Csa4G022870 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G022870
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDNA-directed RNA polymerase III subunit RPC4; contains IPR007811 (RNA polymerase III Rpc4)
LocationChr4 : 2469590 .. 2474456 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTCCCTTTTCTTCTTTTTCACCATTTTTGTCCCGTTTCCCTTCACCATCATCTTCAACCTCGAGCTCATGAAGAATTCCGATCCATCTCCTCCACGCAGAAAGGTAGTAATCAAAATAACTTTTCAAATCACGCCTAAATAATATCCTAAACTTCTTCTTTAACTCGATTTAGATCTAAACCCTTTTCCTTCTGCAGGTCAAATTCGCTCCAAAATCCTCACAGCGCAAGAGGCCACCACCACCACCGGTTCAGAAAACGTACTCCTCTGAATCTCATCTTCTTCCACATTTTGAATTTGTAAAATCCTAATTTGTTTGGGGAATTGCTGCAGTGAAGATGAAGATGGTGAGGGTTATGTTGCTCAAACTCGCTACCTATTACGCCGTGCCAATGTAAGCTTCTTCTTCTTCTTCTTCTTCTTGTTATAATGGTTTTTCGAATTCTTTTGTGTGTTTTGGTTTTGATGTTTAGATGACTTTTGGTTTTCTGATCAGTTAGAATTTGGATGATTTGAAAAGATTTTCTTCTTCTACTTCTACTTCTGCTTTTCCGTTTGGTTCCCGAGGAAATTGTTTTTATGGAAATGAATCGTTTTCCGGACAACGTTCTTTCTTCTTTATTTCTCTTCCTGGAGAAGCGCTTGGGGTTTCTCTTTTCTTTTCGTTGATAAAAATTAAATTAAAGGTTAAAATATTTGGTTAGTCTTAGCCTAAAAAAAAAGTGAACTTTATTATTTTAGTAAAAAATCTTCCAATTTTAAAAAGTCTTAAAAGTACACTTAAATTTTTAAAATGAGGACAAAAATACAATGGAAATTTATTTTTTGAACTTTACAAAATTTCACAACTAAAAAAAGAAATTCCCTTATTTCATTAATATCGTCTTACTTCTCTTTTCTTCTTCATTTTCGTTAATTATTTGATACTTGTTTAACTAAAATAAATAAATAAAATCGCTAAGATATATAAACTATAGAAGATAAATAAAAGGGCTAATGATTTGAAGGCTTAAATATTATAACTAAATTATATGTTAGTTGGTGTGTATGTGTTAGTTAATATTCAAATACTTTTTTATTTGAATATTGATCGTATGTTAATAAAATATTAAATTAGTAAAAATTGTCATATATAACTTGCCAACTTTTATTTATAGACCATTTAAAATAATTTACAAACCTCAAATAACAAAACTTGGAGATCAACTAATCTCAAACCTTAATAATTAAAAAAACTTTTAATGAACTTGGAAAATGTTAGTAGTACTATCCTCCCCCCTAATTTGTCCGGTCACCAAATATATATTAATTTATTGTTTATTTTCTTTATGAACTTCACATATTTTGTTGCAATCATTAAAAGGAGCTCAGATAGAAAATTTCTTGTTATGACCAAACAGTAGTTATTTTTTGAAAAATAAGTTCTTATTTTTAGAAAACAATTTCACTAATGTTAGTTGCTTAAAAAAATTATTAATGTTAGTTTTGCATGTAACTATATAATTTAGCTTTTTTTTTTGTTTACAGGTTCAATCTGCAATAATTAAAAGATGATTATTTTCTCGTTATTTATGTAACTTACATTTCTCAACTCGTTATTCGTGTTAGTTTTCCTATAATAATTACCAACTCAACTCTGACTTTTATCACCAACCAAATGTTAAATCTAGATATTCAATCTTTTGTTAAACTCGCTATGTTTGATTATTTTTTGAAATGTTTGTGCTTTATTTTAGCTATTTGGTTTTCTAGATGAGTTTTTTTGTCCCTTTTTTTAGAATAAGATGAGTTTTTTGGCCTGCTATTGCTATATTTGAGCATTTTCTTTACGCTATTATGGATTATTTCTTTCTTGAATAGTAATTTTATCAAGGACTTATTAAGTTCAAAGCAAAATTTCATATCTTTTTAAACAATATTACAATAGTACACATCACAAATAGAACAATTTTCAACAATATCTTCATACGAAATAATTTTGTTTCATTTTTAGTGTTGTAGATTTATGTTCCTTGATCAAATACGATTTAATTCACCTTTAAAATATGTTAACATGTTTGAAAACATAGCCTATGGGTGGAACTATATCCACCGATGATGGCTAGGTAATGAAACAATTGTTTGATTTTTCACTTTCTTTACTCATTTGAAAAAGCATCGAGCATCCATTAGTGTTAGACAGTACAGACTACCTGTTAAGAGTTAAAACAGCAAAGGGGCAACAATTGACTCCTTAACCTTTGGCCTTAATATGTAACTGTAAGAACTGATTTGGTTTTCTTTCCACTTTGCAGGAGAATCTCGGAAAACGAGCGAACAAGGTCGAAAAAAAATGTATATGAAGTATTACTTTAAAATTTTGAATTAATATCAATAGCACTGTATTGGTTTCTTAATATAATTTGGACGGATTATCCATGTAAACGGGTTTGTTTTCATTCACAAGAGAGTGTGGGCTGCTACAATGTGGCTAATAATTTTGTAGAGTTGAATGTATGAAGGAAAAAATTGCAAAAGCACCTTGAACATTCGTATCTAATAATTATTAGGTGCATTCAGATTTTTAAATCTACCTCCAACGACTAAATAATTTGTCATCACGAGAAAAGAAAATCCCAAGTTCTTAGCAACGGAAGATGAAGTTTCCATTGTTGCCTTAACATGATCTCTATTTTCATTTGCATATCTGCAGCTTCAGTGCAAGTTGCATTCGGTCCTGGCGCTGAATCAACGTCATCTTCTATTAGAACATATGGAGTTCCCAAAGTAGAAAACGGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGAGGAGTTTGTCTTGCCAGTGGCTAGGGATGTTAACGAAGATGGAAAATATTTTGATAAAAAAACCAAAGATGGAATTACTGAATCCTCTAGTTCGGCTATGGAAACCAAGACCAAGAGGGATTACAAAGAACCTTGGGTAATCTCTTTTTCTCTCTCACTTTTGACACACACATAAAGATTAACTTCCTGATCTCATGATACTTTTTCAGGATTACCAAAATTCTTACTATCCTACTACACTCCCTTTACGGATGCCTTACTCTGGAGACCCTGGTATGTCTTTATTCTCTCCCAAAGAGGAATAGCAGAAGTGTCACATTGGCCACCTTTAGCTTTTGGTTTGTGAAAACTGATAAGTGATTTATGATATAAAATGATCTTAATGGCATCTTAGACATGTTTGTGAATGATTTTGAAAGAATTAAAATCACTTTTGTCATGTTCAAAGTTGCTATGAAACAATGTCTTTATTCATATGTTTGATTTCACACGTTGAACTGTGAATATCTATACAATCAAAATTGGTTTTGAAGCATTAGAACTATTTTATGGAGCTAATACTTAATCACGCAAAAGCTTATAATCAAATCTTGAAAACAAAAGCAGACTTTTAAGAGTCATTATATAAGGGATTGCTCATCTATGATGAAATGAACTTTTGACCTTAGTGGAGGATCGTTCTGACTTTGTTCTGTAGTTCAGCTAACTCTCCTGCCTCTTCTTGGATTTAGAACGACTTGATGAAGCCGAGTTTGGGCAGGATGTGATGAATAGAGAGTATGATGAGAACTCTGTAATACCTGCCTTGGATCTCGGGTTGCTGGTGGGTGAATAATTGGGAACTGTGGCTTATTTCATATATACATTGGTATTTCTTTATGCAGAATCTAGTTATAACTTATAATATGGTGGTGTTTTTTGATGCAGGATGAAAACACAGAGAGTACTAAGTACTTCTTTCAGCTTCCTGCACGTCTTCCTTTACCCAAACAATCGTCTACTGCAACGGGAAAGGAGAAAGTAGGAAATTCAAGATCTTCAAACAGCACGAGCTCGTCCGATCTCGACGATTTGAAGAAACTGTCTGCTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGACATTCTTTACGATGTGAGTAAAGTCGTTAACTTTCTACAACCAATATCAAGCATTGTTGAGTTCTTTTTTTTGCTGCCCGCCTGTAGTTTAGATGTCATATATTGTGATATTATTTGTGTTTGGAATGCATTTAATTTGTTGTGTGCCACCCCAAATGTGACCTATCGCAATCAGTGAACCGAGGTCTAAAGATGACCCCAGCCCTCAAAATCGAAGTTGTATTCATATTTATGTTATTTCCAATTTAGACCGTAGGGTTTAGAGGAGTGCACTATATAAACTCAAACTCAAAAGGCACTTGAATCAAGTTAGCAGATATACTGTTAAAAATCAAGTGAATGTCAATTTTTTATTGTTTACGTTTTCCGTTTATTTTTTAAGTAGATTTCTTAACAATTTGGTCCTGTTTTGCGGCTGTTGTAGGTTTCTTCTGGATCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACACTGAAGAGGGACAGTGCTGTGATCTCGGAGACATTGGCAACCGAGTTGTTGTAACACCGGATATTAGTTCCCTTTTAAATTCAGTGACTAATTTGAGATGATTGTGAAGAAAAAGCCTGTGGATAGAACAACCAACAAAAGAACACAACGAAGAAGGGCAAATCCTTACAATGTCAAAATGGGACTTTTACGTCTGGCTGTGTAGTGAAGGTGCTCATTTAGTAAGGAAGTTGGAGGGATGTCAAGTTCTTGTGTAATCTTTCTCCTTTGTTATTTCTATGGAAACAACAACGTATTCAGTATCTTTGATTTCTAGCTGTGGAATAGGTTTTTACCCGATAATGTTGATAGTTGTTGTAAAGGACTTTTTGTATATCGTCTTTCTTGATGGTGGTAATATTAGGATCCACACTTATCATGCA

mRNA sequence

ATGAAGAATTCCGATCCATCTCCTCCACGCAGAAAGGTCAAATTCGCTCCAAAATCCTCACAGCGCAAGAGGCCACCACCACCACCGGTTCAGAAAACTGAAGATGAAGATGGTGAGGGTTATGTTGCTCAAACTCGCTACCTATTACGCCGTGCCAATGAGAATCTCGGAAAACGAGCGAACAAGGTCGAAAAAAAATCTTCAGTGCAAGTTGCATTCGGTCCTGGCGCTGAATCAACGTCATCTTCTATTAGAACATATGGAGTTCCCAAAGTAGAAAACGGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGAGGAGTTTGTCTTGCCAGTGGCTAGGGATGTTAACGAAGATGGAAAATATTTTGATAAAAAAACCAAAGATGGAATTACTGAATCCTCTAGTTCGGCTATGGAAACCAAGACCAAGAGGGATTACAAAGAACCTTGGGATTACCAAAATTCTTACTATCCTACTACACTCCCTTTACGGATGCCTTACTCTGGAGACCCTGAACGACTTGATGAAGCCGAGTTTGGGCAGGATGTGATGAATAGAGAGTATGATGAGAACTCTGTAATACCTGCCTTGGATCTCGGGTTGCTGGATGAAAACACAGAGAGTACTAAGTACTTCTTTCAGCTTCCTGCACGTCTTCCTTTACCCAAACAATCGTCTACTGCAACGGGAAAGGAGAAAGTAGGAAATTCAAGATCTTCAAACAGCACGAGCTCGTCCGATCTCGACGATTTGAAGAAACTGTCTGCTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGACATTCTTTACGATGTTTCTTCTGGATCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACACTGAAGAGGGACAGTGCTGTGATCTCGGAGACATTGGCAACCGAGTTGTTGTAACACCGGATATTAGTTCCCTTTTAAATTCAGTGACTAATTTGAGATGA

Coding sequence (CDS)

ATGAAGAATTCCGATCCATCTCCTCCACGCAGAAAGGTCAAATTCGCTCCAAAATCCTCACAGCGCAAGAGGCCACCACCACCACCGGTTCAGAAAACTGAAGATGAAGATGGTGAGGGTTATGTTGCTCAAACTCGCTACCTATTACGCCGTGCCAATGAGAATCTCGGAAAACGAGCGAACAAGGTCGAAAAAAAATCTTCAGTGCAAGTTGCATTCGGTCCTGGCGCTGAATCAACGTCATCTTCTATTAGAACATATGGAGTTCCCAAAGTAGAAAACGGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGAGGAGTTTGTCTTGCCAGTGGCTAGGGATGTTAACGAAGATGGAAAATATTTTGATAAAAAAACCAAAGATGGAATTACTGAATCCTCTAGTTCGGCTATGGAAACCAAGACCAAGAGGGATTACAAAGAACCTTGGGATTACCAAAATTCTTACTATCCTACTACACTCCCTTTACGGATGCCTTACTCTGGAGACCCTGAACGACTTGATGAAGCCGAGTTTGGGCAGGATGTGATGAATAGAGAGTATGATGAGAACTCTGTAATACCTGCCTTGGATCTCGGGTTGCTGGATGAAAACACAGAGAGTACTAAGTACTTCTTTCAGCTTCCTGCACGTCTTCCTTTACCCAAACAATCGTCTACTGCAACGGGAAAGGAGAAAGTAGGAAATTCAAGATCTTCAAACAGCACGAGCTCGTCCGATCTCGACGATTTGAAGAAACTGTCTGCTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGACATTCTTTACGATGTTTCTTCTGGATCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACACTGAAGAGGGACAGTGCTGTGATCTCGGAGACATTGGCAACCGAGTTGTTGTAACACCGGATATTAGTTCCCTTTTAAATTCAGTGACTAATTTGAGATGA

Protein sequence

MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR*
Homology
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BLAST of Csa4G022870 vs. Swiss-Prot
Match: RPC4_MOUSE (DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus GN=Polr3d PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-08
Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 1 

Query: 216 FFQLPARLP--LPKQSSTATGKEKVGNS---------RSSNSTSSSDLDDLKKLSAGCMG 275
           F QLP  LP   P Q       E  G           +   +  + +   L  L+ G +G
Sbjct: 268 FLQLPDTLPGQPPTQDIKPVKTEVQGEDGQMVVIKQEKDREARLAENACTLADLTEGQVG 327

Query: 276 KLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDIGNRVVVTP 329
           KLLI KSG ++L LG +  DV+ G+ CSFLQ +V++   ++  G+   LG + +++V +P
Sbjct: 328 KLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGEMTVLGHVKHKLVCSP 387

[Close]
BLAST of Csa4G022870 vs. Swiss-Prot
Match: RPC4_HUMAN (DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens GN=POLR3D PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-08
Identity = 43/132 (32.58%), Postives = 64/132 (48.48%), Query Frame = 1 

Query: 211 ESTKYFFQLPARLP--LPKQSSTATGKEKVGNS---------RSSNSTSSSDLDDLKKLS 270
           E    F QLP  LP   P Q       E  G           +   +  + +   L  L+
Sbjct: 263 EEELLFLQLPDTLPGQPPTQDIKPIKTEVQGEDGQVVLIKQEKDREAKLAENACTLADLT 322

Query: 271 AGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDIGNR 329
            G +GKLLI KSG ++L LG +  DV+ G+ CSFLQ +V++   ++  G+   LG + ++
Sbjct: 323 EGQVGKLLIRKSGRVQLLLGKVTLDVTMGTACSFLQELVSVGLGDSRTGEMTVLGHVKHK 382

[Close]
BLAST of Csa4G022870 vs. Swiss-Prot
Match: RPC4_BOVIN (DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus GN=POLR3D PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-08
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = 1 

Query: 235 KEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFL 294
           +EK   +R + +T +     L  L+ G +GKLLI KSG ++L LG +  DV+ G+ CSFL
Sbjct: 303 QEKDREARLAENTCT-----LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFL 362

Query: 295 QHVVAI---NTEEGQCCDLGDIGNRVVVTPDISSLLN 329
           Q +V++   ++  G    LG I +++V +P+  SLL+
Sbjct: 363 QELVSVGLGDSRTGDMTVLGHIKHKLVCSPNFESLLD 394

[Close]
BLAST of Csa4G022870 vs. Swiss-Prot
Match: RPC4_YEAST (DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC53 PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-07
Identity = 35/116 (30.17%), Postives = 62/116 (53.45%), Query Frame = 1 

Query: 217 FQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDL---DDLKKLS----AGCMGKLLIY 276
           FQLP RLP  ++ +    KE +    S  S    ++   D    LS    AG +G + ++
Sbjct: 307 FQLPTRLPAFERPAVKEEKEDMETQASDPSKKKKNIKKKDTKDALSTRELAGKVGSIRVH 366

Query: 277 KSGAIKLRLGDILYDVSSGSNCSFLQHVVAIN-TEEGQCCD-LGDIGNRVVVTPDI 324
           KSG + +++G+++ D+  G+  +FLQ V+A++  ++    + LG +  ++VVTP I
Sbjct: 367 KSGKLSVKIGNVVMDIGKGAETTFLQDVIALSIADDASSAELLGRVDGKIVVTPQI 422

[Close]
BLAST of Csa4G022870 vs. Swiss-Prot
Match: RPC4_SCHPO (DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc53 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.0e-07
Identity = 78/346 (22.54%), Postives = 136/346 (39.31%), Query Frame = 1 

Query: 14  KFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAF 73
           KF PK   R++  P      E++D +  V     +  +      +   +++  +S   A 
Sbjct: 3   KFTPKFVPRRKNGP-----VEEKDVDERVKIEFDVESQKKWKASRPKPEIKLTASGPFAL 62

Query: 74  GPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDG 133
           GP A S+ +  R  G   V   + KN+     ++D+      A   +++G   D+   D 
Sbjct: 63  GPNASSSGTG-RPIGSVYVPPPNVKNE-----EKDDALSKLAASSGHDEGH--DEDMVDI 122

Query: 134 ITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFG--QDVMNRE 193
           +        E   +   K     ++   P      +P S D +    AE      V+N+E
Sbjct: 123 L-----KLRELNGQEQGKTDIGGKDLLVPIITDRMLPESNDEKLKHHAESAIHTTVINKE 182

Query: 194 YDENSVIPALDL-------GL-----LDENTESTKYFFQLPARLPL--------PKQSST 253
            +E   + ALDL       GL     ++++ +      Q P +LP         P   S+
Sbjct: 183 DEEQERV-ALDLQSLAQHLGLTEQEGMEDHFKDQMVLMQFPDKLPRFMGDADVDPVWPSS 242

Query: 254 ATGKEKVGNSRSSNSTSSSD--------LDDLKKLS-------AGCMGKLLIYKSGAIKL 313
              +E+ G           D        +DDL  L        AG +G L +++SG   L
Sbjct: 243 EVKEEEAGEKTDVEEKKDPDKHGRENGNIDDLTSLPYPAFHPPAGQIGVLRVHQSGKTTL 302

Query: 314 RLGDILYDVSSGSNCSFLQHVVAINTEEGQCCDLGDIGNRVVVTPD 323
            +G + + V SGS+C FLQ +  ++ +  +  +LG    R++V+PD
Sbjct: 303 EMGGVNFVVQSGSDCLFLQEIAVVDYDSKRIWNLGSFERRMIVSPD 329

[Close]
BLAST of Csa4G022870 vs. TrEMBL
Match: A0A0A0KZ61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022870 PE=4 SV=1)

HSP 1 Score: 671.0 bits (1730), Expect = 7.5e-190
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1 

Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60
           MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA
Sbjct: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120
           NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN
Sbjct: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120

Query: 121 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 180
           EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE
Sbjct: 121 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 180

Query: 181 AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN 240
           AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN
Sbjct: 181 AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN 240

Query: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI 300
           SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
Sbjct: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI 300

Query: 301 NTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 335
           NTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR
Sbjct: 301 NTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 334

[Close]
BLAST of Csa4G022870 vs. TrEMBL
Match: A0A067JSB7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26275 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 2.4e-79
Identity = 167/341 (48.97%), Postives = 221/341 (64.81%), Query Frame = 1 

Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDG---EGYVAQTRYLLRRANENLG 60
           M    PSP  RK KF PK+  +++P P  V K+E  D    E   AQ + L+R+ NENL 
Sbjct: 1   MDQEQPSPTPRKAKFTPKAPPQRKPIPT-VTKSEVNDSNNDEDEAAQAQKLMRKFNENLR 60

Query: 61  KRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENG--SRKNDIEPEVDEDEEFVLPV 120
           ++  KVEKKSSVQVAFGPGA + S+SIR YGVP  EN   S + DI+   ++D   V+  
Sbjct: 61  RKVPKVEKKSSVQVAFGPGA-APSTSIRKYGVPGCENAGSSSRLDIKDSDNDDRRIVVSS 120

Query: 121 ARDVNEDG--KYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSG 180
                EDG  KY  +         +   +  K K+DY+EPWDY ++YYPTTLPLR PYSG
Sbjct: 121 LSTAEEDGASKYHSE---------AIGVLPLKIKKDYREPWDYNHTYYPTTLPLRRPYSG 180

Query: 181 DPERLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTAT 240
           DPE L+E EFG+     EY+EN++ PA DLGLL+E+ +   +FFQLP++LPL K+S+   
Sbjct: 181 DPELLNEEEFGEAARKLEYNENTIKPASDLGLLEESDKERLFFFQLPSKLPLVKRSAITK 240

Query: 241 GKEKVGNSRSSNSTSSSDLD-DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCS 300
           GKEKV  S  S  TS+   +   + LS G MGK+L+Y+SGA+K++LGD LYDVS GS+C+
Sbjct: 241 GKEKVEGSTPSQGTSALKKESSFQGLSEGYMGKMLVYRSGAVKIKLGDTLYDVSPGSDCT 300

Query: 301 FLQHVVAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           F Q ++AI+    QCC +G +  R VVTPD+ SLLNSV NL
Sbjct: 301 FAQDLMAIDIASKQCCTIGKLRKRAVVTPDVDSLLNSVINL 330

[Close]
BLAST of Csa4G022870 vs. TrEMBL
Match: B9R9V4_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1500880 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 8.5e-77
Identity = 163/336 (48.51%), Postives = 217/336 (64.58%), Query Frame = 1 

Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRP--PPPPVQKTEDEDGEGYVAQTRYLLRRANENLGK 60
           M +  PSP +RKVKF PK+  ++RP    P  +    ++ E    Q + L+R+ NEN  +
Sbjct: 1   MDDEQPSPSQRKVKFTPKAPSQRRPRRTVPKTEVNGVDNNEDEAVQAQKLMRKFNENFRR 60

Query: 61  RANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARD 120
           +  +VEKKS+VQVAFGPGA S S+SIRT+GV K EN    + I+   D+D + V+     
Sbjct: 61  QGPRVEKKSTVQVAFGPGATS-STSIRTFGVSKGENPV-SSGIKDSTDDDGKIVISSLST 120

Query: 121 VNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERL 180
             ED +  +  ++D        A+  K K+DY+EPWDY  +YYPTTLPLR PYSGDP  L
Sbjct: 121 DKED-EIINCASED------IDALPLKIKKDYREPWDYDRTYYPTTLPLRRPYSGDPVLL 180

Query: 181 DEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKV 240
           DEAEFG+     EYDE+++ PA DL LL+E       FFQLPA+LPL K+S++A GKEK 
Sbjct: 181 DEAEFGEAARKLEYDESTMNPASDLELLEECDTEKMIFFQLPAKLPLVKRSASAKGKEKA 240

Query: 241 -GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHV 300
            G+  S    ++     L  LSAG MGK+L+Y+SGA+KL+LGD LYDVS GS+C F Q V
Sbjct: 241 EGSIPSQGKNAAKKESSLDGLSAGYMGKMLVYRSGAVKLKLGDTLYDVSQGSDCMFAQDV 300

Query: 301 VAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           +AINT    CC +G++  R VVTPD+ SLL+SV NL
Sbjct: 301 MAINTAAKHCCTIGELEKRAVVTPDVDSLLDSVVNL 327

[Close]
BLAST of Csa4G022870 vs. TrEMBL
Match: A0A061FZZ6_THECC (DNA binding protein, putative isoform 2 OS=Theobroma cacao GN=TCM_014896 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 8.0e-75
Identity = 161/337 (47.77%), Postives = 209/337 (62.02%), Query Frame = 1 

Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60
           M    PS  RRKV+FAPK+ Q  R     V K+E  D +G  AQ +YLL R NEN  ++ 
Sbjct: 1   MDQDGPSSGRRKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQAQYLLGRFNENQTRQR 60

Query: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120
            KVEKKSS Q++FGPGA S S+ +R YG  +     +  D      +D         D  
Sbjct: 61  PKVEKKSSAQISFGPGAPS-SNLLRAYGSQRGGTSGKSTDSRQRSPDDN--------DGQ 120

Query: 121 EDGKYFDKKTKDGITESSSSAMET---KTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPER 180
             G +     +D     SS A+E    K KR+Y+EPWDY ++YYP TLPLR PYSGDPE 
Sbjct: 121 IIGSFPSASKEDRTDICSSDAIEASAPKIKREYREPWDYHHTYYPITLPLRRPYSGDPEL 180

Query: 181 LDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEK 240
           LD+AEF  +   +EYDE ++ PA DLGLL+E  +   +FFQLPA LP+ K+ ++  GKEK
Sbjct: 181 LDQAEF-VEAARKEYDEKTINPASDLGLLEEGEKGKMFFFQLPANLPVIKRLASTKGKEK 240

Query: 241 VGNSRSSNSTSSSDLD-DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQH 300
             N  SS    +      L++L  G MGK+L+YKSGA+KL+LG+ LYDVS GS+C F Q 
Sbjct: 241 AENLGSSERFGALKKGCQLEELPGGFMGKMLVYKSGAVKLKLGETLYDVSPGSDCIFAQD 300

Query: 301 VVAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           V A+NT E  CC +G++G RVVVTPDISS+LNSV +L
Sbjct: 301 VAAVNTTEKHCCVIGELGKRVVVTPDISSVLNSVIDL 327

[Close]
BLAST of Csa4G022870 vs. TrEMBL
Match: A5AXE6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022611 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.6e-73
Identity = 165/357 (46.22%), Postives = 221/357 (61.90%), Query Frame = 1 

Query: 3   NSDPSPPRRKVKFAPKSSQRKRP----PPPPVQKTEDEDGEGYVAQTRYLLRRANENLGK 62
           N   S   RKV+FAPKS  R++P    P P V + EDE       + +YLLRR NE L +
Sbjct: 4   NESSSVSPRKVRFAPKSPPRRKPKTTAPQPVVAEEEDE-----AKRAQYLLRRVNEKLRR 63

Query: 63  RANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVD--EDEEFVLPVA 122
           +  KVEK SSVQV FGPGA + S +IRT+GV +  N  + + +E +V   + EE  +   
Sbjct: 64  QGPKVEKTSSVQVVFGPGAATPSDTIRTFGVHRDGNSDKSSGMELKVSTPDHEEIAVSSX 123

Query: 123 RDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPE 182
                D      +T     +++  + + + +  YKEPWDY +SYYPTTLPLR P+SGDPE
Sbjct: 124 STTKPD------ETNGXFADATDDSAQIRKR--YKEPWDYVHSYYPTTLPLRKPHSGDPE 183

Query: 183 RLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKE 242
            LDEAEFG+   N EYDE ++ PA +LGLL+E+ +   + FQLPA LPL KQS++A GKE
Sbjct: 184 ILDEAEFGEASTNLEYDEKTINPASELGLLEESEKGRMFLFQLPANLPLVKQSASAKGKE 243

Query: 243 KVGNS----------------RSSNSTSSSDLDD----LKKLSAGCMGKLLIYKSGAIKL 302
            VGNS                RSS S+ S    +    L+ L+ G  GK+L+YKSGAIKL
Sbjct: 244 IVGNSTSLEGIYASAKGKQVARSSLSSKSIGTSEHSCRLEDLAGGHXGKMLVYKSGAIKL 303

Query: 303 RLGDILYDVSSGSNCSFLQHVVAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           +LG+ILYDVS G +C+ +Q VVAINT +  C  LG++G RV+VTPD+ SLL+S+  L
Sbjct: 304 KLGEILYDVSPGLDCTCVQDVVAINTVDKHCYALGELGKRVIVTPDVDSLLDSMIAL 347

[Close]
BLAST of Csa4G022870 vs. TAIR10
Match: AT4G25180.1 (AT4G25180.1 RNA polymerase III RPC4)

HSP 1 Score: 191.8 bits (486), Expect = 6.7e-49
Identity = 125/334 (37.43%), Postives = 174/334 (52.10%), Query Frame = 1 

Query: 5   DPSPPRRKVKFAPKSSQ-RKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKV 64
           D    + K +F P   +  +R P  P   TE E+ E  +  +R   RR    +G+R    
Sbjct: 2   DSGEQKSKRRFQPNPPRPSRRLPIAPTSNTEAEEDEENIKASRQFDRRI---VGRRPKTE 61

Query: 65  EKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN--- 124
            K SS +VAF P     +  IR++GVPK E+    +D+ P        +LP    V    
Sbjct: 62  TKASSPEVAFQPSLSPLA--IRSFGVPK-EDDKPNSDVNPSSPAS---ILPAVSSVTAAQ 121

Query: 125 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 184
           EDG+                   T+T  DY EPWDY+NSYYPT LPLR P SGD E LD+
Sbjct: 122 EDGEEVHN-------------FVTRTGDDYVEPWDYRNSYYPTVLPLRKPNSGDIELLDQ 181

Query: 185 AEFGQDVMNREYDENSVIPALDLGLLD-ENTESTKYFFQLPARLPLPKQSSTATGKEKVG 244
            EFG+   NR+YDEN++  A +LGL   ++++   + F++P  LP+ KQ++ AT K    
Sbjct: 182 EEFGEVAKNRDYDENTINSAEELGLTSVQHSKKQMFIFKIPDCLPVVKQTTGATTK---- 241

Query: 245 NSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVA 304
             RS    SS   +  + L  G MGK+L+YKSGA+KL++GD L+DVS G        VVA
Sbjct: 242 --RSVREYSSGISNPFEGLPEGFMGKMLVYKSGAVKLKVGDALFDVSPGPGTKIPNDVVA 301

Query: 305 INTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           I+ +   C  +G     V VTPD+ SLLN  +++
Sbjct: 302 IDIKGRNCSRIGSSAKFVTVTPDVESLLNPASDM 307

[Close]
BLAST of Csa4G022870 vs. TAIR10
Match: AT5G09380.1 (AT5G09380.1 RNA polymerase III RPC4)

HSP 1 Score: 154.8 bits (390), Expect = 9.1e-38
Identity = 87/201 (43.28%), Postives = 122/201 (60.70%), Query Frame = 1 

Query: 134 ITESSSSAMETKTKR-DYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREY 193
           +  S+ +   T T+  +YKEPWDY  SYYP TLP+R PY+GDPE LD  EF Q      +
Sbjct: 82  LNRSNGAYGSTSTQEIEYKEPWDYY-SYYPITLPMRRPYAGDPEVLDVEEFMQA---GGH 141

Query: 194 DENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDL 253
            E+S+  A +LGL++++ E   +F +LP+ +PL   +ST T  E +    +         
Sbjct: 142 HEDSLNTAANLGLMEDSGEQKMFFMRLPS-VPL---ASTPT--ENLETRPNIKGPVEKKT 201

Query: 254 DDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAINTEEGQCCDLGD 313
            DLK L  G MGKLL+YKSGA+K++LG++LYDVS G    F Q V+ +NTE+  CC +GD
Sbjct: 202 VDLKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGD 261

Query: 314 IGNRVVVTPDISSLLNSVTNL 334
           +    V+TPDI S+L  + N+
Sbjct: 262 VYKHAVLTPDIDSILKDIENI 272

[Close]
BLAST of Csa4G022870 vs. NCBI nr
Match: gi|449458357|ref|XP_004146914.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis sativus])

HSP 1 Score: 671.0 bits (1730), Expect = 1.1e-189
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1 

Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60
           MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA
Sbjct: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120
           NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN
Sbjct: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120

Query: 121 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 180
           EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE
Sbjct: 121 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 180

Query: 181 AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN 240
           AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN
Sbjct: 181 AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN 240

Query: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI 300
           SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
Sbjct: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI 300

Query: 301 NTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 335
           NTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR
Sbjct: 301 NTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 334

[Close]
BLAST of Csa4G022870 vs. NCBI nr
Match: gi|659107882|ref|XP_008453902.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like [Cucumis melo])

HSP 1 Score: 642.5 bits (1656), Expect = 4.1e-181
Identity = 320/334 (95.81%), Postives = 325/334 (97.31%), Query Frame = 1 

Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60
           MKN D SPPRRKVKFAPKSSQR+RPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA
Sbjct: 1   MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120
           NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVA DVN
Sbjct: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMDVN 120

Query: 121 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 180
           EDGK+FDKKTKDGI ESSSSAM TKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD ERLDE
Sbjct: 121 EDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDE 180

Query: 181 AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN 240
           AEFGQD MNREYDENSVIPALDLGL DENTE+TKYFFQLPARLPLPKQSSTATGKEKVGN
Sbjct: 181 AEFGQDAMNREYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGN 240

Query: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI 300
           SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGS+CSFLQHVVAI
Sbjct: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI 300

Query: 301 NTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 335
           NTE+GQCCDLGDIG RVVVTPDISSLLNSVTNLR
Sbjct: 301 NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR 334

[Close]
BLAST of Csa4G022870 vs. NCBI nr
Match: gi|1009122078|ref|XP_015877810.1| (PREDICTED: uncharacterized protein LOC107414218 [Ziziphus jujuba])

HSP 1 Score: 317.4 bits (812), Expect = 3.0e-83
Identity = 167/337 (49.55%), Postives = 230/337 (68.25%), Query Frame = 1 

Query: 2   KNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRAN 61
           ++   S  R+K++FAPK   R++P PPP +K   ++      + + LLR+ NENL +R +
Sbjct: 3   QDGSSSTTRKKLRFAPKPPPRRKPRPPPPKKEAGDEDVDEAKEAKSLLRQFNENLTRRGS 62

Query: 62  KVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDED---EEFVLPVARD 121
           + EKKSSVQVAFGPGA + SSSIRT+GV K  N  + +D+EP+V E    E+ + P+  D
Sbjct: 63  RAEKKSSVQVAFGPGA-THSSSIRTFGVDKARNSYKSSDVEPKVSESSDSEKIISPLPLD 122

Query: 122 VNEDGKYFDKKTKDGITESSSSAMETKT-KRDYKEPWDYQNSYYPTTLPLRMPYSGDPER 181
                     K   G        + T+T K++YKEPWDY +SYYP TLPLR PYSGDPE 
Sbjct: 123 ----------KAGTGAALEEVRDLSTQTVKKEYKEPWDYNHSYYPITLPLRPPYSGDPEL 182

Query: 182 LDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEK 241
           L+EAEFG+   N+EYDE ++ PA +LGL++EN E   +FFQLPA LP+ KQS+++ GKEK
Sbjct: 183 LNEAEFGEAARNKEYDETAIHPASELGLMEENGERKMFFFQLPATLPMVKQSASSKGKEK 242

Query: 242 VGNSRSSNST-SSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQH 301
           VG+S SS S  ++S    L++L  GCMGK+L+YKSGA+KL+LGD L+DVS GS+    Q+
Sbjct: 243 VGSSTSSGSVGTTSKGSKLEELHGGCMGKMLVYKSGAVKLKLGDTLFDVSPGSDFQVSQN 302

Query: 302 VVAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           VVAINT E +C  LG++   VVV+PD+ S+LNS+ +L
Sbjct: 303 VVAINTAEKECNVLGELNKLVVVSPDVCSVLNSIIDL 328

[Close]
BLAST of Csa4G022870 vs. NCBI nr
Match: gi|643706312|gb|KDP22444.1| (hypothetical protein JCGZ_26275 [Jatropha curcas])

HSP 1 Score: 303.9 bits (777), Expect = 3.4e-79
Identity = 167/341 (48.97%), Postives = 221/341 (64.81%), Query Frame = 1 

Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDG---EGYVAQTRYLLRRANENLG 60
           M    PSP  RK KF PK+  +++P P  V K+E  D    E   AQ + L+R+ NENL 
Sbjct: 1   MDQEQPSPTPRKAKFTPKAPPQRKPIPT-VTKSEVNDSNNDEDEAAQAQKLMRKFNENLR 60

Query: 61  KRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENG--SRKNDIEPEVDEDEEFVLPV 120
           ++  KVEKKSSVQVAFGPGA + S+SIR YGVP  EN   S + DI+   ++D   V+  
Sbjct: 61  RKVPKVEKKSSVQVAFGPGA-APSTSIRKYGVPGCENAGSSSRLDIKDSDNDDRRIVVSS 120

Query: 121 ARDVNEDG--KYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSG 180
                EDG  KY  +         +   +  K K+DY+EPWDY ++YYPTTLPLR PYSG
Sbjct: 121 LSTAEEDGASKYHSE---------AIGVLPLKIKKDYREPWDYNHTYYPTTLPLRRPYSG 180

Query: 181 DPERLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTAT 240
           DPE L+E EFG+     EY+EN++ PA DLGLL+E+ +   +FFQLP++LPL K+S+   
Sbjct: 181 DPELLNEEEFGEAARKLEYNENTIKPASDLGLLEESDKERLFFFQLPSKLPLVKRSAITK 240

Query: 241 GKEKVGNSRSSNSTSSSDLD-DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCS 300
           GKEKV  S  S  TS+   +   + LS G MGK+L+Y+SGA+K++LGD LYDVS GS+C+
Sbjct: 241 GKEKVEGSTPSQGTSALKKESSFQGLSEGYMGKMLVYRSGAVKIKLGDTLYDVSPGSDCT 300

Query: 301 FLQHVVAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           F Q ++AI+    QCC +G +  R VVTPD+ SLLNSV NL
Sbjct: 301 FAQDLMAIDIASKQCCTIGKLRKRAVVTPDVDSLLNSVINL 330

[Close]
BLAST of Csa4G022870 vs. NCBI nr
Match: gi|802769842|ref|XP_012090466.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc4 isoform X1 [Jatropha curcas])

HSP 1 Score: 303.9 bits (777), Expect = 3.4e-79
Identity = 167/341 (48.97%), Postives = 221/341 (64.81%), Query Frame = 1 

Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDG---EGYVAQTRYLLRRANENLG 60
           M    PSP  RK KF PK+  +++P P  V K+E  D    E   AQ + L+R+ NENL 
Sbjct: 20  MDQEQPSPTPRKAKFTPKAPPQRKPIPT-VTKSEVNDSNNDEDEAAQAQKLMRKFNENLR 79

Query: 61  KRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENG--SRKNDIEPEVDEDEEFVLPV 120
           ++  KVEKKSSVQVAFGPGA + S+SIR YGVP  EN   S + DI+   ++D   V+  
Sbjct: 80  RKVPKVEKKSSVQVAFGPGA-APSTSIRKYGVPGCENAGSSSRLDIKDSDNDDRRIVVSS 139

Query: 121 ARDVNEDG--KYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSG 180
                EDG  KY  +         +   +  K K+DY+EPWDY ++YYPTTLPLR PYSG
Sbjct: 140 LSTAEEDGASKYHSE---------AIGVLPLKIKKDYREPWDYNHTYYPTTLPLRRPYSG 199

Query: 181 DPERLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTAT 240
           DPE L+E EFG+     EY+EN++ PA DLGLL+E+ +   +FFQLP++LPL K+S+   
Sbjct: 200 DPELLNEEEFGEAARKLEYNENTIKPASDLGLLEESDKERLFFFQLPSKLPLVKRSAITK 259

Query: 241 GKEKVGNSRSSNSTSSSDLD-DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCS 300
           GKEKV  S  S  TS+   +   + LS G MGK+L+Y+SGA+K++LGD LYDVS GS+C+
Sbjct: 260 GKEKVEGSTPSQGTSALKKESSFQGLSEGYMGKMLVYRSGAVKIKLGDTLYDVSPGSDCT 319

Query: 301 FLQHVVAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           F Q ++AI+    QCC +G +  R VVTPD+ SLLNSV NL
Sbjct: 320 FAQDLMAIDIASKQCCTIGKLRKRAVVTPDVDSLLNSVINL 349

The following BLAST results are available for this feature:
BLAST of Csa4G022870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPC4_MOUSE1.1e-0833.07DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus GN=Polr3d PE=2 SV=2[more]
RPC4_HUMAN1.9e-0832.58DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens GN=POLR3D PE=1 SV=2[more]
RPC4_BOVIN5.4e-0837.11DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus GN=POLR3D PE=2 SV=1[more]
RPC4_YEAST1.6e-0730.17DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain... [more]
RPC4_SCHPO6.0e-0722.54DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strai... [more]
BLAST of Csa4G022870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ61_CUCSA7.5e-190100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022870 PE=4 SV=1[more]
A0A067JSB7_JATCU2.4e-7948.97Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26275 PE=4 SV=1[more]
B9R9V4_RICCO8.5e-7748.51DNA binding protein, putative OS=Ricinus communis GN=RCOM_1500880 PE=4 SV=1[more]
A0A061FZZ6_THECC8.0e-7547.77DNA binding protein, putative isoform 2 OS=Theobroma cacao GN=TCM_014896 PE=4 SV... [more]
A5AXE6_VITVI2.6e-7346.22Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022611 PE=4 SV=1[more]
BLAST of Csa4G022870 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G25180.16.7e-4937.43 RNA polymerase III RPC4[more]
AT5G09380.19.1e-3843.28 RNA polymerase III RPC4[more]
BLAST of Csa4G022870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458357|ref|XP_004146914.1|1.1e-189100.00PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis sativus][more]
gi|659107882|ref|XP_008453902.1|4.1e-18195.81PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like [Cucumis melo][more]
gi|1009122078|ref|XP_015877810.1|3.0e-8349.55PREDICTED: uncharacterized protein LOC107414218 [Ziziphus jujuba][more]
gi|643706312|gb|KDP22444.1|3.4e-7948.97hypothetical protein JCGZ_26275 [Jatropha curcas][more]
gi|802769842|ref|XP_012090466.1|3.4e-7948.97PREDICTED: DNA-directed RNA polymerase III subunit rpc4 isoform X1 [Jatropha cur... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007811RPC4
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005666DNA-directed RNA polymerase III complex
Vocabulary: Biological Process
TermDefinition
GO:0006383transcription from RNA polymerase III promoter
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006383 transcription from RNA polymerase III promoter
cellular_component GO:0005666 DNA-directed RNA polymerase III complex
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU092613cucumber EST collection version 3.0transcribed_cluster
CU113991cucumber EST collection version 3.0transcribed_cluster
CU140724cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G022870.1Csa4G022870.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU113991CU113991transcribed_cluster
CU140724CU140724transcribed_cluster
CU092613CU092613transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007811DNA-directed RNA polymerase III subunit RPC4PANTHERPTHR13408DNA-DIRECTED RNA POLYMERASE IIIcoord: 132..334
score: 3.7E-110coord: 7..115
score: 3.7E
IPR007811DNA-directed RNA polymerase III subunit RPC4PFAMPF05132RNA_pol_Rpc4coord: 215..323
score: 1.0
NoneNo IPR availablePANTHERPTHR13408:SF3SUBFAMILY NOT NAMEDcoord: 132..334
score: 3.7E-110coord: 7..115
score: 3.7E