Cp4.1LG14g05450 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g05450
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	DNA-directed RNA polymerase III subunit RPC4
Location	Cp4.1LG14 : 964478 .. 967340 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAGTTCTAAGATCCTCCTGGTCTAGGGTTCGAATCCTTCTTATTTTTCTTTTTCACCATTTTCCCCCTTTCCCTGCCCTTCGTCATCTTCAACCTCGAGCTGATGAAGAATCCCGATCCATCTCCTCCGCGCAGAAAGGTAACCCAATTTTCAGGTTTCAGCTAACTATTTTTTTTGCTTCCTCTTCAACTTGAACTCGATTTAGATCTAAACCCTTCTCCATCTCTCTGCCTCTCTGTTCCTTCTGCAGATCAAATTCGCCCCAAAATCCACACCGCGCAGAAGGCCACCCCCCGCTCCAAAAACGTACTCCTCTGATCTCATCTTCTTCCACATTTTGGTCTCTGAATTTGCACAAAGTTTCGGTCAACTTGTTCTTATCCTTAATTTGTTTGGCGAATTACAGTGAAGACGAAGATGTAGTTGGTAATGTTGCTCAAACTCGCTACCTCCTACGCCGTGCCACTGTAAGTTCCTTTGTTCTTCTATGATTTTCGAATTCTTCTGTACATTTTTCGTTTGCTGTTTAGACGATTTTCTGTATTTCTGACTTCAGCTTTGGAGGATTGAAATTTGTGGATAAAACATTTGAATTTCTTCCCCAGTTTTTAGCAACGCTTTTACTACAAGTTTCTGTTTGGTTCCCGAGAAAAAAATTTGGGATGGAAATGAATTCGTTTTCGAGCAGCGTTTGGGGTTTCTCATTTCTTGCGAGATGAAAATAAAATTCATTTAGGAGAATAATTTGTGTGATTAGTGGACACGTGTATGGTTCAGATTAACATTTTTCTTAAACTAACTTTTAACACCGTCTGATCTGACCACGTGGCATTCACTAATGTTAGTTCATGAACTGTTCGAATTCATTTGATTCTTTCTCCACTTTGTAGGAGAATCTTGGAAAACGAGGGAACAAAGTCGAGAAAAAATGTGAAGTCCTTTTCGAAATCCATGTATTTTTTTCAATGAAATTTTGACGGTCTGATCCCATATGAACAGATTTGTTTTCTTGTTCATGATCAAGATTGTTGCATTACCTTTTCCTCTATTTTGATATCCATATCTGCAGCTTCTGTGCAAGTTGCATTCGGGCCTGGTGCGGCATCGGCATCAGAATCATCTTCTATTAGAACGTATGGAGTCCCCAAAATCGGAAACAGTAGCAGAAAAAATGATAATGAGCCTGAATCTGCTGAAGATGAGGAACTTATCTCGCCTCTGCCTATGGATTTCGAAGAATATGGGAAAAATCTCAATGAAAAAACAGAGGATGCAATCAAGAACACGAAGGATTACAAAGAACCATGGGTAATTTCTCTTTCTCCATCTCACTTTTGGCGCGCGCACACACAGATTAGCGTCCTGATTTCATGATATTTTCTCAGGATTACCATAATTCTTACTATCCTACTACGCTTCCTTTACGGATGCCTTACTCTGGAGATCCTGGTATGTCTTTATTCTCTCGAAGTCACTCAAAATCTTATAATCAATCTTGAAAACGGAAGCGGACCTTATTGAGTTCTTAGATTAGGGCTTGTTTATCTCTGCTGATATGAACCTGTTACCTTGGTGAACGATGATTCTGGGTTTGTTCTGTAATTGCTAACTCTATTGCCTCTTGTTGGGGTTTAGAATTGCTTGATGAAGCTGAGTTCGGGCAGGATGTGATGGATAGGGAGTGTGATGAGAACTCTAATATACCTGCCTTGGATCTTGGATTGCTGGTTGGTGAATGCATTGATAAATGTGGCTTGAAATATATGAATACATGCAGGATCTAGTTATAATATGGTGGTGTTTTGATGCTGCAGGATGAAAATTCTGAGAATACTAGGTACTTTTTTCAGCTTCCTGCTCGTCTTCCTTTTCCCAAACGATCATCTACTTCAACAGGAAAGGAGAAGGTAGGAAACTTGAGATCTTCAATCAGCACTGGCTCATCAGAGCTGGGCGATTTACAGAACCTGCCCGGTGGATATATGGGGAAACTACTGATATACAAGAGTGGAGCTGTTAAGTTGAGGCTGGGAGATACACTTTACGACGTGAGTAATGTCGTTAGCGTTCTAAGATCGAAATCAAGCATTGTTAATGTAACAACCCAAGCCCGACTAATAGATATTGTCCGCTTTGGCTCGTTATGTATAGTTGTCAGCATTACGGTTTTTAAACGGGTCTAAGCATTCCCTCTCCAACCGATGTGGAATCTCACAATCCACTCCTCTTTGGGGTCCAGCTTTCTTACTAGCATACCACCCGGTGTCTGGCTCTGATATCATTTGTAACGAACTGTGAGGCTGATAGCGATACATAACTAGACAAAGTGGACAATATCTACTGACGGCGGGCTTGAACGGTTATATGTTACCGTCCTTGTTTAGAGATCATATATAGTGATTTACTCTGGTTCTCTTTTTGGGGCTGTTGCAGGTTTCTTCTGGTTTAGACTGCAGTTTTCTTCAACATGTTGTGGCGATCAACACCGACAAGGGACAGTGCTGCGATCTCGGAGAAATTGGCAAACGAGTCGTGGTGACACCAGATATAGGTTCCCTCTTGAATTCAATGACTGACTTGGGATGAACTTGAAGAGCAGGCCTGCGGATAGAACAACCATCTCAAAAGGAACAGGAAAGAACGGCTGATCCATACAATGTCAAGATGGATATGACCAATGGGTGTGTACTGAAAATGCTCAGTAGGTAAGGAAGTTGCGTTTTGCTGCTCTTAGGATGTCACATTATTCACCAAACTGCCTCCTTTGTTAATCCAATGCAACAAGAACGTGTTCATTCTCTCTAATTTCTAGCTGTGTAGTGGGTTGTCATTAAACAATGTGGATAACACTGTAAATGTTTT

mRNA sequence

TCAGTTCTAAGATCCTCCTGGTCTAGGGTTCGAATCCTTCTTATTTTTCTTTTTCACCATTTTCCCCCTTTCCCTGCCCTTCGTCATCTTCAACCTCGAGCTGATGAAGAATCCCGATCCATCTCCTCCGCGCAGAAAGATCAAATTCGCCCCAAAATCCACACCGCGCAGAAGGCCACCCCCCGCTCCAAAAACTGAAGACGAAGATGTAGTTGGTAATGTTGCTCAAACTCGCTACCTCCTACGCCGTGCCACTGAGAATCTTGGAAAACGAGGGAACAAAGTCGAGAAAAAATCTTCTGTGCAAGTTGCATTCGGGCCTGGTGCGGCATCGGCATCAGAATCATCTTCTATTAGAACGTATGGAGTCCCCAAAATCGGAAACAGTAGCAGAAAAAATGATAATGAGCCTGAATCTGCTGAAGATGAGGAACTTATCTCGCCTCTGCCTATGGATTTCGAAGAATATGGGAAAAATCTCAATGAAAAAACAGAGGATGCAATCAAGAACACGAAGGATTACAAAGAACCATGGGATTACCATAATTCTTACTATCCTACTACGCTTCCTTTACGGATGCCTTACTCTGGAGATCCTGAATTGCTTGATGAAGCTGAGTTCGGGCAGGATGTGATGGATAGGGAGTGTGATGAGAACTCTAATATACCTGCCTTGGATCTTGGATTGCTGGATGAAAATTCTGAGAATACTAGGTACTTTTTTCAGCTTCCTGCTCGTCTTCCTTTTCCCAAACGATCATCTACTTCAACAGGAAAGGAGAAGGTAGGAAACTTGAGATCTTCAATCAGCACTGGCTCATCAGAGCTGGGCGATTTACAGAACCTGCCCGGTGGATATATGGGGAAACTACTGATATACAAGAGTGGAGCTGTTTCTTCTGGTTTAGACTGCAGTTTTCTTCAACATGTTGTGGCGATCAACACCGACAAGGGACAGTGCTGCGATCTCGGAGAAATTGGCAAACGAGTCGTGGTGACACCAGATATAGGTTCCCTCTTGAATTCAATGACTGACTTGGGATGAACTTGAAGAGCAGGCCTGCGGATAGAACAACCATCTCAAAAGGAACAGGAAAGAACGGCTGATCCATACAATGTCAAGATGGATATGACCAATGGGTGTGTACTGAAAATGCTCAGTAGGTAAGGAAGTTGCGTTTTGCTGCTCTTAGGATGTCACATTATTCACCAAACTGCCTCCTTTGTTAATCCAATGCAACAAGAACGTGTTCATTCTCTCTAATTTCTAGCTGTGTAGTGGGTTGTCATTAAACAATGTGGATAACACTGTAAATGTTTT

Coding sequence (CDS)

ATGAAGAATCCCGATCCATCTCCTCCGCGCAGAAAGATCAAATTCGCCCCAAAATCCACACCGCGCAGAAGGCCACCCCCCGCTCCAAAAACTGAAGACGAAGATGTAGTTGGTAATGTTGCTCAAACTCGCTACCTCCTACGCCGTGCCACTGAGAATCTTGGAAAACGAGGGAACAAAGTCGAGAAAAAATCTTCTGTGCAAGTTGCATTCGGGCCTGGTGCGGCATCGGCATCAGAATCATCTTCTATTAGAACGTATGGAGTCCCCAAAATCGGAAACAGTAGCAGAAAAAATGATAATGAGCCTGAATCTGCTGAAGATGAGGAACTTATCTCGCCTCTGCCTATGGATTTCGAAGAATATGGGAAAAATCTCAATGAAAAAACAGAGGATGCAATCAAGAACACGAAGGATTACAAAGAACCATGGGATTACCATAATTCTTACTATCCTACTACGCTTCCTTTACGGATGCCTTACTCTGGAGATCCTGAATTGCTTGATGAAGCTGAGTTCGGGCAGGATGTGATGGATAGGGAGTGTGATGAGAACTCTAATATACCTGCCTTGGATCTTGGATTGCTGGATGAAAATTCTGAGAATACTAGGTACTTTTTTCAGCTTCCTGCTCGTCTTCCTTTTCCCAAACGATCATCTACTTCAACAGGAAAGGAGAAGGTAGGAAACTTGAGATCTTCAATCAGCACTGGCTCATCAGAGCTGGGCGATTTACAGAACCTGCCCGGTGGATATATGGGGAAACTACTGATATACAAGAGTGGAGCTGTTTCTTCTGGTTTAGACTGCAGTTTTCTTCAACATGTTGTGGCGATCAACACCGACAAGGGACAGTGCTGCGATCTCGGAGAAATTGGCAAACGAGTCGTGGTGACACCAGATATAGGTTCCCTCTTGAATTCAATGACTGACTTGGGATGA

Protein sequence

MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDNEPESAEDEELISPLPMDFEEYGKNLNEKTEDAIKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPELLDEAEFGQDVMDRECDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSISTGSSELGDLQNLPGGYMGKLLIYKSGAVSSGLDCSFLQHVVAINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDLG

Homology

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BLAST of Cp4.1LG14g05450 vs. TrEMBL
Match: A0A0A0KZ61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022870 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.3e-122
Identity = 243/335 (72.54%), Postives = 267/335 (79.70%), Query Frame = 1


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRG 60
           MKN DPSPPRRK+KFAPKS+ R+RPPP P  KTEDED  G VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDNEPESAEDEELISPLPMD 120
           NKVEKKSSVQVAFGPGA S S  SSIRTYGVPK+ N SRKND EPE  EDEE + P+  D
Sbjct: 61  NKVEKKSSVQVAFGPGAESTS--SSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARD 120

Query: 121 FEEYGKNLNEKTEDAI----------KNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPELL 180
             E GK  ++KT+D I          K  +DYKEPWDY NSYYPTTLPLRMPYSGDPE L
Sbjct: 121 VNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERL 180

Query: 181 DEAEFGQDVMDRECDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKV 240
           DEAEFGQDVM+RE DENS IPALDLGLLDEN+E+T+YFFQLPARLP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKV 240

Query: 241 GNLRSSISTGSSELGDLQNLPGGYMGKLLIYKSGA-----------VSSGLDCSFLQHVV 300
           GN RSS ST SS+L DL+ L  G MGKLLIYKSGA           VSSG +CSFLQHVV
Sbjct: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVV 300

Query: 301 AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 313
           AINT++GQCCDLG+IG RVVVTPDI SLLNS+T+L
Sbjct: 301 AINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 333

[Close]

BLAST of Cp4.1LG14g05450 vs. TrEMBL
Match: A0A061FZZ6_THECC (DNA binding protein, putative isoform 2 OS=Theobroma cacao GN=TCM_014896 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.1e-65
Identity = 159/334 (47.60%), Postives = 208/334 (62.28%), Query Frame = 1


Query: 1   MKNPDPSPPRRKIKFAPKS--TPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRG 60
           M    PS  RRK++FAPK+  + RR      K+E  D  G  AQ +YLL R  EN  ++ 
Sbjct: 1   MDQDGPSSGRRKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQAQYLLGRFNENQTRQR 60

Query: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDNEPESAEDEE--LISPLP 120
            KVEKKSS Q++FGPGA S   S+ +R YG  + G S +  D+   S +D +  +I   P
Sbjct: 61  PKVEKKSSAQISFGPGAPS---SNLLRAYGSQRGGTSGKSTDSRQRSPDDNDGQIIGSFP 120

Query: 121 MDFEEYGKNLNEKTEDAI-----KNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPELLDEA 180
              +E   ++   + DAI     K  ++Y+EPWDYH++YYP TLPLR PYSGDPELLD+A
Sbjct: 121 SASKEDRTDIC--SSDAIEASAPKIKREYREPWDYHHTYYPITLPLRRPYSGDPELLDQA 180

Query: 181 EFGQDVMDRECDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNL 240
           EF  +   +E DE +  PA DLGLL+E  +   +FFQLPA LP  KR +++ GKEK  NL
Sbjct: 181 EF-VEAARKEYDEKTINPASDLGLLEEGEKGKMFFFQLPANLPVIKRLASTKGKEKAENL 240

Query: 241 RSSISTGSSELG-DLQNLPGGYMGKLLIYKSGA-----------VSSGLDCSFLQHVVAI 300
            SS   G+ + G  L+ LPGG+MGK+L+YKSGA           VS G DC F Q V A+
Sbjct: 241 GSSERFGALKKGCQLEELPGGFMGKMLVYKSGAVKLKLGETLYDVSPGSDCIFAQDVAAV 300

Query: 301 NTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDLG 314
           NT +  CC +GE+GKRVVVTPDI S+LNS+ DLG
Sbjct: 301 NTTEKHCCVIGELGKRVVVTPDISSVLNSVIDLG 328

[Close]

BLAST of Cp4.1LG14g05450 vs. TrEMBL
Match: B9R9V4_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1500880 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.0e-63
Identity = 156/330 (47.27%), Postives = 201/330 (60.91%), Query Frame = 1


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPP-PAPKTEDEDVVGN---VAQTRYLLRRATENLGK 60
           M +  PSP +RK+KF PK+  +RRP    PKTE   V  N     Q + L+R+  EN  +
Sbjct: 1   MDDEQPSPSQRKVKFTPKAPSQRRPRRTVPKTEVNGVDNNEDEAVQAQKLMRKFNENFRR 60

Query: 61  RGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDNEPESAEDEELISPLP 120
           +G +VEKKS+VQVAFGPGA S   S+SIRT+GV K  N       +    + + +IS L 
Sbjct: 61  QGPRVEKKSTVQVAFGPGATS---STSIRTFGVSKGENPVSSGIKDSTDDDGKIVISSLS 120

Query: 121 MDFEEYGKNLNEKTEDAI--KNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPELLDEAEFG 180
            D E+   N   +  DA+  K  KDY+EPWDY  +YYPTTLPLR PYSGDP LLDEAEFG
Sbjct: 121 TDKEDEIINCASEDIDALPLKIKKDYREPWDYDRTYYPTTLPLRRPYSGDPVLLDEAEFG 180

Query: 181 QDVMDRECDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKV-GNLRS 240
           +     E DE++  PA DL LL+E       FFQLPA+LP  KRS+++ GKEK  G++ S
Sbjct: 181 EAARKLEYDESTMNPASDLELLEECDTEKMIFFQLPAKLPLVKRSASAKGKEKAEGSIPS 240

Query: 241 SISTGSSELGDLQNLPGGYMGKLLIYKSGA-----------VSSGLDCSFLQHVVAINTD 300
                + +   L  L  GYMGK+L+Y+SGA           VS G DC F Q V+AINT 
Sbjct: 241 QGKNAAKKESSLDGLSAGYMGKMLVYRSGAVKLKLGDTLYDVSQGSDCMFAQDVMAINTA 300

Query: 301 KGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 313
              CC +GE+ KR VVTPD+ SLL+S+ +L
Sbjct: 301 AKHCCTIGELEKRAVVTPDVDSLLDSVVNL 327

[Close]

BLAST of Cp4.1LG14g05450 vs. TrEMBL
Match: A0A067JSB7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26275 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 6.6e-63
Identity = 155/336 (46.13%), Postives = 210/336 (62.50%), Query Frame = 1


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRP-PPAPKTE------DEDVVGNVAQTRYLLRRATEN 60
           M    PSP  RK KF PK+ P+R+P P   K+E      DED     AQ + L+R+  EN
Sbjct: 1   MDQEQPSPTPRKAKFTPKAPPQRKPIPTVTKSEVNDSNNDED---EAAQAQKLMRKFNEN 60

Query: 61  LGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVP---KIGNSSRKNDNEPESAEDEE 120
           L ++  KVEKKSSVQVAFGPGAA    S+SIR YGVP     G+SSR +  + ++ +   
Sbjct: 61  LRRKVPKVEKKSSVQVAFGPGAAP---STSIRKYGVPGCENAGSSSRLDIKDSDNDDRRI 120

Query: 121 LISPLPMDFEEYGKNLNEKTEDAI--KNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPELL 180
           ++S L    E+     + +    +  K  KDY+EPWDY+++YYPTTLPLR PYSGDPELL
Sbjct: 121 VVSSLSTAEEDGASKYHSEAIGVLPLKIKKDYREPWDYNHTYYPTTLPLRRPYSGDPELL 180

Query: 181 DEAEFGQDVMDRECDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKV 240
           +E EFG+     E +EN+  PA DLGLL+E+ +   +FFQLP++LP  KRS+ + GKEKV
Sbjct: 181 NEEEFGEAARKLEYNENTIKPASDLGLLEESDKERLFFFQLPSKLPLVKRSAITKGKEKV 240

Query: 241 -GNLRSSISTGSSELGDLQNLPGGYMGKLLIYKSGA-----------VSSGLDCSFLQHV 300
            G+  S  ++   +    Q L  GYMGK+L+Y+SGA           VS G DC+F Q +
Sbjct: 241 EGSTPSQGTSALKKESSFQGLSEGYMGKMLVYRSGAVKIKLGDTLYDVSPGSDCTFAQDL 300

Query: 301 VAINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 313
           +AI+    QCC +G++ KR VVTPD+ SLLNS+ +L
Sbjct: 301 MAIDIASKQCCTIGKLRKRAVVTPDVDSLLNSVINL 330

[Close]

BLAST of Cp4.1LG14g05450 vs. TrEMBL
Match: A5AXE6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022611 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 8.6e-63
Identity = 165/348 (47.41%), Postives = 214/348 (61.49%), Query Frame = 1


Query: 3   NPDPSPPRRKIKFAPKSTPRRRPP---PAPKTEDEDVVGNVAQTRYLLRRATENLGKRGN 62
           N   S   RK++FAPKS PRR+P    P P   +E+     AQ  YLLRR  E L ++G 
Sbjct: 4   NESSSVSPRKVRFAPKSPPRRKPKTTAPQPVVAEEEDEAKRAQ--YLLRRVNEKLRRQGP 63

Query: 63  KVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDNEPE-SAEDEELI---SPL 122
           KVEK SSVQV FGPGAA+ S++  IRT+GV + GNS + +  E + S  D E I   S  
Sbjct: 64  KVEKTSSVQVVFGPGAATPSDT--IRTFGVHRDGNSDKSSGMELKVSTPDHEEIAVSSXS 123

Query: 123 PMDFEEYGKNLNEKTEDAIKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPELLDEAEFGQ 182
               +E      + T+D+ +  K YKEPWDY +SYYPTTLPLR P+SGDPE+LDEAEFG+
Sbjct: 124 TTKPDETNGXFADATDDSAQIRKRYKEPWDYVHSYYPTTLPLRKPHSGDPEILDEAEFGE 183

Query: 183 DVMDRECDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGN----- 242
              + E DE +  PA +LGLL+E+ +   + FQLPA LP  K+S+++ GKE VGN     
Sbjct: 184 ASTNLEYDEKTINPASELGLLEESEKGRMFLFQLPANLPLVKQSASAKGKEIVGNSTSLE 243

Query: 243 -----------LRSSIST---GSSELG-DLQNLPGGYMGKLLIYKSGA-----------V 302
                       RSS+S+   G+SE    L++L GG+ GK+L+YKSGA           V
Sbjct: 244 GIYASAKGKQVARSSLSSKSIGTSEHSCRLEDLAGGHXGKMLVYKSGAIKLKLGEILYDV 303

Query: 303 SSGLDCSFLQHVVAINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 313
           S GLDC+ +Q VVAINT    C  LGE+GKRV+VTPD+ SLL+SM  L
Sbjct: 304 SPGLDCTCVQDVVAINTVDKHCYALGELGKRVIVTPDVDSLLDSMIAL 347

[Close]

BLAST of Cp4.1LG14g05450 vs. TAIR10
Match: AT4G25180.1 (AT4G25180.1 RNA polymerase III RPC4)

HSP 1 Score: 151.4 bits (381), Expect = 9.4e-37
Identity = 118/322 (36.65%), Postives = 162/322 (50.31%), Query Frame = 1


Query: 6   PSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEK 65
           P+PPR          P RR P AP   TE E+   N+  +R   RR    +G+R     K
Sbjct: 14  PNPPR----------PSRRLPIAPTSNTEAEEDEENIKASRQFDRRI---VGRRPKTETK 73

Query: 66  KSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDNEPESAEDEELISPLPMDFEEYG 125
            SS +VAF P  +  +    IR++GVPK  +    + N    A     +S +    E+  
Sbjct: 74  ASSPEVAFQPSLSPLA----IRSFGVPKEDDKPNSDVNPSSPASILPAVSSVTAAQED-- 133

Query: 126 KNLNEKTEDAIKNT-KDYKEPWDYHNSYYPTTLPLRMPYSGDPELLDEAEFGQDVMDREC 185
               E+  + +  T  DY EPWDY NSYYPT LPLR P SGD ELLD+ EFG+   +R+ 
Sbjct: 134 ---GEEVHNFVTRTGDDYVEPWDYRNSYYPTVLPLRKPNSGDIELLDQEEFGEVAKNRDY 193

Query: 186 DENSNIPALDLGLLD-ENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSISTGSSE 245
           DEN+   A +LGL   ++S+   + F++P  LP  K+++ +T K  V    S IS     
Sbjct: 194 DENTINSAEELGLTSVQHSKKQMFIFKIPDCLPVVKQTTGATTKRSVREYSSGIS----- 253

Query: 246 LGDLQNLPGGYMGKLLIYKSGA-----------VSSGLDCSFLQHVVAINTDKGQCCDLG 305
               + LP G+MGK+L+YKSGA           VS G        VVAI+     C  +G
Sbjct: 254 -NPFEGLPEGFMGKMLVYKSGAVKLKVGDALFDVSPGPGTKIPNDVVAIDIKGRNCSRIG 307

Query: 306 EIGKRVVVTPDIGSLLNSMTDL 313
              K V VTPD+ SLLN  +D+
Sbjct: 314 SSAKFVTVTPDVESLLNPASDM 307

[Close]

BLAST of Cp4.1LG14g05450 vs. TAIR10
Match: AT5G09380.1 (AT5G09380.1 RNA polymerase III RPC4)

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-35
Identity = 112/321 (34.89%), Postives = 159/321 (49.53%), Query Frame = 1


Query: 5   DPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKK 64
           +  PP RK+KFAPK+ P+R P P  K E  +   N AQ   LLRR  E   ++    +K 
Sbjct: 2   EQKPPVRKMKFAPKAPPKRVPKPEVKPEVVEDNSNSAQASELLRRVNERSLRKPKADKKV 61

Query: 65  SSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKND--NEPESAEDEELISPLPMDFEEY 124
            + QVA                  +  + NS+R N   N    A               Y
Sbjct: 62  PASQVA-----------------WLGGVVNSTRSNKYLNRSNGA---------------Y 121

Query: 125 GKNLNEKTEDAIKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPELLDEAEFGQDVMDREC 184
           G    ++ E        YKEPWDY+ SYYP TLP+R PY+GDPE+LD  EF Q     E 
Sbjct: 122 GSTSTQEIE--------YKEPWDYY-SYYPITLPMRRPYAGDPEVLDVEEFMQAGGHHED 181

Query: 185 DENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSISTGSSEL 244
             N+   A +LGL++++ E   +F +LP+    P  S+ +   E   N++  +     + 
Sbjct: 182 SLNT---AANLGLMEDSGEQKMFFMRLPS---VPLASTPTENLETRPNIKGPVE---KKT 241

Query: 245 GDLQNLPGGYMGKLLIYKSGAV-----------SSGLDCSFLQHVVAINTDKGQCCDLGE 304
            DL+ LP GYMGKLL+YKSGAV           S GL   F Q V+ +NT++  CC +G+
Sbjct: 242 VDLKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGD 272

Query: 305 IGKRVVVTPDIGSLLNSMTDL 313
           + K  V+TPDI S+L  + ++
Sbjct: 302 VYKHAVLTPDIDSILKDIENI 272

[Close]

BLAST of Cp4.1LG14g05450 vs. NCBI nr
Match: gi|449458357|ref|XP_004146914.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis sativus])

HSP 1 Score: 447.6 bits (1150), Expect = 1.8e-122
Identity = 243/335 (72.54%), Postives = 267/335 (79.70%), Query Frame = 1


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRG 60
           MKN DPSPPRRK+KFAPKS+ R+RPPP P  KTEDED  G VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDNEPESAEDEELISPLPMD 120
           NKVEKKSSVQVAFGPGA S S  SSIRTYGVPK+ N SRKND EPE  EDEE + P+  D
Sbjct: 61  NKVEKKSSVQVAFGPGAESTS--SSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARD 120

Query: 121 FEEYGKNLNEKTEDAI----------KNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPELL 180
             E GK  ++KT+D I          K  +DYKEPWDY NSYYPTTLPLRMPYSGDPE L
Sbjct: 121 VNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERL 180

Query: 181 DEAEFGQDVMDRECDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKV 240
           DEAEFGQDVM+RE DENS IPALDLGLLDEN+E+T+YFFQLPARLP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKV 240

Query: 241 GNLRSSISTGSSELGDLQNLPGGYMGKLLIYKSGA-----------VSSGLDCSFLQHVV 300
           GN RSS ST SS+L DL+ L  G MGKLLIYKSGA           VSSG +CSFLQHVV
Sbjct: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVV 300

Query: 301 AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 313
           AINT++GQCCDLG+IG RVVVTPDI SLLNS+T+L
Sbjct: 301 AINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 333

[Close]

BLAST of Cp4.1LG14g05450 vs. NCBI nr
Match: gi|659107882|ref|XP_008453902.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like [Cucumis melo])

HSP 1 Score: 447.6 bits (1150), Expect = 1.8e-122
Identity = 245/335 (73.13%), Postives = 265/335 (79.10%), Query Frame = 1


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRG 60
           MKN D SPPRRK+KFAPKS+ RRRPPP P  KTEDED  G VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDNEPESAEDEELISPLPMD 120
           NKVEKKSSVQVAFGPGA S S  SSIRTYGVPK+ N SRKND EPE  EDEE + P+ MD
Sbjct: 61  NKVEKKSSVQVAFGPGAESTS--SSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMD 120

Query: 121 FEEYGKNLNEKTEDAI----------KNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPELL 180
             E GK  ++KT+D I          K  +DYKEPWDY NSYYPTTLPLRMPYSGD E L
Sbjct: 121 VNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERL 180

Query: 181 DEAEFGQDVMDRECDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKV 240
           DEAEFGQD M+RE DENS IPALDLGL DEN+ENT+YFFQLPARLP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDAMNREYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKV 240

Query: 241 GNLRSSISTGSSELGDLQNLPGGYMGKLLIYKSGA-----------VSSGLDCSFLQHVV 300
           GN RSS ST SS+L DL+ L  G MGKLLIYKSGA           VSSG DCSFLQHVV
Sbjct: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVV 300

Query: 301 AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 313
           AINT+KGQCCDLG+IGKRVVVTPDI SLLNS+T+L
Sbjct: 301 AINTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNL 333

[Close]

BLAST of Cp4.1LG14g05450 vs. NCBI nr
Match: gi|1009122078|ref|XP_015877810.1| (PREDICTED: uncharacterized protein LOC107414218 [Ziziphus jujuba])

HSP 1 Score: 287.7 bits (735), Expect = 2.4e-74
Identity = 173/326 (53.07%), Postives = 224/326 (68.71%), Query Frame = 1


Query: 7   SPPRRKIKFAPKSTPRRRP-PPAPKTE--DEDVVGNVAQTRYLLRRATENLGKRGNKVEK 66
           S  R+K++FAPK  PRR+P PP PK E  DEDV     + + LLR+  ENL +RG++ EK
Sbjct: 8   STTRKKLRFAPKPPPRRKPRPPPPKKEAGDEDV-DEAKEAKSLLRQFNENLTRRGSRAEK 67

Query: 67  KSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDNEP---ESAEDEELISPLPMDFE 126
           KSSVQVAFGPGA   + SSSIRT+GV K  NS + +D EP   ES++ E++ISPLP+D  
Sbjct: 68  KSSVQVAFGPGA---THSSSIRTFGVDKARNSYKSSDVEPKVSESSDSEKIISPLPLDKA 127

Query: 127 EYGKNLNEKTEDAIKNTK-DYKEPWDYHNSYYPTTLPLRMPYSGDPELLDEAEFGQDVMD 186
             G  L E  + + +  K +YKEPWDY++SYYP TLPLR PYSGDPELL+EAEFG+   +
Sbjct: 128 GTGAALEEVRDLSTQTVKKEYKEPWDYNHSYYPITLPLRPPYSGDPELLNEAEFGEAARN 187

Query: 187 RECDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSISTGS 246
           +E DE +  PA +LGL++EN E   +FFQLPA LP  K+S++S GKEKVG+  SS S G+
Sbjct: 188 KEYDETAIHPASELGLMEENGERKMFFFQLPATLPMVKQSASSKGKEKVGSSTSSGSVGT 247

Query: 247 SELGD-LQNLPGGYMGKLLIYKSGA-----------VSSGLDCSFLQHVVAINTDKGQCC 306
           +  G  L+ L GG MGK+L+YKSGA           VS G D    Q+VVAINT + +C 
Sbjct: 248 TSKGSKLEELHGGCMGKMLVYKSGAVKLKLGDTLFDVSPGSDFQVSQNVVAINTAEKECN 307

Query: 307 DLGEIGKRVVVTPDIGSLLNSMTDLG 314
            LGE+ K VVV+PD+ S+LNS+ DLG
Sbjct: 308 VLGELNKLVVVSPDVCSVLNSIIDLG 329

[Close]

BLAST of Cp4.1LG14g05450 vs. NCBI nr
Match: gi|590671470|ref|XP_007038340.1| (DNA binding protein, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 159/334 (47.60%), Postives = 208/334 (62.28%), Query Frame = 1


Query: 1   MKNPDPSPPRRKIKFAPKS--TPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRG 60
           M    PS  RRK++FAPK+  + RR      K+E  D  G  AQ +YLL R  EN  ++ 
Sbjct: 1   MDQDGPSSGRRKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQAQYLLGRFNENQTRQR 60

Query: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDNEPESAEDEE--LISPLP 120
            KVEKKSS Q++FGPGA S   S+ +R YG  + G S +  D+   S +D +  +I   P
Sbjct: 61  PKVEKKSSAQISFGPGAPS---SNLLRAYGSQRGGTSGKSTDSRQRSPDDNDGQIIGSFP 120

Query: 121 MDFEEYGKNLNEKTEDAI-----KNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPELLDEA 180
              +E   ++   + DAI     K  ++Y+EPWDYH++YYP TLPLR PYSGDPELLD+A
Sbjct: 121 SASKEDRTDIC--SSDAIEASAPKIKREYREPWDYHHTYYPITLPLRRPYSGDPELLDQA 180

Query: 181 EFGQDVMDRECDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNL 240
           EF  +   +E DE +  PA DLGLL+E  +   +FFQLPA LP  KR +++ GKEK  NL
Sbjct: 181 EF-VEAARKEYDEKTINPASDLGLLEEGEKGKMFFFQLPANLPVIKRLASTKGKEKAENL 240

Query: 241 RSSISTGSSELG-DLQNLPGGYMGKLLIYKSGA-----------VSSGLDCSFLQHVVAI 300
            SS   G+ + G  L+ LPGG+MGK+L+YKSGA           VS G DC F Q V A+
Sbjct: 241 GSSERFGALKKGCQLEELPGGFMGKMLVYKSGAVKLKLGETLYDVSPGSDCIFAQDVAAV 300

Query: 301 NTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDLG 314
           NT +  CC +GE+GKRVVVTPDI S+LNS+ DLG
Sbjct: 301 NTTEKHCCVIGELGKRVVVTPDISSVLNSVIDLG 328

[Close]

BLAST of Cp4.1LG14g05450 vs. NCBI nr
Match: gi|255539829|ref|XP_002510979.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc4 isoform X1 [Ricinus communis])

HSP 1 Score: 251.9 bits (642), Expect = 1.5e-63
Identity = 156/330 (47.27%), Postives = 201/330 (60.91%), Query Frame = 1


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPP-PAPKTEDEDVVGN---VAQTRYLLRRATENLGK 60
           M +  PSP +RK+KF PK+  +RRP    PKTE   V  N     Q + L+R+  EN  +
Sbjct: 1   MDDEQPSPSQRKVKFTPKAPSQRRPRRTVPKTEVNGVDNNEDEAVQAQKLMRKFNENFRR 60

Query: 61  RGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDNEPESAEDEELISPLP 120
           +G +VEKKS+VQVAFGPGA S   S+SIRT+GV K  N       +    + + +IS L 
Sbjct: 61  QGPRVEKKSTVQVAFGPGATS---STSIRTFGVSKGENPVSSGIKDSTDDDGKIVISSLS 120

Query: 121 MDFEEYGKNLNEKTEDAI--KNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPELLDEAEFG 180
            D E+   N   +  DA+  K  KDY+EPWDY  +YYPTTLPLR PYSGDP LLDEAEFG
Sbjct: 121 TDKEDEIINCASEDIDALPLKIKKDYREPWDYDRTYYPTTLPLRRPYSGDPVLLDEAEFG 180

Query: 181 QDVMDRECDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKV-GNLRS 240
           +     E DE++  PA DL LL+E       FFQLPA+LP  KRS+++ GKEK  G++ S
Sbjct: 181 EAARKLEYDESTMNPASDLELLEECDTEKMIFFQLPAKLPLVKRSASAKGKEKAEGSIPS 240

Query: 241 SISTGSSELGDLQNLPGGYMGKLLIYKSGA-----------VSSGLDCSFLQHVVAINTD 300
                + +   L  L  GYMGK+L+Y+SGA           VS G DC F Q V+AINT 
Sbjct: 241 QGKNAAKKESSLDGLSAGYMGKMLVYRSGAVKLKLGDTLYDVSQGSDCMFAQDVMAINTA 300

Query: 301 KGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 313
              CC +GE+ KR VVTPD+ SLL+S+ +L
Sbjct: 301 AKHCCTIGELEKRAVVTPDVDSLLDSVVNL 327

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g05450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g05450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ61_CUCSA	1.3e-122	72.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022870 PE=4 SV=1	[more]
A0A061FZZ6_THECC	1.1e-65	47.60	DNA binding protein, putative isoform 2 OS=Theobroma cacao GN=TCM_014896 PE=4 SV...	[more]
B9R9V4_RICCO	1.0e-63	47.27	DNA binding protein, putative OS=Ricinus communis GN=RCOM_1500880 PE=4 SV=1	[more]
A0A067JSB7_JATCU	6.6e-63	46.13	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26275 PE=4 SV=1	[more]
A5AXE6_VITVI	8.6e-63	47.41	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022611 PE=4 SV=1	[more]

BLAST of Cp4.1LG14g05450 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25180.1	9.4e-37	36.65	RNA polymerase III RPC4	[more]
AT5G09380.1	1.0e-35	34.89	RNA polymerase III RPC4	[more]

BLAST of Cp4.1LG14g05450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458357\|ref\|XP_004146914.1\|	1.8e-122	72.54	PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis sativus]	[more]
gi\|659107882\|ref\|XP_008453902.1\|	1.8e-122	73.13	PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like [Cucumis melo]	[more]
gi\|1009122078\|ref\|XP_015877810.1\|	2.4e-74	53.07	PREDICTED: uncharacterized protein LOC107414218 [Ziziphus jujuba]	[more]
gi\|590671470\|ref\|XP_007038340.1\|	1.6e-65	47.60	DNA binding protein, putative isoform 2 [Theobroma cacao]	[more]
gi\|255539829\|ref\|XP_002510979.1\|	1.5e-63	47.27	PREDICTED: DNA-directed RNA polymerase III subunit rpc4 isoform X1 [Ricinus comm...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006383	transcription from RNA polymerase III promoter

Vocabulary: **Cellular Component**
Term	Definition
GO:0005666	DNA-directed RNA polymerase III complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed RNA polymerase activity
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR007811	RPC4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006383	transcription from RNA polymerase III promoter
cellular_component	GO:0005666	DNA-directed RNA polymerase III complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g05450.1	Cp4.1LG14g05450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PANTHER	PTHR13408	DNA-DIRECTED RNA POLYMERASE III	coord: 7..313 score: 6.0
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PFAM	PF05132	RNA_pol_Rpc4	coord: 204..302 score: 2.8
None	No IPR available	PANTHER	PTHR13408:SF3	SUBFAMILY NOT NAMED	coord: 7..313 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG14g05450	Cucsa.094230	Cucumber (Gy14) v1	cgycpeB0187
Cp4.1LG14g05450	CmaCh16G002040	Cucurbita maxima (Rimu)	cmacpeB344
Cp4.1LG14g05450	CmoCh16G002230	Cucurbita moschata (Rifu)	cmocpeB307
Cp4.1LG14g05450	Cla010728	Watermelon (97103) v1	cpewmB224
Cp4.1LG14g05450	Csa4G022870	Cucumber (Chinese Long) v2	cpecuB218
Cp4.1LG14g05450	MELO3C017658	Melon (DHL92) v3.5.1	cpemeB202
Cp4.1LG14g05450	ClCG07G016860	Watermelon (Charleston Gray)	cpewcgB211
Cp4.1LG14g05450	CSPI04G04000	Wild cucumber (PI 183967)	cpecpiB220
Cp4.1LG14g05450	Lsi07G001030	Bottle gourd (USVL1VR-Ls)	cpelsiB182
Cp4.1LG14g05450	MELO3C017658.2	Melon (DHL92) v3.6.1	cpemedB244
Cp4.1LG14g05450	CsaV3_4G004060	Cucumber (Chinese Long) v3	cpecucB0262
Cp4.1LG14g05450	Bhi01G002027	Wax gourd	cpewgoB0291
Cp4.1LG14g05450	CsGy4G003920	Cucumber (Gy14) v2	cgybcpeB484
Cp4.1LG14g05450	Carg16750	Silver-seed gourd	carcpeB1215

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG14g05450	Cucurbita pepo (Zucchini)	cpecpeB234
Cp4.1LG14g05450	Cucurbita pepo (Zucchini)	cpecpeB245
Cp4.1LG14g05450	Cucurbita maxima (Rimu)	cmacpeB715
Cp4.1LG14g05450	Cucurbita moschata (Rifu)	cmocpeB668
Cp4.1LG14g05450	Silver-seed gourd	carcpeB0523
Cp4.1LG14g05450	Silver-seed gourd	carcpeB0998