e-3077.50Uncharacterized protein OS=Theobroma cacao GN=TCM_024708 PE=4 SV=1[more]
B9S0H2_RICCO1.9e-2979.22ATOZI1, putative OS=Ricinus communis GN=RCOM_1354880 PE=4 SV=1[more]
BLAST of CmoCh07G013660 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G01170.15.4e-3175.32 Protein of unknown function (DUF1138)[more]
AT3G10090.19.8e-2592.06 Nucleic acid-binding, OB-fold-like protein[more]
AT5G03850.19.8e-2592.06 Nucleic acid-binding, OB-fold-like protein[more]
AT4G00860.11.7e-2461.33 Protein of unknown function (DUF1138)[more]
AT5G64140.13.7e-2488.89 ribosomal protein S28[more]
BLAST of CmoCh07G013660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449463344|ref|XP_004149394.1|5.0e-3182.50PREDICTED: uncharacterized protein LOC101213065 [Cucumis sativus][more]
gi|659134221|ref|XP_008467091.1|5.0e-3184.42PREDICTED: uncharacterized protein LOC103504527 [Cucumis melo][more]
gi|823136581|ref|XP_012468054.1|4.3e-3081.25PREDICTED: uncharacterized protein LOC105786244 [Gossypium raimondii][more]
gi|566174546|ref|XP_002308950.2|7.3e-3079.22stress-related ozone-induced family protein [Populus trichocarpa][more]
gi|590636108|ref|XP_007028779.1|1.2e-2977.50Uncharacterized protein TCM_024708 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000289Ribosomal_S28e
IPR009515DUF1138
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0008150 biological_process
biological_process GO:0009435 NAD biosynthetic process
biological_process GO:0006769 nicotinamide metabolic process
biological_process GO:0019357 nicotinate nucleotide biosynthetic process
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0000309 nicotinamide-nucleotide adenylyltransferase activity
molecular_function GO:0004515 nicotinate-nucleotide adenylyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G013660.1CmoCh07G013660.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000289Ribosomal protein S28ePRODOMPD005541coord: 1..46
score: 4.0
IPR000289Ribosomal protein S28eHAMAPMF_00292Ribosomal_S28ecoord: 1..65
score: 20
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 4..63
score: 6.7
IPR009515Protein of unknown function DUF1138PFAMPF06592DUF1138coord: 140..212
score: 1.0
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 1..63
score: 5.0
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 2..63
score: 1.63
NoneNo IPR availablePANTHERPTHR34267FAMILY NOT NAMEDcoord: 139..216
score: 5.7
NoneNo IPR availablePANTHERPTHR34267:SF1AT0ZI1 PROTEINcoord: 139..216
score: 5.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G013660CmaCh03G000690Cucurbita maxima (Rimu)cmacmoB674
CmoCh07G013660CmaCh07G013210Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G013660Cla002775Watermelon (97103) v1cmowmB829
CmoCh07G013660Csa4G166930Cucumber (Chinese Long) v2cmocuB857
CmoCh07G013660MELO3C023127Melon (DHL92) v3.5.1cmomeB789
CmoCh07G013660CSPI04G10640Wild cucumber (PI 183967)cmocpiB865
CmoCh07G013660Lsi01G018550Bottle gourd (USVL1VR-Ls)cmolsiB777
CmoCh07G013660Cp4.1LG10g11620Cucurbita pepo (Zucchini)cmocpeB803
CmoCh07G013660Cp4.1LG19g00620Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G013660CsaV3_4G011760Cucumber (Chinese Long) v3cmocucB1008
CmoCh07G013660Bhi03G001939Wax gourdcmowgoB1057
CmoCh07G013660CsGy4G010280Cucumber (Gy14) v2cgybcmoB546
CmoCh07G013660Carg22455Silver-seed gourdcarcmoB0275
CmoCh07G013660Carg12745Silver-seed gourdcarcmoB0395
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh07G013660CmoCh03G000660Cucurbita moschata (Rifu)cmocmoB461
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G013660Watermelon (97103) v2cmowmbB861
CmoCh07G013660Watermelon (97103) v2cmowmbB869
CmoCh07G013660Wax gourdcmowgoB1061
CmoCh07G013660Melon (DHL92) v3.5.1cmomeB794
CmoCh07G013660Watermelon (Charleston Gray)cmowcgB763
CmoCh07G013660Watermelon (Charleston Gray)cmowcgB771
CmoCh07G013660Watermelon (97103) v1cmowmB827
CmoCh07G013660Bottle gourd (USVL1VR-Ls)cmolsiB780
CmoCh07G013660Melon (DHL92) v3.6.1cmomedB898
CmoCh07G013660Melon (DHL92) v3.6.1cmomedB899