Carg12745 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12745
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	40S ribosomal protein S28
Location	Cucurbita_argyrosperma_scaffold_021 : 1138605 .. 1140447 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGGCCGCCGCTTCCTAAACTCTGCCCGTGAGATTTCGAATCCAAACTCTGCAAAATCCTTCGCCGCCGGTTTGTTTTCTTAATATCTCTGTCTTTTCGTTTCAATCTGTTCTGTTTTTCAATTATATTGGGTAAAAGAAGAAGAAGAAGGAGAAGAACTTGGCTTTTTATGTTTTTCCTTTTCCTTTTGTGATTCGTTATCATTATGAGTTTGCATTTAATGTATGGTTGCTTAGTTTGTTGTTGTTTTAAATATTGACAGTTGATTCTCGTTTTCTGGATGTTGGATTCGTTCTTTCTTTGGTACTGAAAGATCGTTGTCGTTATCCTATGTTAGAATTTGACTCGGAGGTTCTTAGTATTGAATCATTCATGAACTTGTAGATTGTATGTTGTTGCTGGTTATGAACGAGAGAGACATTTGGTCATGACTATGTTAGGCTTTTATCGTGCATGTCAACGTGAATATGTGCAATTTGGGGTTAAATTTGTACGAAATTATTGGAGAAAAGAGCGAAGCTAAGCTAAGGTCTCGGTGAAACTTCCTTAGAAATCTCAGGAAAGAGTTGGAAAGTTACTAGATTAGGTTTTTGCCTGCATCAGGTTAATTTTGAAACATTGTTTAACTGTTCATAGAATGAAGAAGAAATCTCAAGTTTTGATATTGTAGACTACAAATTTGATGAACTTTGATATAATATATGAAAAAACAATATTATTCATTGAAATCATGAGAATTGTGATTGAGAGGGGAAGTCATGACGCCGTAGAGGTAATAGGATCTTCTTAAATGACTCCAAATGAAATTTATAAAAAGCGATTATAAATATCGTTCAGAATTGCCTTTTAGGCATTCAGCATTCTGACATTAAATCTTTGTTTCTCTTTGAATAAAAGTTACTTGGTAGCTACATAGTAGAATTACTCCTGCAGTTTAGGAACGTACCGTTATAACTAAGAATTTGAGAAGGTTTCTCTCAACACTTTGATTTCATTTAACCATTTACCTATACAAAATGTACACCAGTTGGGTAAAGGGATATTGAGGCCTCACTTTCCAAGAACGTCGTCCCTCATTCATATGGAGAATTTGAATCCTTTCAGAAATTTGTGCCCCAAGATGGCCCTCATAGGAGTTGTCATGGGTGGCAATGAGAATGTCAATAAGGATTTGCAGTAAAGGGCACCTCCTAGAATATCTCTGATTAATGTTAAGGCACTGCTGGGCGATGATGCTTATTTTCCATCTATGATTTTCCACTGAAGTTTAATCTCAGAGCATATGAATTTTGTTCTCGGATTATATGGCAATGTACTTCTTGAAATTGATTTGAATTTTATGATTTAAGCATTTGAGAACCATCCTTCTGGCATGCGTTTGGACAAAATGCACACTTTGTTGGTTCCTTCCGGTGTAGCTTTTAAGAAAGTTCTATGTGGCTTGCTGTTTTTGTTGGGTTTTCTTCACATTCTTTTTTTTTTCAACCTCATCCATGGCAGTTGCTACATGTAATCTGCAAAAGATCTGTTCATAGATGGTATAAAGTTATAAACTGAAAACAACATCATATCTCCTTTATTGATCGTTGAAATGCCTGTAATTTCCAGGTTCCTCTCCAATCTCATCACCTCTATTCATTTAAGAAATGGAATCCCAAATCAAACACGCTGTGGTGGTCAAAGTAATGGGTAGAACTGGATCAAGAGGGCAAGTGACGCAAGTGAGAGTTAAGTTTCTCGACGATCAGAATCGATACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACTCTACTAGAGTCTGAGAGAGAAGCCAGGAGGTTGCGT

mRNA sequence

ATTTGGCCGCCGCTTCCTAAACTCTGCCCGTGAGATTTCGAATCCAAACTCTGCAAAATCCTTCGCCGCCGAAATGGAATCCCAAATCAAACACGCTGTGGTGGTCAAAGTAATGGGTAGAACTGGATCAAGAGGGCAAGTGACGCAAGTGAGAGTTAAGTTTCTCGACGATCAGAATCGATACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACTCTACTAGAGTCTGAGAGAGAAGCCAGGAGGTTGCGT

Coding sequence (CDS)

ATGGAATCCCAAATCAAACACGCTGTGGTGGTCAAAGTAATGGGTAGAACTGGATCAAGAGGGCAAGTGACGCAAGTGAGAGTTAAGTTTCTCGACGATCAGAATCGATACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACTCTACTAGAGTCTGAGAGAGAAGCCAGGAGGTTGCGT

Protein sequence

MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Homology

[Close]

BLAST of Carg12745 vs. NCBI nr
Match: XP_004138229.1 (PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_008453374.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_008460765.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_011648782.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_011653430.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_016901435.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_016902595.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_022152253.1 40S ribosomal protein S28-1 [Momordica charantia] >XP_022159219.1 40S ribosomal protein S28-1 [Momordica charantia] >XP_022933469.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022924912.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022931965.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022932895.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_023007264.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022987319.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022966097.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022966510.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022967935.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022967936.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_023529556.1 40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo] >XP_023516641.1 40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo] >KGN63802.1 hypothetical protein Csa_1G021920 [Cucumis sativus] >KGN63803.1 hypothetical protein Csa_1G021930 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Carg12745 vs. NCBI nr
Match: XP_022134697.1 (40S ribosomal protein S28-1-like [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 56  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 115

Query: 61  ARRLR 66
           ARRLR
Sbjct: 116 ARRLR 120

[Close]

BLAST of Carg12745 vs. NCBI nr
Match: XP_022922061.1 (40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 45  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 104

Query: 61  ARRLR 66
           ARRLR
Sbjct: 105 ARRLR 109

[Close]

BLAST of Carg12745 vs. NCBI nr
Match: XP_022922062.1 (40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 42  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 101

Query: 61  ARRLR 66
           ARRLR
Sbjct: 102 ARRLR 106

[Close]

BLAST of Carg12745 vs. NCBI nr
Match: PSS07843.1 (40S ribosomal protein [Actinidia chinensis var. chinensis] >PSS36278.1 40S ribosomal protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 126.7 bits (317), Expect = 2.8e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Carg12745 vs. TAIR10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 113.2 bits (282), Expect = 5.9e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Carg12745 vs. TAIR10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 113.2 bits (282), Expect = 5.9e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Carg12745 vs. TAIR10
Match: AT5G64140.1 (ribosomal protein S28)

HSP 1 Score: 111.3 bits (277), Expect = 2.2e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Carg12745 vs. Swiss-Prot
Match: sp|P46302|RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.2e-25
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Carg12745 vs. Swiss-Prot
Match: sp|Q9SR73|RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Carg12745 vs. Swiss-Prot
Match: sp|P34789|RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.0e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Carg12745 vs. Swiss-Prot
Match: sp|Q6PBK3|RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.9e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 65 R 66
          R
Sbjct: 69 R 69

[Close]

BLAST of Carg12745 vs. Swiss-Prot
Match: sp|Q90YP3|RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.9e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 65 R 66
          R
Sbjct: 69 R 69

[Close]

BLAST of Carg12745 vs. TrEMBL
Match: tr|A0A0A0LPR2|A0A0A0LPR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Carg12745 vs. TrEMBL
Match: tr|A0A1S3CD61|A0A1S3CD61_CUCME (40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Carg12745 vs. TrEMBL
Match: tr|A0A2R6S208|A0A2R6S208_ACTCH (40S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc00788 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Carg12745 vs. TrEMBL
Match: tr|A0A2R6R534|A0A2R6R534_ACTCH (40S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc10144 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MESQIKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Carg12745 vs. TrEMBL
Match: tr|A0A061EXX4|A0A061EXX4_THECC (Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao OX=3641 GN=TCM_025036 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

The following BLAST results are available for this feature:

BLAST of Carg12745 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138229.1	2.2e-26	100.00	PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus] >XP_008453374.1 PREDICT...	[more]
XP_022134697.1	2.2e-26	100.00	40S ribosomal protein S28-1-like [Momordica charantia]	[more]
XP_022922061.1	2.2e-26	100.00	40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata]	[more]
XP_022922062.1	2.2e-26	100.00	40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata]	[more]
PSS07843.1	2.8e-26	98.46	40S ribosomal protein [Actinidia chinensis var. chinensis] >PSS36278.1 40S ribos...	[more]

BLAST of Carg12745 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10090.1	5.9e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	5.9e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	2.2e-25	89.23	ribosomal protein S28	[more]

BLAST of Carg12745 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P46302\|RS28_MAIZE	6.2e-25	90.77	40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1	[more]
sp\|Q9SR73\|RS281_ARATH	1.1e-24	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1	[more]
sp\|P34789\|RS282_ARATH	4.0e-24	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1	[more]
sp\|Q6PBK3\|RS28_DANRE	7.9e-20	80.33	40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1	[more]
sp\|Q90YP3\|RS28_ICTPU	7.9e-20	80.33	40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1	[more]

BLAST of Carg12745 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LPR2\|A0A0A0LPR2_CUCSA	1.4e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1	[more]
tr\|A0A1S3CD61\|A0A1S3CD61_CUCME	1.4e-26	100.00	40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1	[more]
tr\|A0A2R6S208\|A0A2R6S208_ACTCH	1.9e-26	98.46	40S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_...	[more]
tr\|A0A2R6R534\|A0A2R6R534_ACTCH	2.5e-26	96.92	40S ribosomal protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_...	[more]
tr\|A0A061EXX4\|A0A061EXX4_THECC	3.2e-26	98.46	Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao OX=3641 GN=TCM_025...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold
IPR028626	Ribosomal_S28e_CS
IPR000289	Ribosomal_S28e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12745-RA	Carg12745-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 4..64 e-value: 3.0E-33 score: 113.5
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 1..65
IPR000289	Ribosomal protein S28e	PRODOM	PD005541		coord: 1..46 e-value: 7.0E-19 score: 225.0
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 1..65 score: 21.431
IPR000289	Ribosomal protein S28e	CDD	cd04457	S1_S28E	coord: 6..65 e-value: 5.02642E-29 score: 98.4763
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 1..65 e-value: 3.2E-36 score: 124.9
None	No IPR available	PANTHER	PTHR10769:SF6	40S RIBOSOMAL PROTEIN S28-1-RELATED	coord: 1..65
IPR028626	Ribosomal protein S28e conserved site	PROSITE	PS00961	RIBOSOMAL_S28E	coord: 56..64
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 2..65

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12745	Cla002777	Watermelon (97103) v1	carwmB0278
Carg12745	Csa4G166940	Cucumber (Chinese Long) v2	carcuB0313
Carg12745	MELO3C023127	Melon (DHL92) v3.5.1	carmeB0285
Carg12745	CSPI04G10660	Wild cucumber (PI 183967)	carcpiB0318
Carg12745	CmaCh07G013210	Cucurbita maxima (Rimu)	carcmaB0398
Carg12745	CmaCh03G000700	Cucurbita maxima (Rimu)	carcmaB0397
Carg12745	CmoCh07G013660	Cucurbita moschata (Rifu)	carcmoB0395
Carg12745	CmoCh03G000670	Cucurbita moschata (Rifu)	carcmoB0394
Carg12745	Lsi01G018550	Bottle gourd (USVL1VR-Ls)	carlsiB256
Carg12745	Cp4.1LG19g00640	Cucurbita pepo (Zucchini)	carcpeB0400
Carg12745	CsGy4G010290	Cucumber (Gy14) v2	carcgybB0299
Carg12745	CsaV3_4G011770	Cucumber (Chinese Long) v3	carcucB0317

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12745	Carg22456	Silver-seed gourd	carcarB230

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12745	Wax gourd	carwgoB0368
Carg12745	Wax gourd	carwgoB0371
Carg12745	Cucumber (Gy14) v1	carcgyB0332
Carg12745	Cucurbita pepo (Zucchini)	carcpeB0398
Carg12745	Bottle gourd (USVL1VR-Ls)	carlsiB259
Carg12745	Bottle gourd (USVL1VR-Ls)	carlsiB260
Carg12745	Melon (DHL92) v3.5.1	carmeB0288
Carg12745	Melon (DHL92) v3.6.1	carmedB0299
Carg12745	Watermelon (Charleston Gray)	carwcgB0276
Carg12745	Watermelon (97103) v2	carwmbB0292