CSPI04G04000 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G04000
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	DNA-directed RNA polymerase III subunit RPC4
Location	Chr4 : 2535425 .. 2540389 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCTTCGTTGGTATCTCATCATTTCTTCATTCCGCCTGGTCTAGGGTTCGATTCTTTCCCTTTTCTTCTTTTTCACCATTTTTGTCCCGTTTCCCTTCACCATCATCTTCAACCTCGAGCTCATGAAGAATTCCGATCCATCTCCTCCACGCAGAAAGGTAGTAATCAAAATAACTTTTCAAATCACGCCTAAATAATATCCTAAACTTCTTCTTTAACTCGATTTAGATCTAAACCCTTTTCCTTCTGCAGGTCAAATTCGCTCCAAAATCCTCACAGCGCAAGAGGCCACCACCACCACCGGTTCAGAAAACGTACTCCTCTGAATCTCATCTTCTTCCACATTTTGAATTTGTAAAATCCTAATTTGTTTGGGGAATTGCTGCAGTGAAGATGAAGATGGTGAGGGTTATGTTGCTCAAACTCGCTACCTATTACGCCGTGCCAATGTAAGCTTCTTCTTCTTCGTCTTCTTGTTATAATGGTTTTTCGAATTCTTTTGTGTGTTTTGGTTTTGATGTTTAGATGACTTTTGGTTTTCTGATCAGTTAGAATTTGGATGATTTGAAAAGATTTTCTTCTTCTACTTCTACTTCTGCTTTCCCGTTTGGTTCCCGAGGAAATTGTTTTTATGGAAATGAATCGTTTTCCGGACAACGTTCTTTCTTCTTTATTTCTCTTCCTGGAGAAGCGCTTGGGGTTTCTCTTTTTCTTTTCGTCGATAAAAATTAAATTAAAGGTTAAAATATTTGGTTAGTCTTAGCCTAAAAAAAAAGTGAACTTTATTATTTTAGTAAAAAATCTTCCAATTTTAAAAAGTCTTAAAAGTACACTTAAATTTTTAAAATGAGGACAAAAATACAATGCAAATTTATTTTTTGAACTTTACAAAATTTCACAACTAGAAAAAACATTAGAAATTCCCTTATTTCATTAATATCGTCTTACTTCTCTTTTCTTCTTCATTTTCGTTAATTATTTGACACTTGTTTAGCTCAAATAAATAAATAAAATCGCTAAGATATATAAACTATAGAAGATAAATAAAAGGGCTAATGATTTGAAGGCTTAAATATTATAACTAAATTATATGTTAGTTGGTGTGTATGTGTTAGTTAATATTCAAATACTTTTTTATTTGAATATTGATCGTATGTTAATAAAATATTAAATTAGTAAAAATTGTCATATATAACTTGCCAACTTTTATTTATAGACCATTTAAAATAATTTACAAACCTCAAATAACAAAACTTGGAGATCAACTAATCTCAAACCTTAATAATTAAAAAAACTTTTAATGAACTTGGAAAATGTTAGTAGTACTATCCTCCCCCCTAATTTGTCCGGTCACCAAATATATATATTAATTTATTGTTTATTTTCTTTATGAACTTCACATATTTTGTTGCAATCATTAAAAGGAGCTAATATAGAAAATTTCTTGTTATGACCAAACAGTAGTTATTTTTTGAAAAATAAATTCTTATTTTTAGAAAACAATTTCACTAATGTTAGTTGCTTAAAAAAATTATTAATATTAGTTTTGCATGTAACTATATAATTTAGTTTTTTTTTTTTTTGTTTACGGTTCAATCTGCAATAATTAAAAGATGATTATTTTTTGGTTATTTATGTAACTTACATTTCTCAACTCGTTATTCGTGTTAGTTTTTCTATAATAATTACCAACTCAACTCTGACTTTTATCACCAACCAAACGTTAAATCTAGATATTCAATCTTTTGTTAAACTCACTATGTTTGATTATTTTTTGAAATGTTTGTGCTTTATTTTAGCTATTTGGTTTTCTAGATGAGTTTTTTTGTCCCTTTTTTTAGAATAAGATGAGTTTTTTGGCCTGCTATTGCTATATTTGAGCATTTTCTTTACGCTATTATGGATTATTTCTTTCTTGAATAGTAATTTTATCAATTACCTTTTGTGTTTAGGCCTCAAAGTTAAAACTATGGACTTATTAAGTTCAAAGCAAAATTTCATATCTTCTTAAACAATATTACAATAGTACACATCACAAATAGAACAATTTTCAACAATATCTTCATACGAAATAATTTTGTTTCATTTTTAGTGTTGTAGATTTATGTTCCTTGATCAAATACGATTTAATTCACCTTTAAAATATGTTAACATGTTTGAAAACATAGCCTATGGGTGGAACTATATCCACCGATGATGGCTAGGTAATGAAACAATTGTTTGATTTTTCACTTTCTTTACTCATTTGAAAGAGCATCGAGCATCCATTAGTGTTAGACAGTACAGACTACCTGTTAAGAGTTAAAACAGCAAAGGGGCAACAATTGACTCCTTAACCTTTGGCCTTAATATGTAACTGTAAGAACTGATTTGGTTTTCTTTCCACTTTGCAGGAGAATCTCGGAAAACGAGCGAACAAGGTCGAAAAAAAATGTATATGAAGTATTACTTTAAAATTTTGAATTAATATCAATAGCACTGTATTGGTTTTTTAATATAATTTGGACGGATTATCCATGTAAACGGGTTTGTTTTCATTCACAAGAGAGTGTGGGCTGCTACAATGTGGCTAATAATTTTGTAGAGTTGAATGTATGAAGGAAAAAATTGCAAAAGCACCTTGAACATTCGTATCTAATAATTATTGGGTGCATTCAGATTTTTAAATCTACCTCCAACGACTAAATAATTTGTCATCACGAGAAAAGAAAATCCCAAGTTCTTAGCAACGGAAGATGAAGTTTCCATTGTTGCCTTAACATGATCTCTATTTTCATTTGCATATCTGCAGCTTCAGTGCAAGTTGCATTCGGTCCTGGCGCTGAATCAACGTCATCTTCTATTAGAACATATGGAGTTCCCAAAGTAGAAAACGGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGAGGAGTTTGTCTTGCCAGTGGCTAGGGATGTTAACGAAGATGGAAAATATTTTGATAAAAAAACCAAAGATGGAATTACTGAATCCTCTAGTTCGGCTATGGAAACCAAGACCAAGAGGGATTACAAAGAACCTTGGGTAATCTCTTTTTCTCTCTCACTTTTGACACACACATAAAGATTAACTTCCTGATCTCATGATACTTTTTCAGGATTACCAAAATTCTTACTATCCTACTACACTCCCTTTACGGATGCCTTACTCTGGAGACCCTGGTATGTCTTTATTCTCTCCCAAAGAGGAATAGCAGAAGTGTCACATTGGCCACCTTTAGCTTTTGGTTTGTGAAAACTGATAAGTGATTTATGATATAAAATGATCTTAATGGCATCTTAGACATGTTTGTGAGTGATTTTGAAAGAATTAAAATCACTTTTGTCATGTTCAAAGTTGCTATGAAACAATGTCTTTATTCATATGTTTGATTTCACACGTTGAACTGTGAATATCTATACAATCAAAATTGGTTTTGAAGCATTAGAACTATTTTATGGAGCTAATACTTAATCACGCAAAAGCTTATAATCAAATCTTGAAAACAAAAGCAGACTTTTAAGAGTCATTAGATAAGGGATTGCTCATCTATGATGAAATGAACTTTTGACCTTAGTGGAGGATCGTTCTGACTTTGTTCTGTAGTTCAGCTAACTCTCCTGCCTCTTCTTGGATTTAGAACGACTTGATGAAGCCGAGTTTGGGCAGGATGTGATGAATAGAGAGTATGATGAGAACTCTGTAATACCTGCCTTGGATCTCGGGTTGCTGGTGGGTGAATAATTGGGAACTGTGGCTTATTTCATATATACATTGGTATTTCTTTATGCAGAATCTAGTTATAACTTATAATATGGTGGTGTTTTTTGATGCAGGATGAAAACACAGAGAGTACTAAGTACTTCTTTCAGCTTCCTGCACGTCTTCCTTTACCCAAACAATCGTCTACTGCAACGGGAAAGGAGAAAGTAGGAAATTCGAGATCTTCAAACAGCACGAGCTCGTCCGATCTCGACGATTTGAAGAAACTGTCTGCTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGACATTCTTTACGATGTGAGTAAAGTCGTTAACTTTCTACAACCAATATCAAGCATTGTTGAGTTCTTTTTTTTGCTGCCCGCCTCCAGTTTAGATGTCATATATTGTGATATTATTTGTGTTTGGAATGCATTTAATTTGTTGTGTGCCACCCCAAATGTGACCTATCGCAATCAGTGAACCGAGGTCTAAAGATGACTCCAGCCCTCAAAATCGAAATTGTATTCATATTTATGTTATTTACAATTTAGACCGTAGGGTTTAGAGGAGTGCACTATATAAACTCAAACTCAAAAGGCACTTGAATCAAGTTAGCAGATATACTGTTAAAAATCAAGTGAATGTCAATTTTTTATTGTTTACGTTTTCCGTTTATTTTTTAAGTAGATTTCTTAACAATTTGGTCCTGTTTTGCGGCTGTTGTAGGTTTCTTCTGGATCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACAGTGAAGAGGGACAGTGCTGTGATCTCGGAGACATTGGCAACCGAGTTGTTGTAACACCGGATATTAGTTCCCTTTTAAATTCAGTGACTAATTTGAGATGATTGTGAAGAAAAAGCCTGTGGATAGAACAACCAACAAAAGAACACAACGAAGAAGGGCAAATCCTTACAATGTCAAAATGGGACTTTTACGTCTGGCTGTGTAGTGAAGGTGCTCATTTAGTAAGGAAGTTGGAGGGATGTCAAGTTCTTGTGTAATCTTTCTCCTTTGTTATTTCTATGGAAACAACAACGTATTCAGTATCTTTGATTTCTAGCTGTGGAATAGGTTTTTACCCGATAATGTTGATAGTTGTTGTAAAGGACTTTTTGTATATAGTCTTTCTTGATGGTGGTAATATTAGGATCCACACTTATCATGCA

mRNA sequence

ATGAAGAATTCCGATCCATCTCCTCCACGCAGAAAGGTCAAATTCGCTCCAAAATCCTCACAGCGCAAGAGGCCACCACCACCACCGGTTCAGAAAACTGAAGATGAAGATGGTGAGGGTTATGTTGCTCAAACTCGCTACCTATTACGCCGTGCCAATGAGAATCTCGGAAAACGAGCGAACAAGGTCGAAAAAAAATCTTCAGTGCAAGTTGCATTCGGTCCTGGCGCTGAATCAACGTCATCTTCTATTAGAACATATGGAGTTCCCAAAGTAGAAAACGGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGAGGAGTTTGTCTTGCCAGTGGCTAGGGATGTTAACGAAGATGGAAAATATTTTGATAAAAAAACCAAAGATGGAATTACTGAATCCTCTAGTTCGGCTATGGAAACCAAGACCAAGAGGGATTACAAAGAACCTTGGGATTACCAAAATTCTTACTATCCTACTACACTCCCTTTACGGATGCCTTACTCTGGAGACCCTGAACGACTTGATGAAGCCGAGTTTGGGCAGGATGTGATGAATAGAGAGTATGATGAGAACTCTGTAATACCTGCCTTGGATCTCGGGTTGCTGGATGAAAACACAGAGAGTACTAAGTACTTCTTTCAGCTTCCTGCACGTCTTCCTTTACCCAAACAATCGTCTACTGCAACGGGAAAGGAGAAAGTAGGAAATTCGAGATCTTCAAACAGCACGAGCTCGTCCGATCTCGACGATTTGAAGAAACTGTCTGCTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGACATTCTTTACGATGTTTCTTCTGGATCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACAGTGAAGAGGGACAGTGCTGTGATCTCGGAGACATTGGCAACCGAGTTGTTGTAACACCGGATATTAGTTCCCTTTTAAATTCAGTGACTAATTTGAGATGA

Coding sequence (CDS)

ATGAAGAATTCCGATCCATCTCCTCCACGCAGAAAGGTCAAATTCGCTCCAAAATCCTCACAGCGCAAGAGGCCACCACCACCACCGGTTCAGAAAACTGAAGATGAAGATGGTGAGGGTTATGTTGCTCAAACTCGCTACCTATTACGCCGTGCCAATGAGAATCTCGGAAAACGAGCGAACAAGGTCGAAAAAAAATCTTCAGTGCAAGTTGCATTCGGTCCTGGCGCTGAATCAACGTCATCTTCTATTAGAACATATGGAGTTCCCAAAGTAGAAAACGGTAGCAGAAAAAATGACATTGAGCCTGAAGTTGATGAAGATGAGGAGTTTGTCTTGCCAGTGGCTAGGGATGTTAACGAAGATGGAAAATATTTTGATAAAAAAACCAAAGATGGAATTACTGAATCCTCTAGTTCGGCTATGGAAACCAAGACCAAGAGGGATTACAAAGAACCTTGGGATTACCAAAATTCTTACTATCCTACTACACTCCCTTTACGGATGCCTTACTCTGGAGACCCTGAACGACTTGATGAAGCCGAGTTTGGGCAGGATGTGATGAATAGAGAGTATGATGAGAACTCTGTAATACCTGCCTTGGATCTCGGGTTGCTGGATGAAAACACAGAGAGTACTAAGTACTTCTTTCAGCTTCCTGCACGTCTTCCTTTACCCAAACAATCGTCTACTGCAACGGGAAAGGAGAAAGTAGGAAATTCGAGATCTTCAAACAGCACGAGCTCGTCCGATCTCGACGATTTGAAGAAACTGTCTGCTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTATTAAGTTGAGGCTGGGAGACATTCTTTACGATGTTTCTTCTGGATCAAACTGCAGTTTTCTTCAACATGTTGTGGCAATCAACAGTGAAGAGGGACAGTGCTGTGATCTCGGAGACATTGGCAACCGAGTTGTTGTAACACCGGATATTAGTTCCCTTTTAAATTCAGTGACTAATTTGAGATGA

Homology

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BLAST of CSPI04G04000 vs. Swiss-Prot
Match: RPC4_MOUSE (DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus GN=Polr3d PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 9.3e-08
Identity = 43/127 (33.86%), Postives = 65/127 (51.18%), Query Frame = 1


Query: 216 FFQLPARLP--LPKQSSTATGKEKVGNS---------RSSNSTSSSDLDDLKKLSAGCMG 275
           F QLP  LP   P Q       E  G           +   +  + +   L  L+ G +G
Sbjct: 268 FLQLPDTLPGQPPTQDIKPVKTEVQGEDGQMVVIKQEKDREARLAENACTLADLTEGQVG 327

Query: 276 KLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI---NSEEGQCCDLGDIGNRVVVTP 329
           KLLI KSG ++L LG +  DV+ G+ CSFLQ +V++   +S  G+   LG + +++V +P
Sbjct: 328 KLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGEMTVLGHVKHKLVCSP 387

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BLAST of CSPI04G04000 vs. Swiss-Prot
Match: RPC4_HUMAN (DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens GN=POLR3D PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-07
Identity = 44/132 (33.33%), Postives = 66/132 (50.00%), Query Frame = 1


Query: 211 ESTKYFFQLPARLP--LPKQSSTATGKEKVGNS---------RSSNSTSSSDLDDLKKLS 270
           E    F QLP  LP   P Q       E  G           +   +  + +   L  L+
Sbjct: 263 EEELLFLQLPDTLPGQPPTQDIKPIKTEVQGEDGQVVLIKQEKDREAKLAENACTLADLT 322

Query: 271 AGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI---NSEEGQCCDLGDIGNR 329
            G +GKLLI KSG ++L LG +  DV+ G+ CSFLQ +V++   +S  G+   LG + ++
Sbjct: 323 EGQVGKLLIRKSGRVQLLLGKVTLDVTMGTACSFLQELVSVGLGDSRTGEMTVLGHVKHK 382

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BLAST of CSPI04G04000 vs. Swiss-Prot
Match: RPC4_BOVIN (DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus GN=POLR3D PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-07
Identity = 37/97 (38.14%), Postives = 59/97 (60.82%), Query Frame = 1


Query: 235 KEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFL 294
           +EK   +R + +T +     L  L+ G +GKLLI KSG ++L LG +  DV+ G+ CSFL
Sbjct: 303 QEKDREARLAENTCT-----LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFL 362

Query: 295 QHVVAI---NSEEGQCCDLGDIGNRVVVTPDISSLLN 329
           Q +V++   +S  G    LG I +++V +P+  SLL+
Sbjct: 363 QELVSVGLGDSRTGDMTVLGHIKHKLVCSPNFESLLD 394

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BLAST of CSPI04G04000 vs. Swiss-Prot
Match: RPC4_YEAST (DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC53 PE=1 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 3.0e-06
Identity = 35/116 (30.17%), Postives = 65/116 (56.03%), Query Frame = 1


Query: 217 FQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDL---DDLKKLS----AGCMGKLLIY 276
           FQLP RLP  ++ +    KE +    S  S    ++   D    LS    AG +G + ++
Sbjct: 307 FQLPTRLPAFERPAVKEEKEDMETQASDPSKKKKNIKKKDTKDALSTRELAGKVGSIRVH 366

Query: 277 KSGAIKLRLGDILYDVSSGSNCSFLQHVVAIN-SEEGQCCD-LGDIGNRVVVTPDI 324
           KSG + +++G+++ D+  G+  +FLQ V+A++ +++    + LG +  ++VVTP I
Sbjct: 367 KSGKLSVKIGNVVMDIGKGAETTFLQDVIALSIADDASSAELLGRVDGKIVVTPQI 422

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BLAST of CSPI04G04000 vs. TrEMBL
Match: A0A0A0KZ61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022870 PE=4 SV=1)

HSP 1 Score: 648.3 bits (1671), Expect = 5.2e-183
Identity = 333/334 (99.70%), Postives = 334/334 (100.00%), Query Frame = 1


Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60
           MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA
Sbjct: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120
           NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN
Sbjct: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120

Query: 121 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 180
           EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE
Sbjct: 121 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 180

Query: 181 AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN 240
           AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN
Sbjct: 181 AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN 240

Query: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI 300
           SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
Sbjct: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI 300

Query: 301 NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 335
           N+EEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR
Sbjct: 301 NTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 334

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BLAST of CSPI04G04000 vs. TrEMBL
Match: A0A067JSB7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26275 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 3.4e-73
Identity = 167/341 (48.97%), Postives = 221/341 (64.81%), Query Frame = 1


Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDG---EGYVAQTRYLLRRANENLG 60
           M    PSP  RK KF PK+  +++P P  V K+E  D    E   AQ + L+R+ NENL 
Sbjct: 1   MDQEQPSPTPRKAKFTPKAPPQRKPIPT-VTKSEVNDSNNDEDEAAQAQKLMRKFNENLR 60

Query: 61  KRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENG--SRKNDIEPEVDEDEEFVLPV 120
           ++  KVEKKSSVQVAFGPGA + S+SIR YGVP  EN   S + DI+   ++D   V+  
Sbjct: 61  RKVPKVEKKSSVQVAFGPGA-APSTSIRKYGVPGCENAGSSSRLDIKDSDNDDRRIVVSS 120

Query: 121 ARDVNEDG--KYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSG 180
                EDG  KY  +         +   +  K K+DY+EPWDY ++YYPTTLPLR PYSG
Sbjct: 121 LSTAEEDGASKYHSE---------AIGVLPLKIKKDYREPWDYNHTYYPTTLPLRRPYSG 180

Query: 181 DPERLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTAT 240
           DPE L+E EFG+     EY+EN++ PA DLGLL+E+ +   +FFQLP++LPL K+S+   
Sbjct: 181 DPELLNEEEFGEAARKLEYNENTIKPASDLGLLEESDKERLFFFQLPSKLPLVKRSAITK 240

Query: 241 GKEKVGNSRSSNSTSSSDLD-DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCS 300
           GKEKV  S  S  TS+   +   + LS G MGK+L+Y+SGA+K++LGD LYDVS GS+C+
Sbjct: 241 GKEKVEGSTPSQGTSALKKESSFQGLSEGYMGKMLVYRSGAVKIKLGDTLYDVSPGSDCT 300

Query: 301 FLQHVVAINSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           F Q ++AI+    QCC +G +  R VVTPD+ SLLNSV NL
Sbjct: 301 FAQDLMAIDIASKQCCTIGKLRKRAVVTPDVDSLLNSVINL 330

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BLAST of CSPI04G04000 vs. TrEMBL
Match: B9R9V4_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1500880 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 5.9e-70
Identity = 162/336 (48.21%), Postives = 217/336 (64.58%), Query Frame = 1


Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRP--PPPPVQKTEDEDGEGYVAQTRYLLRRANENLGK 60
           M +  PSP +RKVKF PK+  ++RP    P  +    ++ E    Q + L+R+ NEN  +
Sbjct: 1   MDDEQPSPSQRKVKFTPKAPSQRRPRRTVPKTEVNGVDNNEDEAVQAQKLMRKFNENFRR 60

Query: 61  RANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARD 120
           +  +VEKKS+VQVAFGPGA S S+SIRT+GV K EN    + I+   D+D + V+     
Sbjct: 61  QGPRVEKKSTVQVAFGPGATS-STSIRTFGVSKGENPV-SSGIKDSTDDDGKIVISSLST 120

Query: 121 VNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERL 180
             ED +  +  ++D        A+  K K+DY+EPWDY  +YYPTTLPLR PYSGDP  L
Sbjct: 121 DKED-EIINCASED------IDALPLKIKKDYREPWDYDRTYYPTTLPLRRPYSGDPVLL 180

Query: 181 DEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKV 240
           DEAEFG+     EYDE+++ PA DL LL+E       FFQLPA+LPL K+S++A GKEK 
Sbjct: 181 DEAEFGEAARKLEYDESTMNPASDLELLEECDTEKMIFFQLPAKLPLVKRSASAKGKEKA 240

Query: 241 -GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHV 300
            G+  S    ++     L  LSAG MGK+L+Y+SGA+KL+LGD LYDVS GS+C F Q V
Sbjct: 241 EGSIPSQGKNAAKKESSLDGLSAGYMGKMLVYRSGAVKLKLGDTLYDVSQGSDCMFAQDV 300

Query: 301 VAINSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           +AIN+    CC +G++  R VVTPD+ SLL+SV NL
Sbjct: 301 MAINTAAKHCCTIGELEKRAVVTPDVDSLLDSVVNL 327

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BLAST of CSPI04G04000 vs. TrEMBL
Match: A0A061FZZ6_THECC (DNA binding protein, putative isoform 2 OS=Theobroma cacao GN=TCM_014896 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 9.5e-68
Identity = 160/337 (47.48%), Postives = 209/337 (62.02%), Query Frame = 1


Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60
           M    PS  RRKV+FAPK+ Q  R     V K+E  D +G  AQ +YLL R NEN  ++ 
Sbjct: 1   MDQDGPSSGRRKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQAQYLLGRFNENQTRQR 60

Query: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120
            KVEKKSS Q++FGPGA S S+ +R YG  +     +  D      +D         D  
Sbjct: 61  PKVEKKSSAQISFGPGAPS-SNLLRAYGSQRGGTSGKSTDSRQRSPDD--------NDGQ 120

Query: 121 EDGKYFDKKTKDGITESSSSAMET---KTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPER 180
             G +     +D     SS A+E    K KR+Y+EPWDY ++YYP TLPLR PYSGDPE 
Sbjct: 121 IIGSFPSASKEDRTDICSSDAIEASAPKIKREYREPWDYHHTYYPITLPLRRPYSGDPEL 180

Query: 181 LDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEK 240
           LD+AEF  +   +EYDE ++ PA DLGLL+E  +   +FFQLPA LP+ K+ ++  GKEK
Sbjct: 181 LDQAEF-VEAARKEYDEKTINPASDLGLLEEGEKGKMFFFQLPANLPVIKRLASTKGKEK 240

Query: 241 VGNSRSSNSTSSSDLD-DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQH 300
             N  SS    +      L++L  G MGK+L+YKSGA+KL+LG+ LYDVS GS+C F Q 
Sbjct: 241 AENLGSSERFGALKKGCQLEELPGGFMGKMLVYKSGAVKLKLGETLYDVSPGSDCIFAQD 300

Query: 301 VVAINSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           V A+N+ E  CC +G++G RVVVTPDISS+LNSV +L
Sbjct: 301 VAAVNTTEKHCCVIGELGKRVVVTPDISSVLNSVIDL 327

[Close]

BLAST of CSPI04G04000 vs. TrEMBL
Match: A0A058ZWX9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00171 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.0e-66
Identity = 149/330 (45.15%), Postives = 205/330 (62.12%), Query Frame = 1


Query: 11  RKVKFAPKSSQRKRPPPPPVQKTEDEDGEG-----YVAQTRYLLRRANENLGKRANKVEK 70
           RKVKF PK+   ++ PP    KTE   G+G       A+ + LLRR NEN G++  +V  
Sbjct: 7   RKVKFTPKAPAPRKKPPTVSPKTEANGGDGGEEAAVEAEAQMLLRRFNENFGQQGARVGN 66

Query: 71  KSSVQVAFGPGAESTSSSIRTYGVPKVEN---GSRKNDIEPEVDEDEEFVLPVARDVNED 130
           KSSVQVAFGPGA S++S+IRT+GVPK E    G           + +    P+  + +  
Sbjct: 67  KSSVQVAFGPGAPSSASTIRTFGVPKEERSDQGCGPRLRSYAAAKGQTISPPIVAETD-- 126

Query: 131 GKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAE 190
                    D   E +++ +  K+K++YKEPWD+ +SYYPTTLPLRMPYSGDPE L+E E
Sbjct: 127 -------ATDATMEDATAEVPRKSKKEYKEPWDFHHSYYPTTLPLRMPYSGDPEILNEKE 186

Query: 191 FGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSR 250
           FG+   N EYDE  +  A DLGLL+++      FFQLP  LP  ++S++  GKEK  +S 
Sbjct: 187 FGEATRNFEYDEGIINAASDLGLLEDSGRGKMLFFQLPPNLPSVRRSTSVKGKEKAESSA 246

Query: 251 SSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAINS 310
           SS + +S     L+ LS G MGKL++YKSGA+KL+LG+ LYDVS GS+C F Q V  +N+
Sbjct: 247 SSAADASERDCKLEDLSGGYMGKLVVYKSGAVKLKLGETLYDVSPGSDCIFAQDVAVVNT 306

Query: 311 EEGQCCDLGDIGNRVVVTPDISSLLNSVTN 333
            +   C LG++G R ++TPD  SLLN + +
Sbjct: 307 ADKHFCSLGEVGKRGIITPDFDSLLNYIAD 327

[Close]

BLAST of CSPI04G04000 vs. TAIR10
Match: AT4G25180.1 (AT4G25180.1 RNA polymerase III RPC4)

HSP 1 Score: 173.3 bits (438), Expect = 2.5e-43
Identity = 125/334 (37.43%), Postives = 176/334 (52.69%), Query Frame = 1


Query: 5   DPSPPRRKVKFAPKSSQ-RKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRANKV 64
           D    + K +F P   +  +R P  P   TE E+ E  +  +R   RR    +G+R    
Sbjct: 2   DSGEQKSKRRFQPNPPRPSRRLPIAPTSNTEAEEDEENIKASRQFDRRI---VGRRPKTE 61

Query: 65  EKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN--- 124
            K SS +VAF P     +  IR++GVPK E+    +D+ P        +LP    V    
Sbjct: 62  TKASSPEVAFQPSLSPLA--IRSFGVPK-EDDKPNSDVNPSSPAS---ILPAVSSVTAAQ 121

Query: 125 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 184
           EDG+                   T+T  DY EPWDY+NSYYPT LPLR P SGD E LD+
Sbjct: 122 EDGEEVHN-------------FVTRTGDDYVEPWDYRNSYYPTVLPLRKPNSGDIELLDQ 181

Query: 185 AEFGQDVMNREYDENSVIPALDLGLLD-ENTESTKYFFQLPARLPLPKQSSTATGKEKVG 244
            EFG+   NR+YDEN++  A +LGL   ++++   + F++P  LP+ KQ++ AT K    
Sbjct: 182 EEFGEVAKNRDYDENTINSAEELGLTSVQHSKKQMFIFKIPDCLPVVKQTTGATTK---- 241

Query: 245 NSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVA 304
             RS    SS   +  + L  G MGK+L+YKSGA+KL++GD L+DVS G        VVA
Sbjct: 242 --RSVREYSSGISNPFEGLPEGFMGKMLVYKSGAVKLKVGDALFDVSPGPGTKIPNDVVA 301

Query: 305 INSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           I+ +   C  +G     V VTPD+ SLLN  +++
Sbjct: 302 IDIKGRNCSRIGSSAKFVTVTPDVESLLNPASDM 307

[Close]

BLAST of CSPI04G04000 vs. TAIR10
Match: AT5G09380.1 (AT5G09380.1 RNA polymerase III RPC4)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-35
Identity = 84/201 (41.79%), Postives = 122/201 (60.70%), Query Frame = 1


Query: 134 ITESSSSAMETKTKR-DYKEPWDYQNSYYPTTLPLRMPYSGDPERLDEAEFGQDVMNREY 193
           +  S+ +   T T+  +YKEPWDY  SYYP TLP+R PY+GDPE LD  EF Q      +
Sbjct: 82  LNRSNGAYGSTSTQEIEYKEPWDYY-SYYPITLPMRRPYAGDPEVLDVEEFMQ---AGGH 141

Query: 194 DENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDL 253
            E+S+  A +LGL++++ E   +F +LP+ +PL      +T  E +    +         
Sbjct: 142 HEDSLNTAANLGLMEDSGEQKMFFMRLPS-VPL-----ASTPTENLETRPNIKGPVEKKT 201

Query: 254 DDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAINSEEGQCCDLGD 313
            DLK L  G MGKLL+YKSGA+K++LG++LYDVS G    F Q V+ +N+E+  CC +GD
Sbjct: 202 VDLKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGD 261

Query: 314 IGNRVVVTPDISSLLNSVTNL 334
           +    V+TPDI S+L  + N+
Sbjct: 262 VYKHAVLTPDIDSILKDIENI 272

[Close]

BLAST of CSPI04G04000 vs. NCBI nr
Match: gi|449458357|ref|XP_004146914.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis sativus])

HSP 1 Score: 648.3 bits (1671), Expect = 7.5e-183
Identity = 333/334 (99.70%), Postives = 334/334 (100.00%), Query Frame = 1


Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60
           MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA
Sbjct: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120
           NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN
Sbjct: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120

Query: 121 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 180
           EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE
Sbjct: 121 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 180

Query: 181 AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN 240
           AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN
Sbjct: 181 AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN 240

Query: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI 300
           SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI
Sbjct: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI 300

Query: 301 NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 335
           N+EEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR
Sbjct: 301 NTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 334

[Close]

BLAST of CSPI04G04000 vs. NCBI nr
Match: gi|659107882|ref|XP_008453902.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like [Cucumis melo])

HSP 1 Score: 619.8 bits (1597), Expect = 2.8e-174
Identity = 319/334 (95.51%), Postives = 325/334 (97.31%), Query Frame = 1


Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60
           MKN D SPPRRKVKFAPKSSQR+RPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA
Sbjct: 1   MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARDVN 120
           NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVA DVN
Sbjct: 61  NKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMDVN 120

Query: 121 EDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERLDE 180
           EDGK+FDKKTKDGI ESSSSAM TKTKRDYKEPWDYQNSYYPTTLPLRMPYSGD ERLDE
Sbjct: 121 EDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERLDE 180

Query: 181 AEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKVGN 240
           AEFGQD MNREYDENSVIPALDLGL DENTE+TKYFFQLPARLPLPKQSSTATGKEKVGN
Sbjct: 181 AEFGQDAMNREYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKVGN 240

Query: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVVAI 300
           SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGS+CSFLQHVVAI
Sbjct: 241 SRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVVAI 300

Query: 301 NSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNLR 335
           N+E+GQCCDLGDIG RVVVTPDISSLLNSVTNLR
Sbjct: 301 NTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNLR 334

[Close]

BLAST of CSPI04G04000 vs. NCBI nr
Match: gi|1009122078|ref|XP_015877810.1| (PREDICTED: uncharacterized protein LOC107414218 [Ziziphus jujuba])

HSP 1 Score: 295.4 bits (755), Expect = 1.2e-76
Identity = 166/337 (49.26%), Postives = 230/337 (68.25%), Query Frame = 1


Query: 2   KNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRAN 61
           ++   S  R+K++FAPK   R++P PPP +K   ++      + + LLR+ NENL +R +
Sbjct: 3   QDGSSSTTRKKLRFAPKPPPRRKPRPPPPKKEAGDEDVDEAKEAKSLLRQFNENLTRRGS 62

Query: 62  KVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENGSRKNDIEPEVDED---EEFVLPVARD 121
           + EKKSSVQVAFGPGA + SSSIRT+GV K  N  + +D+EP+V E    E+ + P+  D
Sbjct: 63  RAEKKSSVQVAFGPGA-THSSSIRTFGVDKARNSYKSSDVEPKVSESSDSEKIISPLPLD 122

Query: 122 VNEDGKYFDKKTKDGITESSSSAMETKT-KRDYKEPWDYQNSYYPTTLPLRMPYSGDPER 181
                     K   G        + T+T K++YKEPWDY +SYYP TLPLR PYSGDPE 
Sbjct: 123 ----------KAGTGAALEEVRDLSTQTVKKEYKEPWDYNHSYYPITLPLRPPYSGDPEL 182

Query: 182 LDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEK 241
           L+EAEFG+   N+EYDE ++ PA +LGL++EN E   +FFQLPA LP+ KQS+++ GKEK
Sbjct: 183 LNEAEFGEAARNKEYDETAIHPASELGLMEENGERKMFFFQLPATLPMVKQSASSKGKEK 242

Query: 242 VGNSRSSNST-SSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQH 301
           VG+S SS S  ++S    L++L  GCMGK+L+YKSGA+KL+LGD L+DVS GS+    Q+
Sbjct: 243 VGSSTSSGSVGTTSKGSKLEELHGGCMGKMLVYKSGAVKLKLGDTLFDVSPGSDFQVSQN 302

Query: 302 VVAINSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           VVAIN+ E +C  LG++   VVV+PD+ S+LNS+ +L
Sbjct: 303 VVAINTAEKECNVLGELNKLVVVSPDVCSVLNSIIDL 328

[Close]

BLAST of CSPI04G04000 vs. NCBI nr
Match: gi|643706312|gb|KDP22444.1| (hypothetical protein JCGZ_26275 [Jatropha curcas])

HSP 1 Score: 283.5 bits (724), Expect = 4.8e-73
Identity = 167/341 (48.97%), Postives = 221/341 (64.81%), Query Frame = 1


Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDG---EGYVAQTRYLLRRANENLG 60
           M    PSP  RK KF PK+  +++P P  V K+E  D    E   AQ + L+R+ NENL 
Sbjct: 1   MDQEQPSPTPRKAKFTPKAPPQRKPIPT-VTKSEVNDSNNDEDEAAQAQKLMRKFNENLR 60

Query: 61  KRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENG--SRKNDIEPEVDEDEEFVLPV 120
           ++  KVEKKSSVQVAFGPGA + S+SIR YGVP  EN   S + DI+   ++D   V+  
Sbjct: 61  RKVPKVEKKSSVQVAFGPGA-APSTSIRKYGVPGCENAGSSSRLDIKDSDNDDRRIVVSS 120

Query: 121 ARDVNEDG--KYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSG 180
                EDG  KY  +         +   +  K K+DY+EPWDY ++YYPTTLPLR PYSG
Sbjct: 121 LSTAEEDGASKYHSE---------AIGVLPLKIKKDYREPWDYNHTYYPTTLPLRRPYSG 180

Query: 181 DPERLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTAT 240
           DPE L+E EFG+     EY+EN++ PA DLGLL+E+ +   +FFQLP++LPL K+S+   
Sbjct: 181 DPELLNEEEFGEAARKLEYNENTIKPASDLGLLEESDKERLFFFQLPSKLPLVKRSAITK 240

Query: 241 GKEKVGNSRSSNSTSSSDLD-DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCS 300
           GKEKV  S  S  TS+   +   + LS G MGK+L+Y+SGA+K++LGD LYDVS GS+C+
Sbjct: 241 GKEKVEGSTPSQGTSALKKESSFQGLSEGYMGKMLVYRSGAVKIKLGDTLYDVSPGSDCT 300

Query: 301 FLQHVVAINSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           F Q ++AI+    QCC +G +  R VVTPD+ SLLNSV NL
Sbjct: 301 FAQDLMAIDIASKQCCTIGKLRKRAVVTPDVDSLLNSVINL 330

[Close]

BLAST of CSPI04G04000 vs. NCBI nr
Match: gi|802769842|ref|XP_012090466.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc4 isoform X1 [Jatropha curcas])

HSP 1 Score: 283.5 bits (724), Expect = 4.8e-73
Identity = 167/341 (48.97%), Postives = 221/341 (64.81%), Query Frame = 1


Query: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDG---EGYVAQTRYLLRRANENLG 60
           M    PSP  RK KF PK+  +++P P  V K+E  D    E   AQ + L+R+ NENL 
Sbjct: 20  MDQEQPSPTPRKAKFTPKAPPQRKPIPT-VTKSEVNDSNNDEDEAAQAQKLMRKFNENLR 79

Query: 61  KRANKVEKKSSVQVAFGPGAESTSSSIRTYGVPKVENG--SRKNDIEPEVDEDEEFVLPV 120
           ++  KVEKKSSVQVAFGPGA + S+SIR YGVP  EN   S + DI+   ++D   V+  
Sbjct: 80  RKVPKVEKKSSVQVAFGPGA-APSTSIRKYGVPGCENAGSSSRLDIKDSDNDDRRIVVSS 139

Query: 121 ARDVNEDG--KYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSG 180
                EDG  KY  +         +   +  K K+DY+EPWDY ++YYPTTLPLR PYSG
Sbjct: 140 LSTAEEDGASKYHSE---------AIGVLPLKIKKDYREPWDYNHTYYPTTLPLRRPYSG 199

Query: 181 DPERLDEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTAT 240
           DPE L+E EFG+     EY+EN++ PA DLGLL+E+ +   +FFQLP++LPL K+S+   
Sbjct: 200 DPELLNEEEFGEAARKLEYNENTIKPASDLGLLEESDKERLFFFQLPSKLPLVKRSAITK 259

Query: 241 GKEKVGNSRSSNSTSSSDLD-DLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCS 300
           GKEKV  S  S  TS+   +   + LS G MGK+L+Y+SGA+K++LGD LYDVS GS+C+
Sbjct: 260 GKEKVEGSTPSQGTSALKKESSFQGLSEGYMGKMLVYRSGAVKIKLGDTLYDVSPGSDCT 319

Query: 301 FLQHVVAINSEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 334
           F Q ++AI+    QCC +G +  R VVTPD+ SLLNSV NL
Sbjct: 320 FAQDLMAIDIASKQCCTIGKLRKRAVVTPDVDSLLNSVINL 349

The following BLAST results are available for this feature:

BLAST of CSPI04G04000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPC4_MOUSE	9.3e-08	33.86	DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus GN=Polr3d PE=2 SV=2	[more]
RPC4_HUMAN	1.6e-07	33.33	DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens GN=POLR3D PE=1 SV=2	[more]
RPC4_BOVIN	2.1e-07	38.14	DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus GN=POLR3D PE=2 SV=1	[more]
RPC4_YEAST	3.0e-06	30.17	DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain...	[more]

BLAST of CSPI04G04000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ61_CUCSA	5.2e-183	99.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022870 PE=4 SV=1	[more]
A0A067JSB7_JATCU	3.4e-73	48.97	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26275 PE=4 SV=1	[more]
B9R9V4_RICCO	5.9e-70	48.21	DNA binding protein, putative OS=Ricinus communis GN=RCOM_1500880 PE=4 SV=1	[more]
A0A061FZZ6_THECC	9.5e-68	47.48	DNA binding protein, putative isoform 2 OS=Theobroma cacao GN=TCM_014896 PE=4 SV...	[more]
A0A058ZWX9_EUCGR	1.0e-66	45.15	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00171 PE=4 SV=1	[more]

BLAST of CSPI04G04000 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25180.1	2.5e-43	37.43	RNA polymerase III RPC4	[more]
AT5G09380.1	1.1e-35	41.79	RNA polymerase III RPC4	[more]

BLAST of CSPI04G04000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458357\|ref\|XP_004146914.1\|	7.5e-183	99.70	PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis sativus]	[more]
gi\|659107882\|ref\|XP_008453902.1\|	2.8e-174	95.51	PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like [Cucumis melo]	[more]
gi\|1009122078\|ref\|XP_015877810.1\|	1.2e-76	49.26	PREDICTED: uncharacterized protein LOC107414218 [Ziziphus jujuba]	[more]
gi\|643706312\|gb\|KDP22444.1\|	4.8e-73	48.97	hypothetical protein JCGZ_26275 [Jatropha curcas]	[more]
gi\|802769842\|ref\|XP_012090466.1\|	4.8e-73	48.97	PREDICTED: DNA-directed RNA polymerase III subunit rpc4 isoform X1 [Jatropha cur...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007811	RPC4

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005666	DNA-directed RNA polymerase III complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006383	transcription from RNA polymerase III promoter

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006383	transcription from RNA polymerase III promoter
cellular_component	GO:0005666	DNA-directed RNA polymerase III complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G04000.1	CSPI04G04000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PANTHER	PTHR13408	DNA-DIRECTED RNA POLYMERASE III	coord: 132..334 score: 8.8E-109coord: 7..115 score: 8.8E
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PFAM	PF05132	RNA_pol_Rpc4	coord: 215..323 score: 1.2
None	No IPR available	PANTHER	PTHR13408:SF3	SUBFAMILY NOT NAMED	coord: 132..334 score: 8.8E-109coord: 7..115 score: 8.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G04000	Cla010728	Watermelon (97103) v1	cpiwmB315
CSPI04G04000	Csa4G022870	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G04000	MELO3C017658	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G04000	ClCG07G016860	Watermelon (Charleston Gray)	cpiwcgB336
CSPI04G04000	Lsi07G001030	Bottle gourd (USVL1VR-Ls)	cpilsiB303
CSPI04G04000	MELO3C017658.2	Melon (DHL92) v3.6.1	cpimedB301
CSPI04G04000	CsaV3_4G004060	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G04000	Cla97C07G143860	Watermelon (97103) v2	cpiwmbB326
CSPI04G04000	Bhi01G002027	Wax gourd	cpiwgoB370
CSPI04G04000	Cucsa.094230	Cucumber (Gy14) v1	cgycpiB103
CSPI04G04000	CmaCh16G002040	Cucurbita maxima (Rimu)	cmacpiB337
CSPI04G04000	CmoCh16G002230	Cucurbita moschata (Rifu)	cmocpiB328
CSPI04G04000	Cp4.1LG14g05450	Cucurbita pepo (Zucchini)	cpecpiB220
CSPI04G04000	CsGy4G003920	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G04000	Carg16750	Silver-seed gourd	carcpiB0906

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G04000	Silver-seed gourd	carcpiB0408
CSPI04G04000	Cucurbita maxima (Rimu)	cmacpiB716
CSPI04G04000	Cucurbita moschata (Rifu)	cmocpiB708
CSPI04G04000	Cucurbita pepo (Zucchini)	cpecpiB398