CmaCh03G000700.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G000700.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	40S ribosomal protein S28
Location	Cma_Chr03 : 642603 .. 644642 (-)
Sequence length	357

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCCCAGATCAAACATGCTGTGGTGGTCAAAGTAATGGGCCGAACTGGATCGAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTCGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCTGTAAGGGAAGGTGACATTCTTACCCTTCTGGAGTCTGAGAGAGAAGCAAGGAGATTGCGTTGAGGACATCGTCCCGATCTTGGTTCTCTGTGTTGCAGCTACTGGTGATTTGATTATCCTTCTCATTACACACTCTAGATATAGAATGATGTCTCTTATCAATTTTCCCTCTCTTGGTTACTAGCATGTTATCTCAGTTCGATTCTAGGGTAGAATGTTTGAACTTTATTTGGATTGTCAAACAATTTTAGTATTCTAATTTAGGGTGTCTACGCAAAGGGCCTTGTTTATTTGGACTTTTCATTTGTATTAAATTACTGGTTGAAAAATTTGGATTTTTGAAGATTGTCTTTTTGTTTGAACTCATTTTGTTATGTGCGTAATTATGCTTGTTTGATGGTTAGGTAATTTCTTTTGTATAAATGTTTTTCATATCTCATTTCTTTTGTTTATTTTTTTTTTTTTATAAAAAAAATGTTTGAACATATTTTCAAGATCTTTGTGAATTAGGTCATTTAGTGGTTTGATTTGAAGTGTTTTATTGAATTTTTTGTAAACTTATTACTTGATTCATCCATGGGCTCAATGTAAACCCTAAACCCTATACATATCATAAAACAAATGCGATAATAATTCTATTTGAAACTTATAATAAAATATAAACATTTAATGTGGTAATAATTCATTTGGAACTTGTAATAAAATTAACCTTAGTCCTACCAACCAATGTGCAAAACTTATAAACCACAAATGTCCCGTACTAACCCATATGCTACTAAATGAAAATGCAACTAACCTATAGGCATGTGTCATGTGTCATCGCGGAGAGCTTGCCTTTACTTTTAAAATAGAGTAACAAATGGTTTGGGTATTTTAAGAAATACTTAGTAGTGTACTTAATTTTCCTACACATGGTCCACACGGATGAGTATAAACCCACCAATCAGTTCACACATCTCCTAGGCCCTTTTCTGATCGGACAAGTATTCTTTGGTAGCTGTTGATACCGAATGCCCGTGAGGAGTAGCGACCGTTGTATCCGTACTATCATGAAGGAATAGAGGTATCCCCGATGCATGAACACACAATAATGCATGAGGTCCCAACATTTTTCTATTTGCATTATCATTTAATGCAGCCCTGCTAGCATCTTCTTCATATCATATCATTTCTCATAACGTTTATCATTTATCATAACTTTCATGCATAAGCCGAGGTCGTATTTCATGCTAGTTCATCGTATTTGCATGTCAATCATATCATATCATTCATGTCACACATATCCTTCAGCTCAGTCGGCTTAAACAGCTCGACTCGACTTGCGGCTTAGTTAATTTTTTTAAACGAGATGCTCACAATTTCGGCTCATATACTAACCCTTTTAAAAAATATAAATTATACCAAAAACAGGAATTAATATACGTTCAATGAATATCTAAACATGGAAAAATGAAATTAAAAAGTACAAGAAATATAAAAACGTTCCAATAATAAAATGGTAAAAGTGGAATAAAAATAGTGAAAAAAACATCCAAAAATAGACGATCGTGAAATATTTGTAAAATTTTTCAATAATTTCTGCATTTTAAATGCCGATTGCTCCAGCTTCAATCGTCAGATTTTCTTTTCACATTTTCGGATTCAAAATTCTCGACTCATTCTCATCTCCTCATCACATCTACGGCACGCCCTGCTGCCGATCTCTCCTTCCCCGTCGATCTTCTTCCTATTTCCCAATCTCTCTGTCTCTCTGAGGTTCATCGCTTGGAAAATCGAATCAATCTGACGGTTCGTTGATTCAGCAGCTCAATCGGTACGTCTGTGTCTCTGTCTTTCTCTCAATCATGGCTTCTGTGCTCATTTTAGATGGAATTTCATGGCGGATGCTGTTCAAACGTGTCTTAG

mRNA sequence

ATGGAATCCCAGATCAAACATGCTGTGGTGGTCAAAGTAATGGGCCGAACTGGATCGAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTCGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCTCTTCAATCGTCAGATTTTCTTTTCACATTTTCGGATTCAAAATTCTCGACTCATTCTCATCTCCTCATCACATCTACGGCACGCCCTGCTGCCGATCTCTCCTTCCCCGTCGATCTTCTTCCTATTTCCCAATCTCTCTGTCTCTCTGAGGTTCATCGCTTGGAAAATCGAATCAATCTGACGATGGAATTTCATGGCGGATGCTGTTCAAACGTGTCTTAG

Coding sequence (CDS)

ATGGAATCCCAGATCAAACATGCTGTGGTGGTCAAAGTAATGGGCCGAACTGGATCGAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTCGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCTCTTCAATCGTCAGATTTTCTTTTCACATTTTCGGATTCAAAATTCTCGACTCATTCTCATCTCCTCATCACATCTACGGCACGCCCTGCTGCCGATCTCTCCTTCCCCGTCGATCTTCTTCCTATTTCCCAATCTCTCTGTCTCTCTGAGGTTCATCGCTTGGAAAATCGAATCAATCTGACGATGGAATTTCATGGCGGATGCTGTTCAAACGTGTCTTAG

Protein sequence

MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFLFTFSDSKFSTHSHLLITSTARPAADLSFPVDLLPISQSLCLSEVHRLENRINLTMEFHGGCCSNVS

Homology

[Close]

BLAST of CmaCh03G000700.1 vs. Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.3e-16
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGP+   D L
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDIL 52

[Close]

BLAST of CmaCh03G000700.1 vs. Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-15
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGP++  D L
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDIL 51

[Close]

BLAST of CmaCh03G000700.1 vs. Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-14
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGP++  D L
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVL 51

[Close]

BLAST of CmaCh03G000700.1 vs. Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-10
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1


Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGP++  D L
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVL 56

[Close]

BLAST of CmaCh03G000700.1 vs. Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-10
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1


Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGP++  D L
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVL 56

[Close]

BLAST of CmaCh03G000700.1 vs. TrEMBL
Match: A0A0A0LPR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-17
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP++  D L
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 52

[Close]

BLAST of CmaCh03G000700.1 vs. TrEMBL
Match: A0A061EXX4_THECC (Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.0e-17
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP++  D L
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 52

[Close]

BLAST of CmaCh03G000700.1 vs. TrEMBL
Match: Q2HWC2_MEDTR (40S ribosomal protein S28-1 OS=Medicago truncatula GN=MTR_6g013210 PE=2 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-16
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP++  D L
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDIL 52

[Close]

BLAST of CmaCh03G000700.1 vs. TrEMBL
Match: W9RZ99_9ROSA (Nicotinamide-nucleotide adenylyltransferase OS=Morus notabilis GN=L484_004025 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-16
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP++  D L
Sbjct: 211 MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDIL 262

[Close]

BLAST of CmaCh03G000700.1 vs. TrEMBL
Match: W9SEX7_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-16
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP++  D L
Sbjct: 91  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDIL 142

[Close]

BLAST of CmaCh03G000700.1 vs. TAIR10
Match: AT3G10090.1 (AT3G10090.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-16
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGP++  D L
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDIL 51

[Close]

BLAST of CmaCh03G000700.1 vs. TAIR10
Match: AT5G03850.1 (AT5G03850.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-16
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGP++  D L
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDIL 51

[Close]

BLAST of CmaCh03G000700.1 vs. TAIR10
Match: AT5G64140.1 (AT5G64140.1 ribosomal protein S28)

HSP 1 Score: 80.5 bits (197), Expect = 7.7e-16
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGP++  D L
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVL 51

[Close]

BLAST of CmaCh03G000700.1 vs. NCBI nr
Match: gi|449440915|ref|XP_004138229.1| (PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 3.8e-17
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP++  D L
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 52

[Close]

BLAST of CmaCh03G000700.1 vs. NCBI nr
Match: gi|590637502|ref|XP_007029134.1| (Nucleic acid-binding, OB-fold-like protein [Theobroma cacao])

HSP 1 Score: 95.1 bits (235), Expect = 8.6e-17
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP++  D L
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL 52

[Close]

BLAST of CmaCh03G000700.1 vs. NCBI nr
Match: gi|703110452|ref|XP_010099593.1| (Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP++  D L
Sbjct: 211 MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDIL 262

[Close]

BLAST of CmaCh03G000700.1 vs. NCBI nr
Match: gi|502091073|ref|XP_004489433.1| (PREDICTED: 40S ribosomal protein S28 [Cicer arietinum])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP++  D L
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDIL 52

[Close]

BLAST of CmaCh03G000700.1 vs. NCBI nr
Match: gi|703132274|ref|XP_010105085.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPLQSSDFL 53
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGP++  D L
Sbjct: 91  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDIL 142

The following BLAST results are available for this feature:

BLAST of CmaCh03G000700.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS28_MAIZE	7.3e-16	80.77	40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1	[more]
RS281_ARATH	3.6e-15	80.77	40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1	[more]
RS282_ARATH	1.4e-14	78.85	40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1	[more]
RS28_ICTPU	2.7e-10	66.67	40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1	[more]
RS28_DANRE	2.7e-10	66.67	40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1	[more]

BLAST of CmaCh03G000700.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPR2_CUCSA	2.7e-17	90.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1	[more]
A0A061EXX4_THECC	6.0e-17	88.46	Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3...	[more]
Q2HWC2_MEDTR	1.0e-16	88.46	40S ribosomal protein S28-1 OS=Medicago truncatula GN=MTR_6g013210 PE=2 SV=2	[more]
W9RZ99_9ROSA	1.0e-16	86.54	Nicotinamide-nucleotide adenylyltransferase OS=Morus notabilis GN=L484_004025 PE...	[more]
W9SEX7_9ROSA	1.0e-16	86.54	40S ribosomal protein S28 OS=Morus notabilis GN=L484_012438 PE=3 SV=1	[more]

BLAST of CmaCh03G000700.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10090.1	2.0e-16	80.77	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	2.0e-16	80.77	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	7.7e-16	78.85	ribosomal protein S28	[more]

BLAST of CmaCh03G000700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440915\|ref\|XP_004138229.1\|	3.8e-17	90.38	PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus]	[more]
gi\|590637502\|ref\|XP_007029134.1\|	8.6e-17	88.46	Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]	[more]
gi\|703110452\|ref\|XP_010099593.1\|	1.5e-16	86.54	Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis]	[more]
gi\|502091073\|ref\|XP_004489433.1\|	1.5e-16	88.46	PREDICTED: 40S ribosomal protein S28 [Cicer arietinum]	[more]
gi\|703132274\|ref\|XP_010105085.1\|	1.5e-16	86.54	40S ribosomal protein S28 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000289	Ribosomal_S28e
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh03G000700	CmaCh03G000700	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh03G000700.1	CmaCh03G000700.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G000700.1.CDS.3	CmaCh03G000700.1.CDS.3	CDS
CmaCh03G000700.1.CDS.2	CmaCh03G000700.1.CDS.2	CDS
CmaCh03G000700.1.CDS.1	CmaCh03G000700.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G000700.1.exon.3	CmaCh03G000700.1.exon.3	exon
CmaCh03G000700.1.exon.2	CmaCh03G000700.1.exon.2	exon
CmaCh03G000700.1.exon.1	CmaCh03G000700.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PRODOM	PD005541		coord: 1..46 score: 3.0
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 1..45 score: 7.8
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 4..52 score: 3.7
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 1..52 score: 3.6
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 2..53 score: 1.03