Carg16750 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16750
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DNA-directed RNA polymerase III subunit rpc4-like
Location	Cucurbita_argyrosperma_scaffold_087 : 306396 .. 309287 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCCTTCTCATTTTTCTTTTTCACCATTTTCCCTCTTTCCCTTCGTCATCTTCAACCTCAAGCTGATGAAGAATCCCGATCCATCTCCTCCGCGCAGAAAGGTAACCCAATTTTCAGGTTTCAGCTTACTATTTTTTTGCTTCCTCTTCAACTTGAACTCGATTTAGATCTAAACCCTTCTCCATCTCTCTGCCTCTCTGTTCCTTCTGCAGATCAAATTCGCCCCAAAATCCACACCGCGCAGAAGGCCACCCCCCGCTCCAAAAACGTACTCATCTGATCTCATCTTCTTCCACATTTTGGTCTCTGAATTTGCACAAAGTTACAGTCAACTTGTTCTTATCCTTAATTTGTTTGGCGAATTGCAGTGAAGACGAAGATGTAGTTGGTAATGTTGCTCAAACTCGCTACCTCTTACGCCGTGCGACTGTAAGTTCCTTTGTTCTTCTATGATTTTCGAATCCTTCTGTACATTTTTCGTTTGATGTTTAGACGATTTTCCGTCTTTCTGACTTCAGCTTTGGAGGATTGAAATTTGTGGATAAAACATTTGAATCTTTTCCCCAGTTTTTAGCAACTGTTTCACTACAACTTTCCGTTTGGTTCCCGAGAAAAAAAAAAAATTGGGATGGATATGAATCGTTTTCGAGCAGCGTTTGGGGTTTCTCATTTCTTGCGAGATGAAAATAAATTTCATTTAGGAGAATAATTTGTGTGATTAGTGGACACGTGTATGCCTCAGCTTTAACATTTTTCTTAAACTAACTTTTAACACCGTCTGATCTGACCACGTGGCATTCACTAATGTTAGTTCATGAACTGTTCGAATTCATTTGATTCTTTCTCCACTTTGTAGGAGAATCTTGGAAAACGAGGGAACAAAGTCGAGAAAAAATGTAAAAGTCCTTTTCGAAATTCATGTATTTTTTTCAATGAAATTTTGACGGTCTAATCCCATATGAACAGATTTGTTTTCTTGTTCATAATCAAGATTGTTGCATTACCTTTTCCTCTATTTTGATATCCATATCTGCAGCTTCTGTGCAAGTTGCATTCGGGCCTGGTGCGGCATCGGCATCAGAATCATCTTCTATTAGAACGTATGGAGTCCCCAAAATCGGAAACAGTAGCAGAAAAAAGGATATTGAGCCTGAATCTGCTGAAGATGAGGAACTTATCTTGCCTCCGCCTATGGATTTCGAAGAATATGGGAAAAATCTCAATGAAAAAACAGAGGATGCAACCAAGAACACGAAGGATTACAAAGAACCATGGGTAATTTCTCTTTCTCCATCTCACATTTGGCGCGCGCACACACAGATTAGCGTCCTGATTTCATGATATTTTCTCAGGATTACCATAATTCTTACTATCCTACTACGCTTCCTTTACGGATGCCTTACTCTGGAGATCCTGGTATGTCTTTATTCTCTTGAAGTCACTCAAAATCTTATAATCAATCTTGAAAACAGAAGCGGACCTTTATGAGTTCTTAGATTAGGGCTTGTTTATCTCTGCTGATATGAACCTCTTACCTTGGTGGACGATGATTCTGGGTTTGTTCTGTAATTGCTAACTCAATTGCCTCTTGTTGGGGTTTAGAAATGCTTGATGAAGCTGAGTTCGGGCAGGATGTGATGGATAGGGAGTATGATGAGAACTCTAGTATACCTGCCTTGGATCTTGGATTGCTGGTTGGTGAATGGATTGATAAATGTGGCTTGAAATATATTAATACATGCAGGATCTAGTTATAATATGGTGGTGTTTTGATGGTGCAGGATGAAAATTCTGAGAATACTAGGTACTTTTTTCAGCTTCCTGCTTGTCTTCCTTTTCCCAAACGATCATCTACTTCAACGGGAAAGGAGAAGGTAGGAAACTTGAGATCTTCAATCAGCACTGCCTCATCAGAGCTGGGCGATTTACAGAACCTGCCCGGTGGATATATGGGGAAACTACTGATATACAAGAGTGGAGCTGTTAAGTTGAGGCTGGGAGATACACTTTACGATGTGAGTAATGTCATTAGTGTTCTAAGATCGAAATCGAGAATTGTTAATGTAACAGCTTAAGCCCACCACTAGCAGATATTGTTTGCTTTGGCTCGTTATGTATCGTTGTCAGCCTCACGGTTTTTAAACGCGTCTATTAGAGCTAGAGGTTTTTACACTGAGGAATGCTTCGTTTCCCTCTCCAACCGACGTGGAATCTCACAATTCACTCCTCTTTGGGGCCAGCTTTCTTGCTAGCATACCACCCGGTGTCTGGCTCTGATATCATTTGTAACAAACCGTGAGGCTGATAGCGATACATAACTAGACAAAGTGGATAATATCTACTGACGGCGGGCTTGAACGGTTATATGTTACCGTCCTTGTTTAGAGATCATACATAGTGATTTGCTCTGGTTCTCTTTTTGGGGCTGTTGTAGGTTTCTTCTGGTTTAGACTGCAGTTTTCTTCAACATGTTGTGGCGATCAACACCGACAAGGGACAGTGCTGCGATCTCGGAGAAATTGGCAAACGAGTCGTGGTGACACCAGATATAGGTTCCCTCTTGAATTCAATGACTGACTTGGGATGAACTTGAAGAACAGGCCTGCGGATAGAACAACCATCTCAAAAGGAACAGGAAAGAACGGCTAATCCTTACAATGTCAAAATGGATATGACCAATGGCTGTGTACTGAAAATGCTCACTAGGTAAGGAAGTTGCGTTTCGCTGCTCTTAGGATGTCACATTATTCATCAAACTGCCTCCTTTGTTAATCCAATGCAGCAAGAACGTGTTCATTCTCTCTAATTTCTAGCTGTGTAGTAGTAAACAATGTGGATAACTGTAAATGTTTTTTTGTTTTCTTTTTTAATGGTAAGTTAAGCTATGCTCT

mRNA sequence

AATCCTTCTCATTTTTCTTTTTCACCATTTTCCCTCTTTCCCTTCGTCATCTTCAACCTCAAGCTGATGAAGAATCCCGATCCATCTCCTCCGCGCAGAAAGATCAAATTCGCCCCAAAATCCACACCGCGCAGAAGGCCACCCCCCGCTCCAAAAACTGAAGACGAAGATGTAGTTGGTAATGTTGCTCAAACTCGCTACCTCTTACGCCGTGCGACTGAGAATCTTGGAAAACGAGGGAACAAAGTCGAGAAAAAATCTTCTGTGCAAGTTGCATTCGGGCCTGGTGCGGCATCGGCATCAGAATCATCTTCTATTAGAACGTATGGAGTCCCCAAAATCGGAAACAGTAGCAGAAAAAAGGATATTGAGCCTGAATCTGCTGAAGATGAGGAACTTATCTTGCCTCCGCCTATGGATTTCGAAGAATATGGGAAAAATCTCAATGAAAAAACAGAGGATGCAACCAAGAACACGAAGGATTACAAAGAACCATGGGATTACCATAATTCTTACTATCCTACTACGCTTCCTTTACGGATGCCTTACTCTGGAGATCCTGAAATGCTTGATGAAGCTGAGTTCGGGCAGGATGTGATGGATAGGGAGTATGATGAGAACTCTAGTATACCTGCCTTGGATCTTGGATTGCTGGATGAAAATTCTGAGAATACTAGGTACTTTTTTCAGCTTCCTGCTTGTCTTCCTTTTCCCAAACGATCATCTACTTCAACGGGAAAGGAGAAGGTAGGAAACTTGAGATCTTCAATCAGCACTGCCTCATCAGAGCTGGGCGATTTACAGAACCTGCCCGGTGGATATATGGGGAAACTACTGATATACAAGAGTGGAGCTGTTAAGTTGAGGCTGGGAGATACACTTTACGATGTTTCTTCTGGTTTAGACTGCAGTTTTCTTCAACATGTTGTGGCGATCAACACCGACAAGGGACAGTGCTGCGATCTCGGAGAAATTGGCAAACGAGTCGTGGTGACACCAGATATAGGTTCCCTCTTGAATTCAATGACTGACTTGGGATGAACTTGAAGAACAGGCCTGCGGATAGAACAACCATCTCAAAAGGAACAGGAAAGAACGGCTAATCCTTACAATGTCAAAATGGATATGACCAATGGCTGTGTACTGAAAATGCTCACTAGGTAAGGAAGTTGCGTTTCGCTGCTCTTAGGATGTCACATTATTCATCAAACTGCCTCCTTTGTTAATCCAATGCAGCAAGAACGTGTTCATTCTCTCTAATTTCTAGCTGTGTAGTAGTAAACAATGTGGATAACTGTAAATGTTTTTTTGTTTTCTTTTTTAATGGTAAGTTAAGCTATGCTCT

Coding sequence (CDS)

ATGAAGAATCCCGATCCATCTCCTCCGCGCAGAAAGATCAAATTCGCCCCAAAATCCACACCGCGCAGAAGGCCACCCCCCGCTCCAAAAACTGAAGACGAAGATGTAGTTGGTAATGTTGCTCAAACTCGCTACCTCTTACGCCGTGCGACTGAGAATCTTGGAAAACGAGGGAACAAAGTCGAGAAAAAATCTTCTGTGCAAGTTGCATTCGGGCCTGGTGCGGCATCGGCATCAGAATCATCTTCTATTAGAACGTATGGAGTCCCCAAAATCGGAAACAGTAGCAGAAAAAAGGATATTGAGCCTGAATCTGCTGAAGATGAGGAACTTATCTTGCCTCCGCCTATGGATTTCGAAGAATATGGGAAAAATCTCAATGAAAAAACAGAGGATGCAACCAAGAACACGAAGGATTACAAAGAACCATGGGATTACCATAATTCTTACTATCCTACTACGCTTCCTTTACGGATGCCTTACTCTGGAGATCCTGAAATGCTTGATGAAGCTGAGTTCGGGCAGGATGTGATGGATAGGGAGTATGATGAGAACTCTAGTATACCTGCCTTGGATCTTGGATTGCTGGATGAAAATTCTGAGAATACTAGGTACTTTTTTCAGCTTCCTGCTTGTCTTCCTTTTCCCAAACGATCATCTACTTCAACGGGAAAGGAGAAGGTAGGAAACTTGAGATCTTCAATCAGCACTGCCTCATCAGAGCTGGGCGATTTACAGAACCTGCCCGGTGGATATATGGGGAAACTACTGATATACAAGAGTGGAGCTGTTAAGTTGAGGCTGGGAGATACACTTTACGATGTTTCTTCTGGTTTAGACTGCAGTTTTCTTCAACATGTTGTGGCGATCAACACCGACAAGGGACAGTGCTGCGATCTCGGAGAAATTGGCAAACGAGTCGTGGTGACACCAGATATAGGTTCCCTCTTGAATTCAATGACTGACTTGGGATGA

Protein sequence

MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDLG

Homology

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BLAST of Carg16750 vs. NCBI nr
Match: XP_022922968.1 (DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita moschata])

HSP 1 Score: 614.0 bits (1582), Expect = 2.9e-172
Identity = 310/324 (95.68%), Postives = 310/324 (95.68%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
           MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK
Sbjct: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60

Query: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120
           VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE
Sbjct: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120

Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
           EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180

Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
           EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLR        
Sbjct: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRXXXXXXXX 240

Query: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
                 NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Sbjct: 241 XXXXXXNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300

Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 325
           GEIGKRVVVTPDIGSLLNSMTDLG
Sbjct: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324

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BLAST of Carg16750 vs. NCBI nr
Match: XP_023551929.1 (DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 588.2 bits (1515), Expect = 1.7e-164
Identity = 300/324 (92.59%), Postives = 302/324 (93.21%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
           MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK
Sbjct: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60

Query: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120
           VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK D EPESAEDEELI P PMDFE
Sbjct: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDNEPESAEDEELISPLPMDFE 120

Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
           EYGKNLNEKTEDA KNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPE+LDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDAIKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPELLDEAEFGQDVMDR 180

Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
           E DENS+IPALDLGLLDENSENTRYFFQLPA LPFPKRSSTSTGKEKVGNL         
Sbjct: 181 ECDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLXXXXXXXXX 240

Query: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
                 NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Sbjct: 241 XXXXXXNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300

Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 325
           GEIGKRVVVTPDIGSLLNSMTDLG
Sbjct: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324

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BLAST of Carg16750 vs. NCBI nr
Match: XP_022985496.1 (DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita maxima])

HSP 1 Score: 573.5 bits (1477), Expect = 4.4e-160
Identity = 294/324 (90.74%), Postives = 299/324 (92.28%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
           MKNPDPSPPRRKIKFAPKSTPRRRP   PKTEDEDV GNVAQTRYLLRRATENLGKRGNK
Sbjct: 1   MKNPDPSPPRRKIKFAPKSTPRRRPXXXPKTEDEDVDGNVAQTRYLLRRATENLGKRGNK 60

Query: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120
           VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK DIEPESAEDEELILP P+DFE
Sbjct: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEELILPLPLDFE 120

Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
           EYGKNLNEKTEDATKNTKDYKEPW+ HNSYYPTTLPLRMP+SGDPEMLDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDATKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEFGQDVMDR 180

Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
           EYDENS+IPALDLGLLDENSENTRYFFQLPA LPFPKRSSTSTGKEKVGNL         
Sbjct: 181 EYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLXXXXXXXXX 240

Query: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
                 NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQC DL
Sbjct: 241 XXXXXXNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCFDL 300

Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 325
           G+IGKRVVVTPDIGSLLNS TDLG
Sbjct: 301 GDIGKRVVVTPDIGSLLNSTTDLG 324

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BLAST of Carg16750 vs. NCBI nr
Match: XP_004146914.1 (PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis sativus] >KGN53151.1 hypothetical protein Csa_4G022870 [Cucumis sativus])

HSP 1 Score: 445.3 bits (1144), Expect = 1.8e-121
Identity = 240/335 (71.64%), Postives = 263/335 (78.51%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAP--KSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRG 60
           MKN DPSPPRRK+KFAP                   D  G VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNSDPSPPRRKVKFAPXXXXXXXXXXXXXXXXXXXDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMD 120
           NKVEKKSSVQVAFGPGA S   SSSIRTYGVPK+ N SRK DIEPE  EDEE +LP   D
Sbjct: 61  NKVEKKSSVQVAFGPGAEST--SSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARD 120

Query: 121 FEEYGKNLNEKTEDA----------TKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEML 180
             E GK  ++KT+D           TK  +DYKEPWDY NSYYPTTLPLRMPYSGDPE L
Sbjct: 121 VNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERL 180

Query: 181 DEAEFGQDVMDREYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKV 240
           DEAEFGQDVM+REYDENS IPALDLGLLDEN+E+T+YFFQLPA LP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKV 240

Query: 241 GNLRSSISTASSELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV 300
           GN RSS ST+SS+L DL+ L  G MGKLLIYKSGA+KLRLGD LYDVSSG +CSFLQHVV
Sbjct: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVV 300

Query: 301 AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 324
           AINT++GQCCDLG+IG RVVVTPDI SLLNS+T+L
Sbjct: 301 AINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 333

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BLAST of Carg16750 vs. NCBI nr
Match: XP_008453902.1 (PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo])

HSP 1 Score: 433.7 bits (1114), Expect = 5.4e-118
Identity = 227/299 (75.92%), Postives = 246/299 (82.27%), Query Frame = 0


Query: 35  DVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGN 94
           D  G VAQTRYLLRRA ENLGKR NKVEKKSSVQVAFGPGA S   SSSIRTYGVPK+ N
Sbjct: 37  DGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAEST--SSSIRTYGVPKVEN 96

Query: 95  SSRKKDIEPESAEDEELILPPPMDFEEYGKNLNEKTED----------ATKNTKDYKEPW 154
            SRK DIEPE  EDEE +LP  MD  E GK  ++KT+D           TK  +DYKEPW
Sbjct: 97  GSRKNDIEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPW 156

Query: 155 DYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENSENTR 214
           DY NSYYPTTLPLRMPYSGD E LDEAEFGQD M+REYDENS IPALDLGL DEN+ENT+
Sbjct: 157 DYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPALDLGLQDENTENTK 216

Query: 215 YFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLQNLPGGYMGKLLIYKSGAV 274
           YFFQLPA LP PK+SST+TGKEKVGN RSS ST+SS+L DL+ L  G MGKLLIYKSGA+
Sbjct: 217 YFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAI 276

Query: 275 KLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 324
           KLRLGD LYDVSSG DCSFLQHVVAINT+KGQCCDLG+IGKRVVVTPDI SLLNS+T+L
Sbjct: 277 KLRLGDILYDVSSGSDCSFLQHVVAINTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNL 333

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BLAST of Carg16750 vs. TAIR10
Match: AT4G25180.1 (RNA polymerase III RPC4)

HSP 1 Score: 188.3 bits (477), Expect = 7.2e-48
Identity = 128/323 (39.63%), Postives = 174/323 (53.87%), Query Frame = 0


Query: 5   DPSPPRRKIKFAPK-STPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRGNKV 64
           D    + K +F P    P RR P AP   TE E+   N+  +R   RR    +G+R    
Sbjct: 2   DSGEQKSKRRFQPNPPRPSRRLPIAPTSNTEAEEDEENIKASRQFDRRI---VGRRPKTE 61

Query: 65  EKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFEE 124
            K SS +VAF P  +      +IR++GVPK  +     D+ P S      ILP       
Sbjct: 62  TKASSPEVAFQPSLSPL----AIRSFGVPK-EDDKPNSDVNPSSPAS---ILPAVSSVTA 121

Query: 125 YGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDRE 184
             ++  E     T+   DY EPWDY NSYYPT LPLR P SGD E+LD+ EFG+   +R+
Sbjct: 122 AQEDGEEVHNFVTRTGDDYVEPWDYRNSYYPTVLPLRKPNSGDIELLDQEEFGEVAKNRD 181

Query: 185 YDENSSIPALDLGLLD-ENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 244
           YDEN+   A +LGL   ++S+   + F++P CLP  K+++ +T K  V    S IS    
Sbjct: 182 YDENTINSAEELGLTSVQHSKKQMFIFKIPDCLPVVKQTTGATTKRSVREYSSGIS---- 241

Query: 245 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 304
                + LP G+MGK+L+YKSGAVKL++GD L+DVS G        VVAI+     C  +
Sbjct: 242 --NPFEGLPEGFMGKMLVYKSGAVKLKVGDALFDVSPGPGTKIPNDVVAIDIKGRNCSRI 301

Query: 305 GEIGKRVVVTPDIGSLLNSMTDL 324
           G   K V VTPD+ SLLN  +D+
Sbjct: 302 GSSAKFVTVTPDVESLLNPASDM 307

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BLAST of Carg16750 vs. TAIR10
Match: AT5G09380.1 (RNA polymerase III RPC4)

HSP 1 Score: 159.5 bits (402), Expect = 3.6e-39
Identity = 112/319 (35.11%), Postives = 163/319 (51.10%), Query Frame = 0


Query: 5   DPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKK 64
           +  PP RK+KFAPK                +   N AQ   LLRR  E   ++    +K 
Sbjct: 2   EQKPPVRKMKFAPKXXXXXXXXXXXXXXXXEDNSNSAQASELLRRVNERSLRKPKADKKV 61

Query: 65  SSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFEEYGK 124
            + QVA+  G  +++ S+        K  N S                         YG 
Sbjct: 62  PASQVAWLGGVVNSTRSN--------KYLNRSN----------------------GAYGS 121

Query: 125 NLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDE 184
              ++ E        YKEPWDY+ SYYP TLP+R PY+GDPE+LD  EF Q      + E
Sbjct: 122 TSTQEIE--------YKEPWDYY-SYYPITLPMRRPYAGDPEVLDVEEFMQ---AGGHHE 181

Query: 185 NSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGD 244
           +S   A +LGL++++ E   +F +LP+    P  S+ +   E   N++  +     +  D
Sbjct: 182 DSLNTAANLGLMEDSGEQKMFFMRLPS---VPLASTPTENLETRPNIKGPV---EKKTVD 241

Query: 245 LQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDLGEIG 304
           L+ LP GYMGKLL+YKSGAVK++LG+ LYDVS GL   F Q V+ +NT++  CC +G++ 
Sbjct: 242 LKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGDVY 272

Query: 305 KRVVVTPDIGSLLNSMTDL 324
           K  V+TPDI S+L  + ++
Sbjct: 302 KHAVLTPDIDSILKDIENI 272

[Close]

BLAST of Carg16750 vs. Swiss-Prot
Match: sp|Q91WD1|RPC4_MOUSE (DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 4.1e-08
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 245 LQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCCDLG 304
           L +L  G +GKLLI KSG V+L LG    DV+ G  CSFLQ +V++   ++  G+   LG
Sbjct: 318 LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGEMTVLG 377

Query: 305 EIGKRVVVTPDIGSLLN 319
            +  ++V +PD  SLL+
Sbjct: 378 HVKHKLVCSPDFESLLD 394

[Close]

BLAST of Carg16750 vs. Swiss-Prot
Match: sp|P05423|RPC4_HUMAN (DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D PE=1 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 5.3e-08
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 245 LQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCCDLG 304
           L +L  G +GKLLI KSG V+L LG    DV+ G  CSFLQ +V++   ++  G+   LG
Sbjct: 318 LADLTEGQVGKLLIRKSGRVQLLLGKVTLDVTMGTACSFLQELVSVGLGDSRTGEMTVLG 377

Query: 305 EIGKRVVVTPDIGSLLN 319
            +  ++V +PD  SLL+
Sbjct: 378 HVKHKLVCSPDFESLLD 394

[Close]

BLAST of Carg16750 vs. Swiss-Prot
Match: sp|Q5E9Z7|RPC4_BOVIN (DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-07
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 245 LQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCCDLG 304
           L +L  G +GKLLI KSG V+L LG    DV+ G  CSFLQ +V++   ++  G    LG
Sbjct: 318 LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGDMTVLG 377

Query: 305 EIGKRVVVTPDIGSLLN 319
            I  ++V +P+  SLL+
Sbjct: 378 HIKHKLVCSPNFESLLD 394

[Close]

BLAST of Carg16750 vs. Swiss-Prot
Match: sp|O74857|RPC4_SCHPO (DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc53 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.8e-06
Identity = 80/344 (23.26%), Postives = 130/344 (37.79%), Query Frame = 0


Query: 14  KFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGP 73
           KF PK  PRR+  P    E++DV   V     +  +      +   +++  +S   A GP
Sbjct: 3   KFTPKFVPRRKNGP---VEEKDVDERVKIEFDVESQKKWKASRPKPEIKLTASGPFALGP 62

Query: 74  GAASASESSSIRTYGVPKIGNSSRKKD-----IEPESAEDE--ELILPPPMDFEEYGKNL 133
            A+S+     I +  VP     + +KD     +   S  DE  +  +   +   E     
Sbjct: 63  NASSSGTGRPIGSVYVPPPNVKNEEKDDALSKLAASSGHDEGHDEDMVDILKLRELNGQE 122

Query: 134 NEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAE--FGQDVMDREYDE 193
             KT+   K+               P      +P S D ++   AE      V+++E DE
Sbjct: 123 QGKTDIGGKDL------------LVPIITDRMLPESNDEKLKHHAESAIHTTVINKE-DE 182

Query: 194 NSSIPALD-------LGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSIST 253
                ALD       LGL ++      +  Q+   + FP +     G   V  +  S   
Sbjct: 183 EQERVALDLQSLAQHLGLTEQEGMEDHFKDQM-VLMQFPDKLPRFMGDADVDPVWPSSEV 242

Query: 254 ASSELG----------------------DLQNL-------PGGYMGKLLIYKSGAVKLRL 313
              E G                      DL +L       P G +G L +++SG   L +
Sbjct: 243 KEEEAGEKTDVEEKKDPDKHGRENGNIDDLTSLPYPAFHPPAGQIGVLRVHQSGKTTLEM 302

[Close]

BLAST of Carg16750 vs. Swiss-Prot
Match: sp|P25441|RPC4_YEAST (DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC53 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-05
Identity = 34/125 (27.20%), Postives = 60/125 (48.00%), Query Frame = 0


Query: 199 NSENTRYF-FQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLQNLP-------G 258
           N++  R+  FQLP  LP  +R +    KE +    S  S     +               
Sbjct: 298 NNKPERFMVFQLPTRLPAFERPAVKEEKEDMETQASDPSKKKKNIKKKDTKDALSTRELA 357

Query: 259 GYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAIN--TDKGQCCDLGEIGKRVV 314
           G +G + ++KSG + +++G+ + D+  G + +FLQ V+A++   D      LG +  ++V
Sbjct: 358 GKVGSIRVHKSGKLSVKIGNVVMDIGKGAETTFLQDVIALSIADDASSAELLGRVDGKIV 417

[Close]

BLAST of Carg16750 vs. TrEMBL
Match: tr|A0A0A0KZ61|A0A0A0KZ61_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022870 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.2e-121
Identity = 240/335 (71.64%), Postives = 263/335 (78.51%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAP--KSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRG 60
           MKN DPSPPRRK+KFAP                   D  G VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNSDPSPPRRKVKFAPXXXXXXXXXXXXXXXXXXXDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMD 120
           NKVEKKSSVQVAFGPGA S   SSSIRTYGVPK+ N SRK DIEPE  EDEE +LP   D
Sbjct: 61  NKVEKKSSVQVAFGPGAEST--SSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARD 120

Query: 121 FEEYGKNLNEKTEDA----------TKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEML 180
             E GK  ++KT+D           TK  +DYKEPWDY NSYYPTTLPLRMPYSGDPE L
Sbjct: 121 VNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERL 180

Query: 181 DEAEFGQDVMDREYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKV 240
           DEAEFGQDVM+REYDENS IPALDLGLLDEN+E+T+YFFQLPA LP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKV 240

Query: 241 GNLRSSISTASSELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV 300
           GN RSS ST+SS+L DL+ L  G MGKLLIYKSGA+KLRLGD LYDVSSG +CSFLQHVV
Sbjct: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVV 300

Query: 301 AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 324
           AINT++GQCCDLG+IG RVVVTPDI SLLNS+T+L
Sbjct: 301 AINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 333

[Close]

BLAST of Carg16750 vs. TrEMBL
Match: tr|A0A1S3BYJ9|A0A1S3BYJ9_CUCME (DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo OX=3656 GN=LOC103494480 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 3.6e-118
Identity = 227/299 (75.92%), Postives = 246/299 (82.27%), Query Frame = 0


Query: 35  DVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGN 94
           D  G VAQTRYLLRRA ENLGKR NKVEKKSSVQVAFGPGA S   SSSIRTYGVPK+ N
Sbjct: 37  DGEGYVAQTRYLLRRANENLGKRANKVEKKSSVQVAFGPGAEST--SSSIRTYGVPKVEN 96

Query: 95  SSRKKDIEPESAEDEELILPPPMDFEEYGKNLNEKTED----------ATKNTKDYKEPW 154
            SRK DIEPE  EDEE +LP  MD  E GK  ++KT+D           TK  +DYKEPW
Sbjct: 97  GSRKNDIEPEVDEDEEFVLPVAMDVNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPW 156

Query: 155 DYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENSENTR 214
           DY NSYYPTTLPLRMPYSGD E LDEAEFGQD M+REYDENS IPALDLGL DEN+ENT+
Sbjct: 157 DYQNSYYPTTLPLRMPYSGDHERLDEAEFGQDAMNREYDENSVIPALDLGLQDENTENTK 216

Query: 215 YFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLQNLPGGYMGKLLIYKSGAV 274
           YFFQLPA LP PK+SST+TGKEKVGN RSS ST+SS+L DL+ L  G MGKLLIYKSGA+
Sbjct: 217 YFFQLPARLPLPKQSSTATGKEKVGNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAI 276

Query: 275 KLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 324
           KLRLGD LYDVSSG DCSFLQHVVAINT+KGQCCDLG+IGKRVVVTPDI SLLNS+T+L
Sbjct: 277 KLRLGDILYDVSSGSDCSFLQHVVAINTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNL 333

[Close]

BLAST of Carg16750 vs. TrEMBL
Match: tr|A0A2P2JCM0|A0A2P2JCM0_RHIMU (DNA binding protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 9.3e-74
Identity = 169/341 (49.56%), Postives = 218/341 (63.93%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPP-APKTEDEDVVG--NVAQTRYLLRRATENLGKR 60
           M   +PS  RRK+KFAPK    R+P    PKTE    +   + AQ   L+ + +EN  + 
Sbjct: 1   MDGEEPSSGRRKVKFAPKVQSHRKPRSIPPKTEASSTINEDDAAQAEMLMSKFSENFRRH 60

Query: 61  GNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGN---SSRK----------KDIEPE 120
             K EKKSSVQVAFGPGA     +SS+R YG+P++G+   SSR           K +   
Sbjct: 61  VPKAEKKSSVQVAFGPGA-----TSSLRKYGLPRVGDAGGSSRSDVKDSIDNDLKIVTSS 120

Query: 121 SAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGD 180
           S  +++ I   P D  E         E   KN KDY EPWDY+++YYPTTLPLR PYSGD
Sbjct: 121 STANKDQITACPSDAIE---------EFPEKNQKDYIEPWDYNHTYYPTTLPLRRPYSGD 180

Query: 181 PEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTG 240
           PE+L+EAEFG+   + E+DEN+  PA DLGLLD+  +   + FQLPA LP  KRS+++ G
Sbjct: 181 PELLNEAEFGEAAKNLEHDENTINPASDLGLLDKGEKKKLFLFQLPAKLPLLKRSASAKG 240

Query: 241 KEKVGNLRSSISTASSELG-DLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSF 300
           KE+  +   S S ++S++G DL  L  GYMGK+L+Y+SGAVKL+LG TLYDVSSG DC F
Sbjct: 241 KERAESSTMSESNSASKMGSDLAELAEGYMGKMLVYRSGAVKLKLGSTLYDVSSGSDCIF 300

Query: 301 LQHVVAINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDLG 325
            Q V+AINT    CC +GE+GKR VV PD+ SLLNS+ DLG
Sbjct: 301 AQDVMAINTAAKHCCTIGELGKRAVVAPDVDSLLNSVIDLG 327

[Close]

BLAST of Carg16750 vs. TrEMBL
Match: tr|A0A067JSB7|A0A067JSB7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26275 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 6.0e-73
Identity = 167/336 (49.70%), Postives = 219/336 (65.18%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRP-PPAPKTE------DEDVVGNVAQTRYLLRRATEN 60
           M    PSP  RK KF PK+ P+R+P P   K+E      DED     AQ + L+R+  EN
Sbjct: 1   MDQEQPSPTPRKAKFTPKAPPQRKPIPTVTKSEVNDSNNDED---EAAQAQKLMRKFNEN 60

Query: 61  LGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGN--SSRKKDIEPESAEDEEL 120
           L ++  KVEKKSSVQVAFGPGAA    S+SIR YGVP   N  SS + DI+    +D  +
Sbjct: 61  LRRKVPKVEKKSSVQVAFGPGAA---PSTSIRKYGVPGCENAGSSSRLDIKDSDNDDRRI 120

Query: 121 ILPPPMDFEEYGKNLNEKTEDAT---KNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEML 180
           ++      EE G +            K  KDY+EPWDY+++YYPTTLPLR PYSGDPE+L
Sbjct: 121 VVSSLSTAEEDGASKYHSEAIGVLPLKIKKDYREPWDYNHTYYPTTLPLRRPYSGDPELL 180

Query: 181 DEAEFGQDVMDREYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKV 240
           +E EFG+     EY+EN+  PA DLGLL+E+ +   +FFQLP+ LP  KRS+ + GKEKV
Sbjct: 181 NEEEFGEAARKLEYNENTIKPASDLGLLEESDKERLFFFQLPSKLPLVKRSAITKGKEKV 240

Query: 241 -GNLRSSISTASSELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHV 300
            G+  S  ++A  +    Q L  GYMGK+L+Y+SGAVK++LGDTLYDVS G DC+F Q +
Sbjct: 241 EGSTPSQGTSALKKESSFQGLSEGYMGKMLVYRSGAVKIKLGDTLYDVSPGSDCTFAQDL 300

Query: 301 VAINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 324
           +AI+    QCC +G++ KR VVTPD+ SLLNS+ +L
Sbjct: 301 MAIDIASKQCCTIGKLRKRAVVTPDVDSLLNSVINL 330

[Close]

BLAST of Carg16750 vs. TrEMBL
Match: tr|B9R9V4|B9R9V4_RICCO (DNA binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1500880 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.3e-72
Identity = 169/334 (50.60%), Postives = 217/334 (64.97%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRP-PPAPKTEDEDVVGN---VAQTRYLLRRATENLGK 60
           M +  PSP +RK+KF PK+  +RRP    PKTE   V  N     Q + L+R+  EN  +
Sbjct: 1   MDDEQPSPSQRKVKFTPKAPSQRRPRRTVPKTEVNGVDNNEDEAVQAQKLMRKFNENFRR 60

Query: 61  RGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGN--SSRKKDIEPESAEDEELILP 120
           +G +VEKKS+VQVAFGPGA S   S+SIRT+GV K  N  SS  KD    S +D+  I+ 
Sbjct: 61  QGPRVEKKSTVQVAFGPGATS---STSIRTFGVSKGENPVSSGIKD----STDDDGKIVI 120

Query: 121 PPMDFEEYGKNLNEKTED----ATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDE 180
             +  ++  + +N  +ED      K  KDY+EPWDY  +YYPTTLPLR PYSGDP +LDE
Sbjct: 121 SSLSTDKEDEIINCASEDIDALPLKIKKDYREPWDYDRTYYPTTLPLRRPYSGDPVLLDE 180

Query: 181 AEFGQDVMDREYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKV-G 240
           AEFG+     EYDE++  PA DL LL+E       FFQLPA LP  KRS+++ GKEK  G
Sbjct: 181 AEFGEAARKLEYDESTMNPASDLELLEECDTEKMIFFQLPAKLPLVKRSASAKGKEKAEG 240

Query: 241 NLRSSISTASSELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVA 300
           ++ S    A+ +   L  L  GYMGK+L+Y+SGAVKL+LGDTLYDVS G DC F Q V+A
Sbjct: 241 SIPSQGKNAAKKESSLDGLSAGYMGKMLVYRSGAVKLKLGDTLYDVSQGSDCMFAQDVMA 300

Query: 301 INTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 324
           INT    CC +GE+ KR VVTPD+ SLL+S+ +L
Sbjct: 301 INTAAKHCCTIGELEKRAVVTPDVDSLLDSVVNL 327

The following BLAST results are available for this feature:

BLAST of Carg16750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922968.1	2.9e-172	95.68	DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita moschata]	[more]
XP_023551929.1	1.7e-164	92.59	DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022985496.1	4.4e-160	90.74	DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita maxima]	[more]
XP_004146914.1	1.8e-121	71.64	PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis sativus] >...	[more]
XP_008453902.1	5.4e-118	75.92	PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo]	[more]

BLAST of Carg16750 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25180.1	7.2e-48	39.63	RNA polymerase III RPC4	[more]
AT5G09380.1	3.6e-39	35.11	RNA polymerase III RPC4	[more]

BLAST of Carg16750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q91WD1\|RPC4_MOUSE	4.1e-08	42.86	DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d ...	[more]
sp\|P05423\|RPC4_HUMAN	5.3e-08	42.86	DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D P...	[more]
sp\|Q5E9Z7\|RPC4_BOVIN	2.0e-07	42.86	DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=...	[more]
sp\|O74857\|RPC4_SCHPO	3.8e-06	23.26	DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strai...	[more]
sp\|P25441\|RPC4_YEAST	1.1e-05	27.20	DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain...	[more]

BLAST of Carg16750 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZ61\|A0A0A0KZ61_CUCSA	1.2e-121	71.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022870 PE=4 SV=1	[more]
tr\|A0A1S3BYJ9\|A0A1S3BYJ9_CUCME	3.6e-118	75.92	DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A2P2JCM0\|A0A2P2JCM0_RHIMU	9.3e-74	49.56	DNA binding protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A067JSB7\|A0A067JSB7_JATCU	6.0e-73	49.70	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26275 PE=4 SV=1	[more]
tr\|B9R9V4\|B9R9V4_RICCO	1.3e-72	50.60	DNA binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1500880 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed RNA polymerase activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005666	DNA-directed RNA polymerase III complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006383	transcription from RNA polymerase III promoter

Vocabulary: **INTERPRO**
Term	Definition
IPR007811	RPC4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006383	transcription from RNA polymerase III promoter
cellular_component	GO:0005666	DNA-directed RNA polymerase III complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16750-RA	Carg16750-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PFAM	PF05132	RNA_pol_Rpc4	coord: 205..313 e-value: 1.2E-24 score: 87.3
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PANTHER	PTHR13408	DNA-DIRECTED RNA POLYMERASE III	coord: 6..319
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..108
None	No IPR available	PANTHER	PTHR13408:SF3	SUBFAMILY NOT NAMED	coord: 6..319

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16750	Cla010728	Watermelon (97103) v1	carwmB0873
Carg16750	Csa4G022870	Cucumber (Chinese Long) v2	carcuB0886
Carg16750	MELO3C017658	Melon (DHL92) v3.5.1	carmeB0862
Carg16750	ClCG07G016860	Watermelon (Charleston Gray)	carwcgB0848
Carg16750	CSPI04G04000	Wild cucumber (PI 183967)	carcpiB0906
Carg16750	Cucsa.094230	Cucumber (Gy14) v1	carcgyB0992
Carg16750	CmaCh16G002040	Cucurbita maxima (Rimu)	carcmaB1206
Carg16750	CmoCh16G002230	Cucurbita moschata (Rifu)	carcmoB1175
Carg16750	Lsi07G001030	Bottle gourd (USVL1VR-Ls)	carlsiB792
Carg16750	Cp4.1LG14g05450	Cucurbita pepo (Zucchini)	carcpeB1215
Carg16750	CsGy4G003920	Cucumber (Gy14) v2	carcgybB0860
Carg16750	MELO3C017658.2	Melon (DHL92) v3.6.1	carmedB0872
Carg16750	CsaV3_4G004060	Cucumber (Chinese Long) v3	carcucB0910
Carg16750	Cla97C07G143860	Watermelon (97103) v2	carwmbB0911
Carg16750	Bhi01G002027	Wax gourd	carwgoB1018

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16750	Wax gourd	carwgoB1020
Carg16750	Silver-seed gourd	carcarB406
Carg16750	Cucurbita maxima (Rimu)	carcmaB1209
Carg16750	Cucurbita moschata (Rifu)	carcmoB1177
Carg16750	Cucurbita pepo (Zucchini)	carcpeB1216