CsGy4G003920 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G003920
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	DNA-directed RNA polymerase III subunit rpc4-like
Location	Chr4 : 2496294 .. 2501314 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGCTGTGTGGCATTAAGTGAACATTTCGTCTTCGTTGGTATCTCATCATTTCTTCATTCCGCCTGGTCTAGGGTTCGATTCTTTCCCTTTTCTTCTTTTTCACCATTTTTGTCCCGTTTCCCTTCACCATCATCTTCAACCTCGAGCTCATGAAGAATTCCGATCCATCTCCTCCACGCAGAAAGGTAGTAATCAAAATAACTTTTCAAATCACGCCTAAATAATATCCTAAACTTCTTCTTTAACTCGATTTAGATCTAAACCCTTTTCCTTCTGCAGGTCAAATTCGCTCCAAAATCCTCACAGCGCAAGAGGCCACCACCACCACCGGTTCAGAAAACGTACTCCTCTGAATCTCATCTTCTTCCACATTTTGAATTTGTAAAATCCTAATTTGTTTGGGGAATTGCTGCAGTGAAGATGAAGATGGTGAGGGTTATGTTGCTCAAACTCGCTACCTATTACGCCGTGCCAATGTAAGCTTCTTCTTCTTCTTCTTCTTCTTGTTATAATGGTTTTTCGAATTCTTTTGTGTGTTTTGGTTTTGATGTTTAGATGACTTTTGGTTTTCTGATCAGTTAGAATTTGGATGATTTGAAAAGATTTTCTTCTTCTACTTCTACTTCTGCTTTTCCGTTTGGTTCCCGAGGAAATTGTTTTTATGGAAATGAATCGTTTTCCGGACAACGTTCTTTCTTCTTTATTTCTCTTCCTGGAGAAGCGCTTGGGGTTTCTCTTTTCTTTTCGTTGATAAAAATTAAATTAAAGGTTAAAATATTTGGTTAGTCTTAGCCTAAAAAAAAAGTGAACTTTATTATTTTAGTAAAAAATCTTCCAATTTTAAAAAGTCTTAAAAGTACACTTAAATTTTTAAAATGAGGACAAAAATACAATGGAAATTTATTTTTTGAACTTTACAAAATTTCACAACTAAAAAAAGAAATTCCCTTATTTCATTAATATCGTCTTACTTCTCTTTTCTTCTTCATTTTCGTTAATTATTTGATACTTGTTTAACTAAAATAAATAAATAAAATCGCTAAGATATATAAACTATAGAAGATAAATAAAAGGGCTAATGATTTGAAGGCTTAAATATTATAACTAAATTATATGTTAGTTGGTGTGTATGTGTTAGTTAATATTCAAATACTTTTTTATTTGAATATTGATCGTATGTTAATAAAATATTAAATTAGTAAAAATTGTCATATATAACTTGCCAACTTTTATTTATAGACCATTTAAAATAATTTACAAACCTCAAATAACAAAACTTGGAGATCAACTAATCTCAAACCTTAATAATTAAAAAAACTTTTAATGAACTTGGAAAATGTTAGTAGTACTATCCTCCCCCCTAATTTGTCCGGTCACCAAATATATATTAATTTATTGTTTATTTTCTTTATGAACTTCACATATTTTGTTGCAATCATTAAAAGGAGCTCAGATAGAAAATTTCTTGTTATGACCAAACAGTAGTTATTTTTTGAAAAATAAGTTCTTATTTTTAGAAAACAATTTCACTAATGTTAGTTGCTTAAAAAAATTATTAATGTTAGTTTTGCATGTAACTATATAATTTAGCTTTTTTTTTTGTTTACAGGTTCAATCTGCAATAATTAAAAGATGATTATTTTCTCGTTATTTATGTAACTTACATTTCTCAACTCGTTATTCGTGTTAGTTTTCCTATAATAATTACCAACTCAACTCTGACTTTTATCACCAACCAAATGTTAAATCTAGATATTCAATCTTTTGTTAAACTCGCTATGTTTGATTATTTTTTGAAATGTTTGTGCTTTATTTTAGCTATTTGGTTTTCTAGATGAGTTTTTTTGTCCCTTTTTTTAGAATAAGATGAGTTTTTTGGCCTGCTATTGCTATATTTGAGCATTTTCTTTACGCTATTATGGATTATTTCTTTCTTGAATAGTAATTTTATCAAGGACTTATTAAGTTCAAAGCAAAATTTCATATCTTTTTAAACAATATTACAATAGTACACATCACAAATAGAACAATTTTCAACAATATCTTCATACGAAATAATTTTGTTTCATTTTTAGTGTTGTAGATTTATGTTCCTTGATCAAATACGATTTAATTCACCTTTAAAATATGTTAACATGTTTGAAAACATAGCCTATGGGTGGAACTATATCCACCGATGATGGCTAGGTAATGAAACAATTGTTTGATTTTTCACTTTCTTTACTCATTTGAAAAAGCATCGAGCATCCATTAGTGTTAGACAGTACAGACTACCTGTTAAGAGTTAAAACAGCAAAGGGGCAACAATTGACTCCTTAACCTTTGGCCTTAATATGTAACTGTAAGAACTGATTTGGTTTTCTTTCCACTTTGCAGGAGAATCTCGGAAAACGAGCGAACAAGGTCGAAAAAAAATGTATATGAAGTATTACTTTAAAATTTTGAATTAATATCAATAGCACTGTATTGGTTTCTTAATATAATTTGGACGGATTATCCATGTAAACGGGTTTGTTTTCATTCACAAGAGAGTGTGGGCTGCTACAATGTGGCTAATAATTTTGTAGAGTTGAATGTATGAAGGAAAAAATTGCAAAAGCACCTTGAACATTCGTATCTAATAATTATTAGGTGCATTCAGATTTTTAAATCTACCTCCAACGACTAAATAATTTGTCATCACGAGAAAAGAAAATCCCAAGTTCTTAGCAACGGAAGATGAAGTTTCCATTGTTGCCTTAACATGATCTCTATTTTCATTTGCATATCTGCAGCTTCAGTGCAAGTTGCATTCGGTCCTGGCGCTGAATCAACGTCATCTTCTATTAGAACATATGGAGTTCCCAAAGTAGAAAACGGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGAGGAGTTTGTCTTGCCAGTGGCTAGGGATGTTAACGAAGATGGAAAATATTTTGATAAAAAAACCAAAGATGGAATTACTGAATCCTCTAGTTCGGCTATGGAAACCAAGACCAAGAGGGATTACAAAGAACCTTGGGTAATCTCTTTTTCTCTCTCACTTTTGACACACACATAAAGATTAACTTCCTGATCTCATGATACTTTTTCAGGATTACCAAAATTCTTACTATCCTACTACACTCCCTTTACGGATGCCTTACTCTGGAGACCCTGGTATGTCTTTATTCTCTCCCAAAGAGGAATAGCAGAAGTGTCACATTGGCCACCTTTAGCTTTTGGTTTGTGAAAACTGATAAGTGATTTATGATATAAAATGATCTTAATGGCATCTTAGACATGTTTGTGAATGATTTTGAAAGAATTAAAATCACTTTTGTCATGTTCAAAGTTGCTATGAAACAATGTCTTTATTCATATGTTTGATTTCACACGTTGAACTGTGAATATCTATACAATCAAAATTGGTTTTGAAGCATTAGAACTATTTTATGGAGCTAATACTTAATCACGCAAAAGCTTATAATCAAATCTTGAAAACAAAAGCAGACTTTTAAGAGTCATTATATAAGGGATTGCTCATCTATGATGAAATGAACTTTTGACCTTAGTGGAGGATCGTTCTGACTTTGTTCTGTAGTTCAGCTAACTCTCCTGCCTCTTCTTGGATTTAGAACGACTTGATGAAGCCGAGTTTGGGCAGGATGTGATGAATAGAGAGTATGATGAGAACTCTGTAATACCTGCCTTGGATCTCGGGTTGCTGGTGGGTGAATAATTGGGAACTGTGGCTTATTTCATATATACATTGGTATTTCTTTATGCAGAATCTAGTTATAACTTATAATATGGTGGTGTTTTTTGATGCAGGATGAAAACACAGAGAGTACTAAGTACTTCTTTCAGCTTCCTGCACGTCTTCCTTTACCCAAACAATCGTCTACTGCAACGGGAAAGGAGAAAGTAGGAAATTCAAGATCTTCAAACAGCACGAGCTCGTCCGATCTCGACGATTTGAAGAAACTGTCTGCTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGACATTCTTTACGATGTGAGTAAAGTCGTTAACTTTCTACAACCAATATCAAGCATTGTTGAGTTCTTTTTTTTGCTGCCCGCCTGTAGTTTAGATGTCATATATTGTGATATTATTTGTGTTTGGAATGCATTTAATTTGTTGTGTGCCACCCCAAATGTGACCTATCGCAATCAGTGAACCGAGGTCTAAAGATGACCCCAGCCCTCAAAATCGAAGTTGTATTCATATTTATGTTATTTCCAATTTAGACCGTAGGGTTTAGAGGAGTGCACTATATAAACTCAAACTCAAAAGGCACTTGAATCAAGTTAGCAGATATACTGTTAAAAATCAAGTGAATGTCAATTTTTTATTGTTTACGTTTTCCGTTTATTTTTTAAGTAGATTTCTTAACAATTTGGTCCTGTTTTGCGGCTGTTGTAGGTTTCTTCTGGATCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACACTGAAGAGGGACAGTGCTGTGATCTCGGAGACATTGGCAACCGAGTTGTTGTAACACCGGATATTAGTTCCCTTTTAAATTCAGTGACTAATTTGAGATGATTGTGAAGAAAAAGCCTGTGGATAGAACAACCAACAAAAGAACACAACGAAGAAGGGCAAATCCTTACAATGTCAAAATGGGACTTTTACGTCTGGCTGTGTAGTGAAGGTGCTCATTTAGTAAGGAAGTTGGAGGGATGTCAAGTTCTTGTGTAATCTTTCTCCTTTGTTATTTCTATGGAAACAACAACGTATTCAGTATCTTTGATTTCTAGCTGTGGAATAGGTTTTTACCCGATAATGTTGATAGTTGTTGTAAAAGACTTTTTGTATATCGTCTTTCTTGATGGTGGTAATATTAGGATCCACACTTATCATGCAAGTGAATATGTTTTCTAAAGAATAGAAAGAAATTTCAAAGTATTAAAATAACATAGAGTGAGTTTAGACGG

mRNA sequence

ATTTGCTGTGTGGCATTAAGTGAACATTTCGTCTTCGTTGGTATCTCATCATTTCTTCATTCCGCCTGGTCTAGGGTTCGATTCTTTCCCTTTTCTTCTTTTTCACCATTTTTGTCCCGTTTCCCTTCACCATCATCTTCAACCTCGAGCTCATGAAGAATTCCGATCCATCTCCTCCACGCAGAAAGGTCAAATTCGCTCCAAAATCCTCACAGCGCAAGAGGCCACCACCACCACCGGTTCAGAAAACTGAAGATGAAGATGGTGAGGGTTATGTTGCTCAAACTCGCTACCTATTACGCCGTGCCAATGAGAATCTCGGAAAACGAGCGAACAAGGTCGAAAAAAAATCTTCAGTGCAAGTTGCATTCGGTCCTGGCGCTGAATCAACGTCATCTTCTATTAGAACATATGGAGTTCCCAAAGTAGAAAACGGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGAGGAGTTTGTCTTGCCAGTGGCTAGGGATGTTAACGAAGATGGAAAATATTTTGATAAAAAAACCAAAGATGGAATTACTGAATCCTCTAGTTCGGCTATGGAAACCAAGACCAAGAGGGATTACAAAGAACCTTGGGATTACCAAAATTCTTACTATCCTACTACACTCCCTTTACGGATGCCTTACTCTGGAGACCCTGAACGACTTGATGAAGCCGAGTTTGGGCAGGATGTGATGAATAGAGAGTATGATGAGAACTCTGTAATACCTGCCTTGGATCTCGGGTTGCTGGATGAAAACACAGAGAGTACTAAGTACTTCTTTCAGCTTCCTGCACGTCTTCCTTTACCCAAACAATCGTCTACTGCAACGGGAAAGGAGAAAGTAGGAAATTCAAGATCTTCAAACAGCACGAGCTCGTCCGATCTCGACGATTTGAAGAAACTGTCTGCTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGACATTCTTTACGATGTTTCTTCTGGATCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACACTGAAGAGGGACAGTGCTGTGATCTCGGAGACATTGGCAACCGAGTTGTTGTAACACCGGATATTAGTTCCCTTTTAAATTCAGTGACTAATTTGAGATGATTGTGAAGAAAAAGCCTGTGGATAGAACAACCAACAAAAGAACACAACGAAGAAGGGCAAATCCTTACAATGTCAAAATGGGACTTTTACGTCTGGCTGTGTAGTGAAGGTGCTCATTTAGTAAGGAAGTTGGAGGGATGTCAAGTTCTTGTGTAATCTTTCTCCTTTGTTATTTCTATGGAAACAACAACGTATTCAGTATCTTTGATTTCTAGCTGTGGAATAGGTTTTTACCCGATAATGTTGATAGTTGTTGTAAAAGACTTTTTGTATATCGTCTTTCTTGATGGTGGTAATATTAGGATCCACACTTATCATGCAAGTGAATATGTTTTCTAAAGAATAGAAAGAAATTTCAAAGTATTAAAATAACATAGAGTGAGTTTAGACGG

Coding sequence (CDS)

ATGAAGAATTCCGATCCATCTCCTCCACGCAGAAAGGTCAAATTCGCTCCAAAATCCTCACAGCGCAAGAGGCCACCACCACCACCGGTTCAGAAAACTGAAGATGAAGATGGTGAGGGTTATGTTGCTCAAACTCGCTACCTATTACGCCGTGCCAATGAGAATCTCGGAAAACGAGCGAACAAGGTCGAAAAAAAATCTTCAGTGCAAGTTGCATTCGGTCCTGGCGCTGAATCAACGTCATCTTCTATTAGAACATATGGAGTTCCCAAAGTAGAAAACGGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGAGGAGTTTGTCTTGCCAGTGGCTAGGGATGTTAACGAAGATGGAAAATATTTTGATAAAAAAACCAAAGATGGAATTACTGAATCCTCTAGTTCGGCTATGGAAACCAAGACCAAGAGGGATTACAAAGAACCTTGGGATTACCAAAATTCTTACTATCCTACTACACTCCCTTTACGGATGCCTTACTCTGGAGACCCTGAACGACTTGATGAAGCCGAGTTTGGGCAGGATGTGATGAATAGAGAGTATGATGAGAACTCTGTAATACCTGCCTTGGATCTCGGGTTGCTGGATGAAAACACAGAGAGTACTAAGTACTTCTTTCAGCTTCCTGCACGTCTTCCTTTACCCAAACAATCGTCTACTGCAACGGGAAAGGAGAAAGTAGGAAATTCAAGATCTTCAAACAGCACGAGCTCGTCCGATCTCGACGATTTGAAGAAACTGTCTGCTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGACATTCTTTACGATGTTTCTTCTGGATCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACACTGAAGAGGGACAGTGCTGTGATCTCGGAGACATTGGCAACCGAGTTGTTGTAACACCGGATATTAGTTCCCTTTTAAATTCAGTGACTAATTTGAGATGA

Protein sequence

MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR

Homology

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BLAST of CsGy4G003920 vs. NCBI nr
Match: XP_004146914.1 (PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis sativus] >KGN53151.1 hypothetical protein Csa_4G022870 [Cucumis sativus])

HSP 1 Score: 609.8 bits (1571), Expect = 5.7e-171
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0


Query: 1   MKNSDPSPPRRKVKFAPXXXXXXXXXXXXXXXXXXXDGEGYVAQTRYLLRRANENLGKRA 60
           MKNSDPSPPRRKVKFAPXXXXXXXXXXXXXXXXXXXDGEGYVAQTRYLLRRANENLGKRA
Sbjct: 1   MKNSDPSPPRRKVKFAPXXXXXXXXXXXXXXXXXXXDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120
           NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN
Sbjct: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120

Query: 121 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 180
           EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE
Sbjct: 121 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 180

Query: 181 AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN 240
           AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN
Sbjct: 181 AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN 240

Query: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI 300
           SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
Sbjct: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI 300

Query: 301 NTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 335
           NTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR
Sbjct: 301 NTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 334

[Close]

BLAST of CsGy4G003920 vs. NCBI nr
Match: XP_008453902.1 (PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo])

HSP 1 Score: 560.1 bits (1442), Expect = 5.2e-156
Identity = 287/298 (96.31%), Postives = 291/298 (97.65%), Query Frame = 0


Query: 37  DGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGS 96
           DGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGS
Sbjct: 37  DGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGS 96

Query: 97  RKNDIEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDY 156
           RKNDIEPEVDEDEEFVLPVA DVNEDGK+FDKKTKDGI ESSSSAM TKTKRDYKEPWDY
Sbjct: 97  RKNDIEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDY 156

Query: 157 QNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYF 216
           QNSYYPTTLPLRMPYSGD ERLDEAEFGQD MNREYDENSVIPALDLGL DENTE+TKYF
Sbjct: 157 QNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPALDLGLQDENTENTKYF 216

Query: 217 FQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKL 276
           FQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKL
Sbjct: 217 FQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKL 276

Query: 277 RLGDILYDVSSGSNCSFLQHVVAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 335
           RLGDILYDVSSGS+CSFLQHVVAINTE+GQCCDLGDIG RVVVTPDISSLLNSVTNLR
Sbjct: 277 RLGDILYDVSSGSDCSFLQHVVAINTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR 334

[Close]

BLAST of CsGy4G003920 vs. NCBI nr
Match: XP_022922968.1 (DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita moschata])

HSP 1 Score: 425.2 bits (1092), Expect = 2.0e-115
Identity = 231/335 (68.96%), Postives = 251/335 (74.93%), Query Frame = 0


Query: 1   MKNSDPSPPRRKVKFAPXXXXXXXXXXXXXXXXXXXDGEGYVAQTRYLLRRANENLGKRA 60
           MKN DPSPPRRK+KFAP                   D  G VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNPDPSPPRRKIKFAP--KSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRG 60

Query: 61  NKVEKKSSVQVAFGPGAEST--SSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARD 120
           NKVEKKSSVQVAFGPGA S   SSSIRTYGVPK+ N SRK DIEPE  EDEE +LP   D
Sbjct: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMD 120

Query: 121 VNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERL 180
             E GK  ++KT+D           TK  +DYKEPWDY NSYYPTTLPLRMPYSGDPE L
Sbjct: 121 FEEYGKNLNEKTEDA----------TKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEML 180

Query: 181 DEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKV 240
           DEAEFGQDVM+REYDENS IPALDLGLLDEN+E+T+YFFQLPA LP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDVMDREYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKV 240

Query: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVV 300
           GN R               L  G MGKLLIYKSGA+KLRLGD LYDVSSG +CSFLQHVV
Sbjct: 241 GNLRXXXXXXXXXXXXXXNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV 300

Query: 301 AINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           AINT++GQCCDLG+IG RVVVTPDI SLLNS+T+L
Sbjct: 301 AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 323

[Close]

BLAST of CsGy4G003920 vs. NCBI nr
Match: XP_022141051.1 (DNA-directed RNA polymerase III subunit RPC4-like isoform X2 [Momordica charantia])

HSP 1 Score: 421.4 bits (1082), Expect = 2.9e-114
Identity = 218/293 (74.40%), Postives = 245/293 (83.62%), Query Frame = 0


Query: 43  AQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIE 102
           AQTRYLLRRA ENLGKR  KVEKK SVQVAFGPGA S SSSIRTYGVPKV N SRKN+IE
Sbjct: 42  AQTRYLLRRATENLGKRGTKVEKKPSVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIE 101

Query: 103 PEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITES---SSSAMETKTKRDYKEPWDYQNS 162
           PE+ +DEE +LP+  DV EDG  FD+K++DG  ES   +++ + TK K+DY+EPWDY +S
Sbjct: 102 PEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHS 161

Query: 163 YYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQL 222
           YYP TLPLR PYSG PE LD+AEFG D  +REYDEN+ IPALDL LL+E  E T YFFQL
Sbjct: 162 YYPNTLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQL 221

Query: 223 PARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLG 282
           PA LPLPKQSSTAT KEKVG+SRSSNS  +S+L DLKKL  G MGKLLIYKSGA+KLRLG
Sbjct: 222 PACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGYMGKLLIYKSGAVKLRLG 281

Query: 283 DILYDVSSGSNCSFLQHVVAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTN 333
           + LYDVSSGSNCSFLQHVVAINTEEG CCDLGD+G RVVVTPDISSLLN+VT+
Sbjct: 282 ETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD 334

[Close]

BLAST of CsGy4G003920 vs. NCBI nr
Match: XP_022985496.1 (DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita maxima])

HSP 1 Score: 420.6 bits (1080), Expect = 4.9e-114
Identity = 232/335 (69.25%), Postives = 253/335 (75.52%), Query Frame = 0


Query: 1   MKNSDPSPPRRKVKFAPXXXXXXXXXXXXXXXXXXXDGEGYVAQTRYLLRRANENLGKRA 60
           MKN DPSPPRRK+KFAP        XXX        DG   VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNPDPSPPRRKIKFAPKSTPRRRPXXXPKTEDEDVDGN--VAQTRYLLRRATENLGKRG 60

Query: 61  NKVEKKSSVQVAFGPGAEST--SSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARD 120
           NKVEKKSSVQVAFGPGA S   SSSIRTYGVPK+ N SRKNDIEPE  EDEE +LP+  D
Sbjct: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEELILPLPLD 120

Query: 121 VNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERL 180
             E GK  ++KT+D           TK  +DYKEPW+  NSYYPTTLPLRMP+SGDPE L
Sbjct: 121 FEEYGKNLNEKTEDA----------TKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEML 180

Query: 181 DEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKV 240
           DEAEFGQDVM+REYDENS IPALDLGLLDEN+E+T+YFFQLPARLP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDVMDREYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKV 240

Query: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVV 300
           GN                 L  G MGKLLIYKSGA+KLRLGD LYDVSSG +CSFLQHVV
Sbjct: 241 GNLXXXXXXXXXXXXXXXNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV 300

Query: 301 AINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           AINT++GQC DLGDIG RVVVTPDI SLLNS T+L
Sbjct: 301 AINTDKGQCFDLGDIGKRVVVTPDIGSLLNSTTDL 323

[Close]

BLAST of CsGy4G003920 vs. TAIR10
Match: AT4G25180.1 (RNA polymerase III RPC4)

HSP 1 Score: 168.3 bits (425), Expect = 8.0e-42
Identity = 122/334 (36.53%), Postives = 173/334 (51.80%), Query Frame = 0


Query: 6   PSPPR--RKVKFAPXXXXXXXXXXXXXXXXXXXDGEGYVAQTRYLLRRANENLGKRANKV 65
           P+PPR  R++  AP                   + E  +  +R   RR    +G+R    
Sbjct: 14  PNPPRPSRRLPIAP------------TSNTEAEEDEENIKASRQFDRRI---VGRRPKTE 73

Query: 66  EKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDV---N 125
            K SS +VAF P    +  +IR++GVPK E+    +D+ P        +LP    V    
Sbjct: 74  TKASSPEVAFQPSL--SPLAIRSFGVPK-EDDKPNSDVNP---SSPASILPAVSSVTAAQ 133

Query: 126 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 185
           EDG+                   T+T  DY EPWDY+NSYYPT LPLR P SGD E LD+
Sbjct: 134 EDGEEVHN-------------FVTRTGDDYVEPWDYRNSYYPTVLPLRKPNSGDIELLDQ 193

Query: 186 AEFGQDVMNREYDENSVIPALDLGLLD-ENTESTKYFFQLPARLPLPKQSSTATGKEKVG 245
            EFG+   NR+YDEN++  A +LGL   ++++   + F++P  LP+ KQ++ AT K    
Sbjct: 194 EEFGEVAKNRDYDENTINSAEELGLTSVQHSKKQMFIFKIPDCLPVVKQTTGATTK---- 253

Query: 246 NSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVA 305
             RS    SS   +  + L  G MGK+L+YKSGA+KL++GD L+DVS G        VVA
Sbjct: 254 --RSVREYSSGISNPFEGLPEGFMGKMLVYKSGAVKLKVGDALFDVSPGPGTKIPNDVVA 307

Query: 306 INTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           I+ +   C  +G     V VTPD+ SLLN  +++
Sbjct: 314 IDIKGRNCSRIGSSAKFVTVTPDVESLLNPASDM 307

[Close]

BLAST of CsGy4G003920 vs. TAIR10
Match: AT5G09380.1 (RNA polymerase III RPC4)

HSP 1 Score: 149.4 bits (376), Expect = 3.8e-36
Identity = 128/330 (38.79%), Postives = 175/330 (53.03%), Query Frame = 0


Query: 5   DPSPPRRKVKFAPXXXXXXXXXXXXXXXXXXXDGEGYVAQTRYLLRRANENLGKRANKVE 64
           +  PP RK+KFAP XXXXXXXXXXXXXXXX  +     AQ   LLRR NE   ++    +
Sbjct: 2   EQKPPVRKMKFAPKXXXXXXXXXXXXXXXXEDNSNS--AQASELLRRVNERSLRKPKADK 61

Query: 65  KKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVNEDGK 124
           K  + QVA+  G               V N +R N                        K
Sbjct: 62  KVPASQVAWLGG---------------VVNSTRSN------------------------K 121

Query: 125 YFDKKTKDGITESSSSAMETKTKR-DYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEF 184
           Y ++        S+ +   T T+  +YKEPWDY  SYYP TLP+R PY+GDPE LD  EF
Sbjct: 122 YLNR--------SNGAYGSTSTQEIEYKEPWDYY-SYYPITLPMRRPYAGDPEVLDVEEF 181

Query: 185 GQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRS 244
            Q      + E+S+  A +LGL++++ E   +F +LP+ +PL      +T  E +    +
Sbjct: 182 MQ---AGGHHEDSLNTAANLGLMEDSGEQKMFFMRLPS-VPL-----ASTPTENLETRPN 241

Query: 245 SNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAINTE 304
                     DLK L  G MGKLL+YKSGA+K++LG++LYDVS G    F Q V+ +NTE
Sbjct: 242 IKGPVEKKTVDLKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNTE 272

Query: 305 EGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           +  CC +GD+    V+TPDI S+L  + N+
Sbjct: 302 QKNCCLVGDVYKHAVLTPDIDSILKDIENI 272

[Close]

BLAST of CsGy4G003920 vs. Swiss-Prot
Match: sp|Q91WD1|RPC4_MOUSE (DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d PE=2 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 2.7e-07
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 216 FFQLPARLP--LPKQSSTATGKEKVG---------NSRSSNSTSSSDLDDLKKLSAGCMG 275
           F QLP  LP   P Q       E  G           +   +  + +   L  L+ G +G
Sbjct: 268 FLQLPDTLPGQPPTQDIKPVKTEVQGEDGQMVVIKQEKDREARLAENACTLADLTEGQVG 327

Query: 276 KLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDIGNRVVVTP 329
           KLLI KSG ++L LG +  DV+ G+ CSFLQ +V++   ++  G+   LG + +++V +P
Sbjct: 328 KLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGEMTVLGHVKHKLVCSP 387

[Close]

BLAST of CsGy4G003920 vs. Swiss-Prot
Match: sp|P05423|RPC4_HUMAN (DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 4.7e-07
Identity = 43/132 (32.58%), Postives = 66/132 (50.00%), Query Frame = 0


Query: 211 ESTKYFFQLPARLP--LPKQSSTATGKEKVG---------NSRSSNSTSSSDLDDLKKLS 270
           E    F QLP  LP   P Q       E  G           +   +  + +   L  L+
Sbjct: 263 EEELLFLQLPDTLPGQPPTQDIKPIKTEVQGEDGQVVLIKQEKDREAKLAENACTLADLT 322

Query: 271 AGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI---NTEEGQCCDLGDIGNR 329
            G +GKLLI KSG ++L LG +  DV+ G+ CSFLQ +V++   ++  G+   LG + ++
Sbjct: 323 EGQVGKLLIRKSGRVQLLLGKVTLDVTMGTACSFLQELVSVGLGDSRTGEMTVLGHVKHK 382

[Close]

BLAST of CsGy4G003920 vs. Swiss-Prot
Match: sp|Q5E9Z7|RPC4_BOVIN (DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.1e-07
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 235 KEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFL 294
           +EK   +R + +T +     L  L+ G +GKLLI KSG ++L LG +  DV+ G+ CSFL
Sbjct: 303 QEKDREARLAENTCT-----LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFL 362

Query: 295 QHVVAI---NTEEGQCCDLGDIGNRVVVTPDISSLLN 329
           Q +V++   ++  G    LG I +++V +P+  SLL+
Sbjct: 363 QELVSVGLGDSRTGDMTVLGHIKHKLVCSPNFESLLD 394

[Close]

BLAST of CsGy4G003920 vs. Swiss-Prot
Match: sp|P25441|RPC4_YEAST (DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC53 PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 5.1e-06
Identity = 35/116 (30.17%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 217 FQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDL---DDLKKLS----AGCMGKLLIY 276
           FQLP RLP  ++ +    KE +    S  S    ++   D    LS    AG +G + ++
Sbjct: 307 FQLPTRLPAFERPAVKEEKEDMETQASDPSKKKKNIKKKDTKDALSTRELAGKVGSIRVH 366

Query: 277 KSGAIKLRLGDILYDVSSGSNCSFLQHVVAIN-TEEGQCCD-LGDIGNRVVVTPDI 324
           KSG + +++G+++ D+  G+  +FLQ V+A++  ++    + LG +  ++VVTP I
Sbjct: 367 KSGKLSVKIGNVVMDIGKGAETTFLQDVIALSIADDASSAELLGRVDGKIVVTPQI 422

[Close]

BLAST of CsGy4G003920 vs. Swiss-Prot
Match: sp|Q8T1V7|RPC4_DICDI (DNA-directed RNA polymerase III subunit rpc4 OS=Dictyostelium discoideum OX=44689 GN=polr3d PE=3 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 4.4e-05
Identity = 28/77 (36.36%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 255 LKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAINTEEG-----QCCD 314
           +K++ +G +G L IYKSG   L++G + YD+SSG    FL+ V    T+ G      C  
Sbjct: 351 IKEMPSGKLGTLKIYKSGKSILKIGTVEYDISSGDKLKFLEEVQCFQTKGGPDNSPTCYT 410

Query: 315 LGDIGNRVVVTPDISSL 327
           LG     +V  P IS +
Sbjct: 411 LGIPSQHLVAAPIISQI 427

[Close]

BLAST of CsGy4G003920 vs. TrEMBL
Match: tr|A0A0A0KZ61|A0A0A0KZ61_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022870 PE=4 SV=1)

HSP 1 Score: 609.8 bits (1571), Expect = 3.8e-171
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0


Query: 1   MKNSDPSPPRRKVKFAPXXXXXXXXXXXXXXXXXXXDGEGYVAQTRYLLRRANENLGKRA 60
           MKNSDPSPPRRKVKFAPXXXXXXXXXXXXXXXXXXXDGEGYVAQTRYLLRRANENLGKRA
Sbjct: 1   MKNSDPSPPRRKVKFAPXXXXXXXXXXXXXXXXXXXDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120
           NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN
Sbjct: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120

Query: 121 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 180
           EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE
Sbjct: 121 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 180

Query: 181 AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN 240
           AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN
Sbjct: 181 AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN 240

Query: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI 300
           SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
Sbjct: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI 300

Query: 301 NTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 335
           NTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR
Sbjct: 301 NTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 334

[Close]

BLAST of CsGy4G003920 vs. TrEMBL
Match: tr|A0A1S3BYJ9|A0A1S3BYJ9_CUCME (DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo OX=3656 GN=LOC103494480 PE=4 SV=1)

HSP 1 Score: 560.1 bits (1442), Expect = 3.4e-156
Identity = 287/298 (96.31%), Postives = 291/298 (97.65%), Query Frame = 0


Query: 37  DGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGS 96
           DGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGS
Sbjct: 37  DGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGS 96

Query: 97  RKNDIEPEVDEDEEFVLPVARDVNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDY 156
           RKNDIEPEVDEDEEFVLPVA DVNEDGK+FDKKTKDGI ESSSSAM TKTKRDYKEPWDY
Sbjct: 97  RKNDIEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDY 156

Query: 157 QNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYF 216
           QNSYYPTTLPLRMPYSGD ERLDEAEFGQD MNREYDENSVIPALDLGL DENTE+TKYF
Sbjct: 157 QNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPALDLGLQDENTENTKYF 216

Query: 217 FQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKL 276
           FQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKL
Sbjct: 217 FQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKL 276

Query: 277 RLGDILYDVSSGSNCSFLQHVVAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 335
           RLGDILYDVSSGS+CSFLQHVVAINTE+GQCCDLGDIG RVVVTPDISSLLNSVTNLR
Sbjct: 277 RLGDILYDVSSGSDCSFLQHVVAINTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR 334

[Close]

BLAST of CsGy4G003920 vs. TrEMBL
Match: tr|A0A2P2JCM0|A0A2P2JCM0_RHIMU (DNA binding protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 2.0e-71
Identity = 162/340 (47.65%), Postives = 213/340 (62.65%), Query Frame = 0


Query: 1   MKNSDPSPPRRKVKFAPXXXXXXXXXXXXXXXXXXXD-GEGYVAQTRYLLRRANENLGKR 60
           M   +PS  RRKVKFAP                      E   AQ   L+ + +EN  + 
Sbjct: 1   MDGEEPSSGRRKVKFAPKVQSHRKPRSIPPKTEASSTINEDDAAQAEMLMSKFSENFRRH 60

Query: 61  ANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKV--ENGSRKNDIEPEVDEDEEFVLPVAR 120
             K EKKSSVQVAFGPGA   +SS+R YG+P+V    GS ++D++  +D D + V   + 
Sbjct: 61  VPKAEKKSSVQVAFGPGA---TSSLRKYGLPRVGDAGGSSRSDVKDSIDNDLKIVTSSS- 120

Query: 121 DVNEDGKYFDKKTKDGITESSSSAME---TKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD 180
                        KD IT   S A+E    K ++DY EPWDY ++YYPTTLPLR PYSGD
Sbjct: 121 ----------TANKDQITACPSDAIEEFPEKNQKDYIEPWDYNHTYYPTTLPLRRPYSGD 180

Query: 181 PERLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATG 240
           PE L+EAEFG+   N E+DEN++ PA DLGLLD+  +   + FQLPA+LPL K+S++A G
Sbjct: 181 PELLNEAEFGEAAKNLEHDENTINPASDLGLLDKGEKKKLFLFQLPAKLPLLKRSASAKG 240

Query: 241 KEKVGNSRSSNSTSSSDL-DDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSF 300
           KE+  +S  S S S+S +  DL +L+ G MGK+L+Y+SGA+KL+LG  LYDVSSGS+C F
Sbjct: 241 KERAESSTMSESNSASKMGSDLAELAEGYMGKMLVYRSGAVKLKLGSTLYDVSSGSDCIF 300

Query: 301 LQHVVAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
            Q V+AINT    CC +G++G R VV PD+ SLLNSV +L
Sbjct: 301 AQDVMAINTAAKHCCTIGELGKRAVVAPDVDSLLNSVIDL 326

[Close]

BLAST of CsGy4G003920 vs. TrEMBL
Match: tr|A0A067JSB7|A0A067JSB7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26275 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.9e-70
Identity = 160/340 (47.06%), Postives = 210/340 (61.76%), Query Frame = 0


Query: 1   MKNSDPSPPRRKVKFAP--XXXXXXXXXXXXXXXXXXXDGEGYVAQTRYLLRRANENLGK 60
           M    PSP  RK KF P                     + E   AQ + L+R+ NENL +
Sbjct: 1   MDQEQPSPTPRKAKFTPKAPPQRKPIPTVTKSEVNDSNNDEDEAAQAQKLMRKFNENLRR 60

Query: 61  RANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVEN--GSRKNDIEPEVDEDEEFVLPVA 120
           +  KVEKKSSVQVAFGPGA + S+SIR YGVP  EN   S + DI+   ++D   V+   
Sbjct: 61  KVPKVEKKSSVQVAFGPGA-APSTSIRKYGVPGCENAGSSSRLDIKDSDNDDRRIVVSSL 120

Query: 121 RDVNEDG--KYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD 180
               EDG  KY  +         +   +  K K+DY+EPWDY ++YYPTTLPLR PYSGD
Sbjct: 121 STAEEDGASKYHSE---------AIGVLPLKIKKDYREPWDYNHTYYPTTLPLRRPYSGD 180

Query: 181 PERLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATG 240
           PE L+E EFG+     EY+EN++ PA DLGLL+E+ +   +FFQLP++LPL K+S+   G
Sbjct: 181 PELLNEEEFGEAARKLEYNENTIKPASDLGLLEESDKERLFFFQLPSKLPLVKRSAITKG 240

Query: 241 KEKVGNSRSSNSTSSSDLD-DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSF 300
           KEKV  S  S  TS+   +   + LS G MGK+L+Y+SGA+K++LGD LYDVS GS+C+F
Sbjct: 241 KEKVEGSTPSQGTSALKKESSFQGLSEGYMGKMLVYRSGAVKIKLGDTLYDVSPGSDCTF 300

Query: 301 LQHVVAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
            Q ++AI+    QCC +G +  R VVTPD+ SLLNSV NL
Sbjct: 301 AQDLMAIDIASKQCCTIGKLRKRAVVTPDVDSLLNSVINL 330

[Close]

BLAST of CsGy4G003920 vs. TrEMBL
Match: tr|A0A2C9UJH2|A0A2C9UJH2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G037500 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 6.4e-70
Identity = 160/336 (47.62%), Postives = 211/336 (62.80%), Query Frame = 0


Query: 1   MKNSDPSPPRRKVKFAPXXXXXXXXXXXXXXXXXXXDGEGYVAQTRYLLRRANENLGKRA 60
           M    PSP RRKVKF P                   + E  VAQ + L+ +  +NL ++ 
Sbjct: 1   MNQEQPSPVRRKVKFIP-KGRKPKATVPKSEVNYNDNQEDEVAQAQKLMTKFRDNLTRQV 60

Query: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSR--KNDIEPEVDEDEEFVLPVARD 120
            KVEK+SSVQVAFGPGA  TSSSIRTYGVP  EN  R  ++ I+  +D+D + +      
Sbjct: 61  PKVEKQSSVQVAFGPGA--TSSSIRTYGVPGGENAGRCSRSQIKDSIDDDGKIISSSLST 120

Query: 121 VNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERL 180
           V ED      +T D + + ++ A+  KTK+ ++EPWDY ++YYPTTLPLR P+SGDPE L
Sbjct: 121 VKED------RTIDSLPD-AADALPLKTKKAFREPWDYDHTYYPTTLPLRRPHSGDPEIL 180

Query: 181 DEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKV 240
           DEAEFG       YDE ++ PA DLGLL+E  +    FFQLPA+LP  K+S+T  GKEK 
Sbjct: 181 DEAEFGDAARKLVYDEKTINPASDLGLLEECDKEKMLFFQLPAKLPHFKRSATVKGKEKA 240

Query: 241 GNSRSSNSTSSSDLD-DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHV 300
            ++  S     S  + +L++L  G MGK+L+Y+SGA+KL+LGD LYDVS G +C F Q V
Sbjct: 241 EDATPSQGKGVSKKESNLEELPGGYMGKMLVYRSGAVKLKLGDTLYDVSPGEDCKFAQDV 300

Query: 301 VAINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           +AI      CC +G++G R VVTPD+ SLLNSV NL
Sbjct: 301 MAIKNAAKHCCAIGELGKRAVVTPDVDSLLNSVINL 326

The following BLAST results are available for this feature:

BLAST of CsGy4G003920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146914.1	5.7e-171	100.00	PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis sativus] >...	[more]
XP_008453902.1	5.2e-156	96.31	PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo]	[more]
XP_022922968.1	2.0e-115	68.96	DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita moschata]	[more]
XP_022141051.1	2.9e-114	74.40	DNA-directed RNA polymerase III subunit RPC4-like isoform X2 [Momordica charanti...	[more]
XP_022985496.1	4.9e-114	69.25	DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita maxima]	[more]

BLAST of CsGy4G003920 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25180.1	8.0e-42	36.53	RNA polymerase III RPC4	[more]
AT5G09380.1	3.8e-36	38.79	RNA polymerase III RPC4	[more]

BLAST of CsGy4G003920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q91WD1\|RPC4_MOUSE	2.7e-07	33.07	DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d ...	[more]
sp\|P05423\|RPC4_HUMAN	4.7e-07	32.58	DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D P...	[more]
sp\|Q5E9Z7\|RPC4_BOVIN	6.1e-07	37.11	DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=...	[more]
sp\|P25441\|RPC4_YEAST	5.1e-06	30.17	DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain...	[more]
sp\|Q8T1V7\|RPC4_DICDI	4.4e-05	36.36	DNA-directed RNA polymerase III subunit rpc4 OS=Dictyostelium discoideum OX=4468...	[more]

BLAST of CsGy4G003920 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZ61\|A0A0A0KZ61_CUCSA	3.8e-171	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022870 PE=4 SV=1	[more]
tr\|A0A1S3BYJ9\|A0A1S3BYJ9_CUCME	3.4e-156	96.31	DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A2P2JCM0\|A0A2P2JCM0_RHIMU	2.0e-71	47.65	DNA binding protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A067JSB7\|A0A067JSB7_JATCU	2.9e-70	47.06	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26275 PE=4 SV=1	[more]
tr\|A0A2C9UJH2\|A0A2C9UJH2_MANES	6.4e-70	47.62	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G037500 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005666	DNA-directed RNA polymerase III complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed RNA polymerase activity
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006383	transcription from RNA polymerase III promoter

Vocabulary: **INTERPRO**
Term	Definition
IPR007811	RPC4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription from RNA polymerase III promoter
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
cellular_component	GO:0005666	DNA-directed RNA polymerase III complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G003920.1	CsGy4G003920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PFAM	PF05132	RNA_pol_Rpc4	coord: 215..323 e-value: 1.6E-25 score: 90.2
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PANTHER	PTHR13408	DNA-DIRECTED RNA POLYMERASE III	coord: 6..329
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..252
None	No IPR available	PANTHER	PTHR13408:SF3	SUBFAMILY NOT NAMED	coord: 6..329

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G003920	Cla010728	Watermelon (97103) v1	cgybwmB290
CsGy4G003920	Csa4G022870	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G003920	MELO3C017658	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G003920	ClCG07G016860	Watermelon (Charleston Gray)	cgybwcgB297
CsGy4G003920	CSPI04G04000	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G003920	CmaCh16G002040	Cucurbita maxima (Rimu)	cgybcmaB493
CsGy4G003920	CmoCh16G002230	Cucurbita moschata (Rifu)	cgybcmoB464
CsGy4G003920	Lsi07G001030	Bottle gourd (USVL1VR-Ls)	cgyblsiB277
CsGy4G003920	Cp4.1LG14g05450	Cucurbita pepo (Zucchini)	cgybcpeB484
CsGy4G003920	MELO3C017658.2	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G003920	CsaV3_4G004060	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G003920	Cla97C07G143860	Watermelon (97103) v2	cgybwmbB298
CsGy4G003920	Bhi01G002027	Wax gourd	cgybwgoB355
CsGy4G003920	Carg16750	Silver-seed gourd	carcgybB0860

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G003920	Wax gourd	cgybwgoB361
CsGy4G003920	Cucurbita maxima (Rimu)	cgybcmaB542
CsGy4G003920	Cucurbita moschata (Rifu)	cgybcmoB516
CsGy4G003920	Cucurbita pepo (Zucchini)	cgybcpeB503
CsGy4G003920	Silver-seed gourd	carcgybB0382