CmaCh03G000700 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G000700
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	40S ribosomal protein S28
Location	Cma_Chr03 : 642603 .. 644642 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCCCAGATCAAACATGCTGTGGTGGTCAAAGTAATGGGCCGAACTGGATCGAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTCGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCTGTAAGGGAAGGTGACATTCTTACCCTTCTGGAGTCTGAGAGAGAAGCAAGGAGATTGCGTTGAGGACATCGTCCCGATCTTGGTTCTCTGTGTTGCAGCTACTGGTGATTTGATTATCCTTCTCATTACACACTCTAGATATAGAATGATGTCTCTTATCAATTTTCCCTCTCTTGGTTACTAGCATGTTATCTCAGTTCGATTCTAGGGTAGAATGTTTGAACTTTATTTGGATTGTCAAACAATTTTAGTATTCTAATTTAGGGTGTCTACGCAAAGGGCCTTGTTTATTTGGACTTTTCATTTGTATTAAATTACTGGTTGAAAAATTTGGATTTTTGAAGATTGTCTTTTTGTTTGAACTCATTTTGTTATGTGCGTAATTATGCTTGTTTGATGGTTAGGTAATTTCTTTTGTATAAATGTTTTTCATATCTCATTTCTTTTGTTTATTTTTTTTTTTTTATAAAAAAAATGTTTGAACATATTTTCAAGATCTTTGTGAATTAGGTCATTTAGTGGTTTGATTTGAAGTGTTTTATTGAATTTTTTGTAAACTTATTACTTGATTCATCCATGGGCTCAATGTAAACCCTAAACCCTATACATATCATAAAACAAATGCGATAATAATTCTATTTGAAACTTATAATAAAATATAAACATTTAATGTGGTAATAATTCATTTGGAACTTGTAATAAAATTAACCTTAGTCCTACCAACCAATGTGCAAAACTTATAAACCACAAATGTCCCGTACTAACCCATATGCTACTAAATGAAAATGCAACTAACCTATAGGCATGTGTCATGTGTCATCGCGGAGAGCTTGCCTTTACTTTTAAAATAGAGTAACAAATGGTTTGGGTATTTTAAGAAATACTTAGTAGTGTACTTAATTTTCCTACACATGGTCCACACGGATGAGTATAAACCCACCAATCAGTTCACACATCTCCTAGGCCCTTTTCTGATCGGACAAGTATTCTTTGGTAGCTGTTGATACCGAATGCCCGTGAGGAGTAGCGACCGTTGTATCCGTACTATCATGAAGGAATAGAGGTATCCCCGATGCATGAACACACAATAATGCATGAGGTCCCAACATTTTTCTATTTGCATTATCATTTAATGCAGCCCTGCTAGCATCTTCTTCATATCATATCATTTCTCATAACGTTTATCATTTATCATAACTTTCATGCATAAGCCGAGGTCGTATTTCATGCTAGTTCATCGTATTTGCATGTCAATCATATCATATCATTCATGTCACACATATCCTTCAGCTCAGTCGGCTTAAACAGCTCGACTCGACTTGCGGCTTAGTTAATTTTTTTAAACGAGATGCTCACAATTTCGGCTCATATACTAACCCTTTTAAAAAATATAAATTATACCAAAAACAGGAATTAATATACGTTCAATGAATATCTAAACATGGAAAAATGAAATTAAAAAGTACAAGAAATATAAAAACGTTCCAATAATAAAATGGTAAAAGTGGAATAAAAATAGTGAAAAAAACATCCAAAAATAGACGATCGTGAAATATTTGTAAAATTTTTCAATAATTTCTGCATTTTAAATGCCGATTGCTCCAGCTTCAATCGTCAGATTTTCTTTTCACATTTTCGGATTCAAAATTCTCGACTCATTCTCATCTCCTCATCACATCTACGGCACGCCCTGCTGCCGATCTCTCCTTCCCCGTCGATCTTCTTCCTATTTCCCAATCTCTCTGTCTCTCTGAGGTTCATCGCTTGGAAAATCGAATCAATCTGACGGTTCGTTGATTCAGCAGCTCAATCGGTACGTCTGTGTCTCTGTCTTTCTCTCAATCATGGCTTCTGTGCTCATTTTAGATGGAATTTCATGGCGGATGCTGTTCAAACGTGTCTTAG

mRNA sequence

ATGGAATCCCAGATCAAACATGCTGTGGTGGTCAAAGTAATGGGCCGAACTGGATCGAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTCGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCTCTTCAATCGTCAGATTTTCTTTTCACATTTTCGGATTCAAAATTCTCGACTCATTCTCATCTCCTCATCACATCTACGGCACGCCCTGCTGCCGATCTCTCCTTCCCCGTCGATCTTCTTCCTATTTCCCAATCTCTCTGTCTCTCTGAGGTTCATCGCTTGGAAAATCGAATCAATCTGACGATGGAATTTCATGGCGGATGCTGTTCAAACGTGTCTTAG

Coding sequence (CDS)

ATGGAATCCCAGATCAAACATGCTGTGGTGGTCAAAGTAATGGGCCGAACTGGATCGAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTCGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCTCTTCAATCGTCAGATTTTCTTTTCACATTTTCGGATTCAAAATTCTCGACTCATTCTCATCTCCTCATCACATCTACGGCACGCCCTGCTGCCGATCTCTCCTTCCCCGTCGATCTTCTTCCTATTTCCCAATCTCTCTGTCTCTCTGAGGTTCATCGCTTGGAAAATCGAATCAATCTGACGATGGAATTTCATGGCGGATGCTGTTCAAACGTGTCTTAG

Protein sequence

MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFLFTFSDSKFSTHSHLLITSTARPAADLSFPVDLLPISQSLCLSEVHRLENRINLTMEFHGGCCSNVS

Homology

[Close]

BLAST of CmaCh03G000700 vs. Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.3e-16
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGP+   D L
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDIL 52

[Close]

BLAST of CmaCh03G000700 vs. Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-15
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGP++  D L
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDIL 51

[Close]

BLAST of CmaCh03G000700 vs. Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-14
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGP++  D L
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVL 51

[Close]

BLAST of CmaCh03G000700 vs. Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-10
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1


Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGP++  D L
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVL 56

[Close]

BLAST of CmaCh03G000700 vs. Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-10
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1


Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGP++  D L
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVL 56

[Close]

BLAST of CmaCh03G000700 vs. TrEMBL
Match: A0A0A0LPR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-17
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP++  D L
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 52

[Close]

BLAST of CmaCh03G000700 vs. TrEMBL
Match: A0A061EXX4_THECC (Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.0e-17
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP++  D L
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 52

[Close]

BLAST of CmaCh03G000700 vs. TrEMBL
Match: Q2HWC2_MEDTR (40S ribosomal protein S28-1 OS=Medicago truncatula GN=MTR_6g013210 PE=2 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-16
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP++  D L
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDIL 52

[Close]

BLAST of CmaCh03G000700 vs. TrEMBL
Match: W9RZ99_9ROSA (Nicotinamide-nucleotide adenylyltransferase OS=Morus notabilis GN=L484_004025 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-16
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP++  D L
Sbjct: 211 MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDIL 262

[Close]

BLAST of CmaCh03G000700 vs. TrEMBL
Match: W9SEX7_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-16
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP++  D L
Sbjct: 91  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDIL 142

[Close]

BLAST of CmaCh03G000700 vs. TAIR10
Match: AT3G10090.1 (AT3G10090.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-16
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGP++  D L
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDIL 51

[Close]

BLAST of CmaCh03G000700 vs. TAIR10
Match: AT5G03850.1 (AT5G03850.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-16
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGP++  D L
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDIL 51

[Close]

BLAST of CmaCh03G000700 vs. TAIR10
Match: AT5G64140.1 (AT5G64140.1 ribosomal protein S28)

HSP 1 Score: 80.5 bits (197), Expect = 7.7e-16
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGP++  D L
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVL 51

[Close]

BLAST of CmaCh03G000700 vs. NCBI nr
Match: gi|449440915|ref|XP_004138229.1| (PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 3.8e-17
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP++  D L
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 52

[Close]

BLAST of CmaCh03G000700 vs. NCBI nr
Match: gi|590637502|ref|XP_007029134.1| (Nucleic acid-binding, OB-fold-like protein [Theobroma cacao])

HSP 1 Score: 95.1 bits (235), Expect = 8.6e-17
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP++  D L
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 52

[Close]

BLAST of CmaCh03G000700 vs. NCBI nr
Match: gi|703110452|ref|XP_010099593.1| (Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP++  D L
Sbjct: 211 MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDIL 262

[Close]

BLAST of CmaCh03G000700 vs. NCBI nr
Match: gi|502091073|ref|XP_004489433.1| (PREDICTED: 40S ribosomal protein S28 [Cicer arietinum])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP++  D L
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDIL 52

[Close]

BLAST of CmaCh03G000700 vs. NCBI nr
Match: gi|703132274|ref|XP_010105085.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP++  D L
Sbjct: 91  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDIL 142

The following BLAST results are available for this feature:

BLAST of CmaCh03G000700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS28_MAIZE	7.3e-16	80.77	40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1	[more]
RS281_ARATH	3.6e-15	80.77	40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1	[more]
RS282_ARATH	1.4e-14	78.85	40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1	[more]
RS28_ICTPU	2.7e-10	66.67	40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1	[more]
RS28_DANRE	2.7e-10	66.67	40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1	[more]

BLAST of CmaCh03G000700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPR2_CUCSA	2.7e-17	90.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1	[more]
A0A061EXX4_THECC	6.0e-17	88.46	Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3...	[more]
Q2HWC2_MEDTR	1.0e-16	88.46	40S ribosomal protein S28-1 OS=Medicago truncatula GN=MTR_6g013210 PE=2 SV=2	[more]
W9RZ99_9ROSA	1.0e-16	86.54	Nicotinamide-nucleotide adenylyltransferase OS=Morus notabilis GN=L484_004025 PE...	[more]
W9SEX7_9ROSA	1.0e-16	86.54	40S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1	[more]

BLAST of CmaCh03G000700 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10090.1	2.0e-16	80.77	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	2.0e-16	80.77	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	7.7e-16	78.85	ribosomal protein S28	[more]

BLAST of CmaCh03G000700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440915\|ref\|XP_004138229.1\|	3.8e-17	90.38	PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus]	[more]
gi\|590637502\|ref\|XP_007029134.1\|	8.6e-17	88.46	Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]	[more]
gi\|703110452\|ref\|XP_010099593.1\|	1.5e-16	86.54	Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis]	[more]
gi\|502091073\|ref\|XP_004489433.1\|	1.5e-16	88.46	PREDICTED: 40S ribosomal protein S28 [Cicer arietinum]	[more]
gi\|703132274\|ref\|XP_010105085.1\|	1.5e-16	86.54	40S ribosomal protein S28 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000289	Ribosomal_S28e
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016779	nucleotidyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G000700.1	CmaCh03G000700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PRODOM	PD005541		coord: 1..46 score: 3.0
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 1..45 score: 7.8
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 4..52 score: 3.7
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 1..52 score: 3.6
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 2..53 score: 1.03

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G000700	Csa4G166940	Cucumber (Chinese Long) v2	cmacuB666
CmaCh03G000700	CSPI04G10660	Wild cucumber (PI 183967)	cmacpiB674
CmaCh03G000700	CmoCh03G000670	Cucurbita moschata (Rifu)	cmacmoB654
CmaCh03G000700	Lsi01G018550	Bottle gourd (USVL1VR-Ls)	cmalsiB603
CmaCh03G000700	Cp4.1LG19g00640	Cucurbita pepo (Zucchini)	cmacpeB669
CmaCh03G000700	CsaV3_4G011770	Cucumber (Chinese Long) v3	cmacucB0794
CmaCh03G000700	Cla97C04G068480	Watermelon (97103) v2	cmawmbB694
CmaCh03G000700	CsGy4G010290	Cucumber (Gy14) v2	cgybcmaB531
CmaCh03G000700	Carg22456	Silver-seed gourd	carcmaB0266
CmaCh03G000700	Carg12745	Silver-seed gourd	carcmaB0397

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh03G000700	CmaCh07G013210	Cucurbita maxima (Rimu)	cmacmaB530

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G000700	Cucumber (Gy14) v2	cgybcmaB538
CmaCh03G000700	Melon (DHL92) v3.6.1	cmamedB701
CmaCh03G000700	Melon (DHL92) v3.6.1	cmamedB708
CmaCh03G000700	Cucumber (Chinese Long) v3	cmacucB0801
CmaCh03G000700	Watermelon (97103) v2	cmawmbB685
CmaCh03G000700	Watermelon (97103) v2	cmawmbB691
CmaCh03G000700	Wax gourd	cmawgoB0795
CmaCh03G000700	Wax gourd	cmawgoB0802
CmaCh03G000700	Wax gourd	cmawgoB0805
CmaCh03G000700	Cucurbita moschata (Rifu)	cmacmoB674
CmaCh03G000700	Wild cucumber (PI 183967)	cmacpiB681
CmaCh03G000700	Cucumber (Chinese Long) v2	cmacuB673
CmaCh03G000700	Melon (DHL92) v3.5.1	cmameB613
CmaCh03G000700	Melon (DHL92) v3.5.1	cmameB621
CmaCh03G000700	Watermelon (Charleston Gray)	cmawcgB586
CmaCh03G000700	Watermelon (Charleston Gray)	cmawcgB592
CmaCh03G000700	Watermelon (97103) v1	cmawmB635
CmaCh03G000700	Watermelon (97103) v1	cmawmB636
CmaCh03G000700	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G000700	Bottle gourd (USVL1VR-Ls)	cmalsiB598