MELO3C023127 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023127
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	40S ribosomal protein S28
Location	chr8 : 15100444 .. 15103015 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGAAAAAGTAAAAGGCCCTAAAAGTTTGAGAGTAAAAAACCACAAAATCAAGCGTAGGCCGCCGCTTCATACACTCCATCGGTGAGATTTGGAATCCAAACTCTGCAAAACCCTTCGCCGCCGGTTCGTTCCCTTGAATCTATTTAGTTTTTTTGCTAGAAGATTACGAACTGCTACATGTTTTTATCAATATGAGTTCCCATCTATTATACGTTCGATTATCGTCTAGTGATTGTTGATTCCCGTTTTCTCGCTTCTGTATTTGTCTTTACTTTCTACGGAGATATCATTGCCGTTATCTGACGCTGGAGTTTGACACGGGAAATTTAAAAGAGAGTTTGATTGTGGTTTATTGAATAGCATTTCATTAGGGTTTTGTATCATAAGCATGAAGCGGATTGCTTGTTGTCGCGAGTTATGAGCGGACAAGGGAGAGAGGTTTTGAGTCTATGTTAGGATTTTTTCGTGAATATTGATGATACTCGAATATTTGGACATTGGGGATAAATTCAGTCTGAAATTATTGAAGCAAAGAAGGTGAAGGATTTTGGCTGCATCAGATCGTTTTAAAAATATTTTTACATTGTTTGCCTGGTCTTGTGAACTATGGATTTGATAAATTATATGAAAAGACATTAATCCTTTTCTAACAAGCTATGAGAATTGTGATTGCCAAACCAAATATAGGAAGCCATAGTAGGTTGCTCAGAATTGCCTTATTATTGCCATTCAACTTTCTGTCATTAAATCTTTGTTTCTCTTTCAATGAAAAGTACGTAATATCTATTCCATACAGCCGAGCAGCAGCCAAGCAAGGTAATGAACTAAAGAATTTGAGATTGCTTTTCTCAACACTTGGATTTCATAAGAGGAGCCCTGTTTTCCGACTACTTGTCCAAAATGCACACCAGTTGGATCTGTTAATTTTACATGTCTGTAGTAACTACACCTCCCATGACGTTCCACATTTGAATCTTTTTGGAGTGTTTTACTCCAAGATGACCTATAGGAGTCTTCATGGTTGGCTTTCCAATGGCTAATCAATATCTGGTTAAAGTTTAAGAGGAACTACTAGGAAATGATGATTACTTTTCCAATGAAGTTTAATCTAATTCGGCAGCATTTTACTTCTTATGCTTTGAGCATTAGACTCATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTATTCTAATGCAAAAGTCTTGTTTCCGTTTCAAAGAAAAATGTAATCTGACAGCATATGAATTTTGCTACTAATTTTCTGACAATGTAATCTCTAGAAGTTCGTCTGAAGATTACTGTTTTCGCTTTCTGGTTCAGAACTATTCTCCTGTCAAACATTTGAACTTGGACAAATGTGCCTTTTTTGTTTTTCCTCCTGTTTTATCTTTTCGGAAAGATGAATTGAATGACTATCTGTGTTTTTATTGGGAGTTCTCTTCACCTACTTTTTTTAAGCCTGATCAGTGGTAGATGCTGAAAGGACTTCTTTACCCTGCTTTCGTTGTTAATCACATCTTTTATTTTCCAGGTTTCTCTCAGATTCACTTAAGAAATGGAATCCCAGATCAAACACGCTGTGGTGGTAAAAGTAATGGGCCGAACGGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACCCTTCTGGAGTCCGAGAGAGAAGCCAGGAGGCTGCGTTGATGATAGTAACGTCGTTGCGGTTACTGATGATTATCCTTCTCATCATGCACTCTTAAGAATAGAATGATGGCTGTTATCAATTTTCCCTCTTATGAAAAATCTGATTTTGGATACTGTTATTTTGTCTCGTACCTTTGATTCTAAGATAGAATGTTTGAACTGGACGGATAGTTTATTTGGATTGTCAAACTATTTTGGTTCTTACAAGGAGTTCCTGTGAAAAATATATTGAAGTTTCGAAGAA

mRNA sequence

AAAAAAGAAAAAGTAAAAGGCCCTAAAAGTTTGAGAGTAAAAAACCACAAAATCAAGCGTAGGCCGCCGCTTCATACACTCCATCGGTGAGATTTGGAATCCAAACTCTGCAAAACCCTTCGCCGCCGGTTTCTCTCAGATTCACTTAAGAAATGGAATCCCAGATCAAACACGCTGTGGTGGTAAAAGTAATGGGCCGAACGGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACCCTTCTGGAGTCCGAGAGAGAAGCCAGGAGGCTGCGTTGATGATAGTAACGTCGTTGCGGTTACTGATGATTATCCTTCTCATCATGCACTCTTAAGAATAGAATGATGGCTGTTATCAATTTTCCCTCTTATGAAAAATCTGATTTTGGATACTGTTATTTTGTCTCGTACCTTTGATTCTAAGATAGAATGTTTGAACTGGACGGATAGTTTATTTGGATTGTCAAACTATTTTGGTTCTTACAAGGAGTTCCTGTGAAAAATATATTGAAGTTTCGAAGAA

Coding sequence (CDS)

ATGGAATCCCAGATCAAACACGCTGTGGTGGTAAAAGTAATGGGCCGAACGGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACCCTTCTGGAGTCCGAGAGAGAAGCCAGGAGGCTGCGTTGA

Homology

[Close]

BLAST of MELO3C023127 vs. Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.8e-25
Identity = 59/65 (90.77%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of MELO3C023127 vs. Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.8e-25
Identity = 60/65 (92.31%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of MELO3C023127 vs. Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-24
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of MELO3C023127 vs. Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.5e-20
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 1


Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 65 R 66
          R
Sbjct: 69 R 69

[Close]

BLAST of MELO3C023127 vs. Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.5e-20
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 1


Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 65 R 66
          R
Sbjct: 69 R 69

[Close]

BLAST of MELO3C023127 vs. TrEMBL
Match: A0A0A0LPR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.6e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of MELO3C023127 vs. TrEMBL
Match: A0A061EXX4_THECC (Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 7.9e-27
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of MELO3C023127 vs. TrEMBL
Match: Q2HWC2_MEDTR (40S ribosomal protein S28-1 OS=Medicago truncatula GN=MTR_6g013210 PE=2 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of MELO3C023127 vs. TrEMBL
Match: W9SDZ8_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_000157 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of MELO3C023127 vs. TrEMBL
Match: W9R147_9ROSA (40S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 22 MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 81

Query: 61 ARRLR 66
          ARRLR
Sbjct: 82 ARRLR 86

[Close]

BLAST of MELO3C023127 vs. TAIR10
Match: AT3G10090.1 (AT3G10090.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 114.4 bits (285), Expect = 2.7e-26
Identity = 60/65 (92.31%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of MELO3C023127 vs. TAIR10
Match: AT5G03850.1 (AT5G03850.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 114.4 bits (285), Expect = 2.7e-26
Identity = 60/65 (92.31%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of MELO3C023127 vs. TAIR10
Match: AT5G64140.1 (AT5G64140.1 ribosomal protein S28)

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-25
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF D  +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFTDS-DRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of MELO3C023127 vs. NCBI nr
Match: gi|449440915|ref|XP_004138229.1| (PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of MELO3C023127 vs. NCBI nr
Match: gi|590637502|ref|XP_007029134.1| (Nucleic acid-binding, OB-fold-like protein [Theobroma cacao])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of MELO3C023127 vs. NCBI nr
Match: gi|703080959|ref|XP_010091561.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of MELO3C023127 vs. NCBI nr
Match: gi|502091073|ref|XP_004489433.1| (PREDICTED: 40S ribosomal protein S28 [Cicer arietinum])

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of MELO3C023127 vs. NCBI nr
Match: gi|703132274|ref|XP_010105085.1| (40S ribosomal protein S28 [Morus notabilis])

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-26
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESERE
Sbjct: 91  MESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDILTLLESERE 150

Query: 61  ARRLR 66
           ARRLR
Sbjct: 151 ARRLR 155

The following BLAST results are available for this feature:

BLAST of MELO3C023127 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS28_MAIZE	2.8e-25	90.77	40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1	[more]
RS281_ARATH	4.8e-25	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=3 SV=1	[more]
RS282_ARATH	1.8e-24	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=3 SV=1	[more]
RS28_ICTPU	3.5e-20	80.33	40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1	[more]
RS28_DANRE	3.5e-20	80.33	40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1	[more]

BLAST of MELO3C023127 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPR2_CUCSA	3.6e-27	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G021920 PE=3 SV=1	[more]
A0A061EXX4_THECC	7.9e-27	98.46	Nucleic acid-binding, OB-fold-like protein OS=Theobroma cacao GN=TCM_025036 PE=3...	[more]
Q2HWC2_MEDTR	1.4e-26	98.46	40S ribosomal protein S28-1 OS=Medicago truncatula GN=MTR_6g013210 PE=2 SV=2	[more]
W9SDZ8_9ROSA	1.4e-26	96.92	40S ribosomal protein S28 OS=Morus notabilis GN=L484_000157 PE=3 SV=1	[more]
W9R147_9ROSA	1.4e-26	96.92	40S ribosomal protein S28 OS=Morus notabilis GN=L484_006775 PE=3 SV=1	[more]

BLAST of MELO3C023127 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10090.1	2.7e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	2.7e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	1.0e-25	89.23	ribosomal protein S28	[more]

BLAST of MELO3C023127 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440915\|ref\|XP_004138229.1\|	5.1e-27	100.00	PREDICTED: 40S ribosomal protein S28-1 [Cucumis sativus]	[more]
gi\|590637502\|ref\|XP_007029134.1\|	1.1e-26	98.46	Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]	[more]
gi\|703080959\|ref\|XP_010091561.1\|	1.9e-26	96.92	40S ribosomal protein S28 [Morus notabilis]	[more]
gi\|502091073\|ref\|XP_004489433.1\|	1.9e-26	98.46	PREDICTED: 40S ribosomal protein S28 [Cicer arietinum]	[more]
gi\|703132274\|ref\|XP_010105085.1\|	1.9e-26	96.92	40S ribosomal protein S28 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0009435	NAD biosynthetic process
biological_process	GO:0006769	nicotinamide metabolic process
biological_process	GO:0019357	nicotinate nucleotide biosynthetic process
biological_process	GO:0006407	rRNA export from nucleus
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000309	nicotinamide-nucleotide adenylyltransferase activity
molecular_function	GO:0004515	nicotinate-nucleotide adenylyltransferase activity
molecular_function	GO:0016779	nucleotidyltransferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47412	melon EST collection version 4.0	transcribed_cluster
MU53109	melon EST collection version 4.0	transcribed_cluster
MU53580	melon EST collection version 4.0	transcribed_cluster
MU54491	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023127T3	MELO3C023127T3	mRNA
MELO3C023127T2	MELO3C023127T2	mRNA
MELO3C023127T1	MELO3C023127T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU53580	MU53580	transcribed_cluster
MU47412	MU47412	transcribed_cluster
MU54491	MU54491	transcribed_cluster
MU53109	MU53109	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023127	Csa4G166940	Cucumber (Chinese Long) v2	cumeB331
MELO3C023127	Cla002777	Watermelon (97103) v1	mewmB589
MELO3C023127	ClCG04G000050	Watermelon (Charleston Gray)	mewcgB526
MELO3C023127	Cla97C04G068480	Watermelon (97103) v2	mewmbB534
MELO3C023127	CSPI04G10660	Wild cucumber (PI 183967)	cpimeB332
MELO3C023127	CmaCh07G013210	Cucurbita maxima (Rimu)	cmameB805
MELO3C023127	CmoCh07G013660	Cucurbita moschata (Rifu)	cmomeB789
MELO3C023127	CmoCh03G000670	Cucurbita moschata (Rifu)	cmomeB609
MELO3C023127	Lsi01G018550	Bottle gourd (USVL1VR-Ls)	lsimeB152
MELO3C023127	Cp4.1LG19g00640	Cucurbita pepo (Zucchini)	cpemeB451
MELO3C023127	CsGy4G010290	Cucumber (Gy14) v2	cgybmeB287
MELO3C023127	Carg22456	Silver-seed gourd	carmeB0196
MELO3C023127	Carg12745	Silver-seed gourd	carmeB0285
MELO3C023127	CsaV3_4G011770	Cucumber (Chinese Long) v3	cucmeB338

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023127	Silver-seed gourd	carmeB0288
MELO3C023127	Wax gourd	mewgoB646
MELO3C023127	Cucumber (Gy14) v1	cgymeB287
MELO3C023127	Cucurbita maxima (Rimu)	cmameB613
MELO3C023127	Cucurbita maxima (Rimu)	cmameB621
MELO3C023127	Cucurbita maxima (Rimu)	cmameB810
MELO3C023127	Cucurbita moschata (Rifu)	cmomeB601
MELO3C023127	Cucurbita moschata (Rifu)	cmomeB794
MELO3C023127	Cucurbita pepo (Zucchini)	cpemeB064
MELO3C023127	Cucurbita pepo (Zucchini)	cpemeB465