CmaCh16G002040 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G002040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	DNA-directed RNA polymerase III subunit RPC4
Location	Cma_Chr16 : 933560 .. 936344 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATCCTCCTGATCTAGGGTTCGAATCCTTCTCATTTTTCTTTTCCACCATTTTCTCTCTTTCCCTTCGTCATCTTCAACCTCAAGCTGATGAAGAATCCCGATCCATCTCCTCCGCGCAGAAAGGTAACCCAATATTCAGGTTTCAGCTAACTATTTTTTTGCTTCCTCTTCAACTTGAACTCGATTTAGATCTAAACCCTTCTCCATCTCTCTGCCTCTCTGATACTTCTGCAGATCAAATTCGCCCCAAAATCCACACCGCGCAGAAGACCACCCCCCGCTCCAAAAACGTACTCCTCTGATCTCATCTTCTTCCACATTTTGGTCTCTGAATTTGCACAAAGTTACCGTCAAGTTCTTGTTATCCTTAATTTTGTTTGGCGAATTGCAGTGAAGACGAAGATGTAGATGGTAATGTTGCTCAAACTCGGTACCTCTTACGCCGTGCCACTGTAAGATCCTTTGTTCTTCTATGATTTTCGAATTCTTCTCTACATTTTTGGTTTGATGTTTAGATGATTTTCTGTCTTTCTGACTTCAGCTCTGGAGGATTGAAATTTGTGGATAAAACATTTGAATTTCTTCCCCAGTTTTTAGCAACGCTTTTACTACAAGTTTCTGTTTGGTTCCCGAGAAAAAAAAAATTGGGATGGAAATGAATTCGTTTTCGAGCAGCGTTTGGTGTCTCATTTCTTGCGGGATGAAAATAAAATTAATTTAGGAGAATAATTTGTGTGATTAGTGGACACGTGTATGGTTCAGATTAACATTTTTTTTAAACTAACTTTTAACACCGTCTGATCTGACCACGTGGCATTCACTAATGTTAGTTCATGAACTGTTCGAATTCATTTGATTCTTTCTCCACTTTGTAGGAGAATCTTGGAAAACGAGGGAACAAAGTCGAGAAAAAATGTAAAGTCCGTTTCGAAATCCATGTATTTTTTTCGATGAAATTTTGACGGTCTAATCCCATATGAACAGATTTGTTTTCTTGTTCAAAATTAAGATTGTTGCATTACCTTTTCCTCTATTTTGATATCCATATCTGCAGCTTCTGTGCAAGTTGCATTCGGGCCTGGTGCGGCATCGGCATCAGAATCATCTTCTATTAGAACGTATGGAGTCCCCAAAATCGGAAACAGTAGCAGAAAAAATGATATTGAGCCTGAATCTGCTGAAGATGAGGAACTTATCTTGCCTCTGCCTTTGGATTTCGAAGAATATGGGAAAAATCTCAATGAAAAAACAGAGGATGCAACCAAGAACACGAAGGATTACAAAGAACCATGGGTAATTTCTCTTTCTCCATCTCACTTATTGGCGCGCTCACACACAGATTAGCGTCCTGATTTCATGATATTTTCTCAGAATTGCCATAATTCTTACTATCCTACTACACTTCCTTTACGGATGCCTTTCTCTGGAGATCCTGGTATGTCGTTATTCTCTCGAAATCACTCAAAATCTTATAAACAATCTTGAAAACAGAAGCGGACCTTTATGAGTTCTTAGATTAGGGCTTGTTTATCCCTGCTGATATGAACCTCTTACCTTGGTGGACGATGATTCTGGGTTTGTTCTGTAATTGCTAACTCTATTGCCTCTTGTTGGGGTTTAGAAATGCTTGATGAAGCTGAGTTCGGGCAGGATGTGATGGATAGGGAGTATGATGAGAACTCTAATATACCTGCCTTGGATCTTGGATTGCTGGTTGGTGAATGGATTGATAAATGTGGCTTGAAATATATTAATACATGCAGGATCTAGTTATAATATGGTGGTGTTTTGATGGTGCAGGATGAAAATTCTGAGAATACTAGGTACTTTTTTCAGCTTCCTGCTCGTCTTCCTTTTCCCAAACGATCATCTACTTCAACAGGAAAGGAGAAGGTAGGAAACTTGAGATCTTCAATCAGCACTGGCTCATCAGAGCTGGGCGATTTACAGAACCTGCCCGGTGGATATATGGGGAAACTACTGATATATAAGAGTGGAGCTGTTAAGTTGAGGCTGGGAGATACACTTTACGATGTGAGTAATGTCGTTAGCGTTCTAAGATCGAAATCGAGCATTGTCAATGTAACAGTTCAAGCCGACCACTAACAGATATTGTCTGCTTTGGTTTGTTACGTATCGTTATCAGCCTCACGATTTTTAAACATGTCTACTAGGGAGAGGTTTTCCAATTCACTTCCCTTCGTGGTCCAGCGTTTTCGCTGACATACCGTTCTGTGTTTGGCTCTGATACCATTTGTAACTAAACTTGAGGCTGACCATGATACGTAAGGGGACAAAGTGGACAATATTTAGAGATTATACGTAGTGAGTTGCTGATTTGCTCTGGTTCTCTTTATGGGGCTGTTGCAGGTTTCTTCTGGTTTAGACTGCAGTTTTCTTCAACATGTTGTGGCGATCAACACCGACAAGGGACAGTGCTTTGATCTCGGAGACATAGGCAAACGAGTTGTCGTGACACCAGATATTGGTTCCCTCTTGAATTCAACGACTGACTTGGGATGAACTTGAAGAACAGGCCTGCGGATAGAACAACCATCTCAAAAGGAACAGGAAAGAACGGCTAATCCTTACAATGTCAAAATGGATATGACCAATGGCTGTGTACTGAAAATGCTCACTAGGTAAGGAAGTTGCGTTTTGCGGCTCTTAGGATGTCACATTATTCACCAAACTGCCTCCTTTGTTAATCCAATGCAACAAGAACGTGTTCATTCTCTCTAATTTCTAGCTGTGTAGTGGGTTGTCATTAAACAATATGGATA

mRNA sequence

AGATCCTCCTGATCTAGGGTTCGAATCCTTCTCATTTTTCTTTTCCACCATTTTCTCTCTTTCCCTTCGTCATCTTCAACCTCAAGCTGATGAAGAATCCCGATCCATCTCCTCCGCGCAGAAAGATCAAATTCGCCCCAAAATCCACACCGCGCAGAAGACCACCCCCCGCTCCAAAAACTGAAGACGAAGATGTAGATGGTAATGTTGCTCAAACTCGGTACCTCTTACGCCGTGCCACTGAGAATCTTGGAAAACGAGGGAACAAAGTCGAGAAAAAATCTTCTGTGCAAGTTGCATTCGGGCCTGGTGCGGCATCGGCATCAGAATCATCTTCTATTAGAACGTATGGAGTCCCCAAAATCGGAAACAGTAGCAGAAAAAATGATATTGAGCCTGAATCTGCTGAAGATGAGGAACTTATCTTGCCTCTGCCTTTGGATTTCGAAGAATATGGGAAAAATCTCAATGAAAAAACAGAGGATGCAACCAAGAACACGAAGGATTACAAAGAACCATGGAATTGCCATAATTCTTACTATCCTACTACACTTCCTTTACGGATGCCTTTCTCTGGAGATCCTGAAATGCTTGATGAAGCTGAGTTCGGGCAGGATGTGATGGATAGGGAGTATGATGAGAACTCTAATATACCTGCCTTGGATCTTGGATTGCTGGATGAAAATTCTGAGAATACTAGGTACTTTTTTCAGCTTCCTGCTCGTCTTCCTTTTCCCAAACGATCATCTACTTCAACAGGAAAGGAGAAGGTAGGAAACTTGAGATCTTCAATCAGCACTGGCTCATCAGAGCTGGGCGATTTACAGAACCTGCCCGGTGGATATATGGGGAAACTACTGATATATAAGAGTGGAGCTGTTAAGTTGAGGCTGGGAGATACACTTTACGATGTTTCTTCTGGTTTAGACTGCAGTTTTCTTCAACATGTTGTGGCGATCAACACCGACAAGGGACAGTGCTTTGATCTCGGAGACATAGGCAAACGAGTTGTCGTGACACCAGATATTGGTTCCCTCTTGAATTCAACGACTGACTTGGGATGAACTTGAAGAACAGGCCTGCGGATAGAACAACCATCTCAAAAGGAACAGGAAAGAACGGCTAATCCTTACAATGTCAAAATGGATATGACCAATGGCTGTGTACTGAAAATGCTCACTAGGTAAGGAAGTTGCGTTTTGCGGCTCTTAGGATGTCACATTATTCACCAAACTGCCTCCTTTGTTAATCCAATGCAACAAGAACGTGTTCATTCTCTCTAATTTCTAGCTGTGTAGTGGGTTGTCATTAAACAATATGGATA

Coding sequence (CDS)

ATGAAGAATCCCGATCCATCTCCTCCGCGCAGAAAGATCAAATTCGCCCCAAAATCCACACCGCGCAGAAGACCACCCCCCGCTCCAAAAACTGAAGACGAAGATGTAGATGGTAATGTTGCTCAAACTCGGTACCTCTTACGCCGTGCCACTGAGAATCTTGGAAAACGAGGGAACAAAGTCGAGAAAAAATCTTCTGTGCAAGTTGCATTCGGGCCTGGTGCGGCATCGGCATCAGAATCATCTTCTATTAGAACGTATGGAGTCCCCAAAATCGGAAACAGTAGCAGAAAAAATGATATTGAGCCTGAATCTGCTGAAGATGAGGAACTTATCTTGCCTCTGCCTTTGGATTTCGAAGAATATGGGAAAAATCTCAATGAAAAAACAGAGGATGCAACCAAGAACACGAAGGATTACAAAGAACCATGGAATTGCCATAATTCTTACTATCCTACTACACTTCCTTTACGGATGCCTTTCTCTGGAGATCCTGAAATGCTTGATGAAGCTGAGTTCGGGCAGGATGTGATGGATAGGGAGTATGATGAGAACTCTAATATACCTGCCTTGGATCTTGGATTGCTGGATGAAAATTCTGAGAATACTAGGTACTTTTTTCAGCTTCCTGCTCGTCTTCCTTTTCCCAAACGATCATCTACTTCAACAGGAAAGGAGAAGGTAGGAAACTTGAGATCTTCAATCAGCACTGGCTCATCAGAGCTGGGCGATTTACAGAACCTGCCCGGTGGATATATGGGGAAACTACTGATATATAAGAGTGGAGCTGTTAAGTTGAGGCTGGGAGATACACTTTACGATGTTTCTTCTGGTTTAGACTGCAGTTTTCTTCAACATGTTGTGGCGATCAACACCGACAAGGGACAGTGCTTTGATCTCGGAGACATAGGCAAACGAGTTGTCGTGACACCAGATATTGGTTCCCTCTTGAATTCAACGACTGACTTGGGATGA

Protein sequence

MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVDGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEELILPLPLDFEEYGKNLNEKTEDATKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEFGQDVMDREYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSISTGSSELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCFDLGDIGKRVVVTPDIGSLLNSTTDLG

Homology

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BLAST of CmaCh16G002040 vs. Swiss-Prot
Match: RPC4_MOUSE (DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus GN=Polr3d PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 6.9e-08
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 245 LQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCFDLG 304
           L +L  G +GKLLI KSG V+L LG    DV+ G  CSFLQ +V++   ++  G+   LG
Sbjct: 318 LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGEMTVLG 377

Query: 305 DIGKRVVVTPDIGSLLN 319
            +  ++V +PD  SLL+
Sbjct: 378 HVKHKLVCSPDFESLLD 394

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BLAST of CmaCh16G002040 vs. Swiss-Prot
Match: RPC4_SCHPO (DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc53 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.9e-08
Identity = 81/345 (23.48%), Postives = 142/345 (41.16%), Query Frame = 1


Query: 14  KFAPKSTPRRRPPPAPKTEDEDVDGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGP 73
           KF PK  PRR+  P    E++DVD  V     +  +      +   +++  +S   A GP
Sbjct: 3   KFTPKFVPRRKNGPV---EEKDVDERVKIEFDVESQKKWKASRPKPEIKLTASGPFALGP 62

Query: 74  GAASASESSSIRTYGVP--KIGNSSRKNDIEPESAE-------DEELILPLPLDFEEYGK 133
            A+S+     I +  VP   + N  + + +   +A        DE+++  L L   E   
Sbjct: 63  NASSSGTGRPIGSVYVPPPNVKNEEKDDALSKLAASSGHDEGHDEDMVDILKL--RELNG 122

Query: 134 NLNEKTEDATKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEFG--QDVMDREY 193
               KT+   K+               P      +P S D ++   AE      V+++E 
Sbjct: 123 QEQGKTDIGGKDL------------LVPIITDRMLPESNDEKLKHHAESAIHTTVINKED 182

Query: 194 DENSNIPALDL-------GL-----LDENSENTRYFFQLPARLPF--------PKRSSTS 253
           +E   + ALDL       GL     ++++ ++     Q P +LP         P   S+ 
Sbjct: 183 EEQERV-ALDLQSLAQHLGLTEQEGMEDHFKDQMVLMQFPDKLPRFMGDADVDPVWPSSE 242

Query: 254 TGKEKVGNL-----RSSISTGSSELGDLQNL----------PGGYMGKLLIYKSGAVKLR 313
             +E+ G       +        E G++ +L          P G +G L +++SG   L 
Sbjct: 243 VKEEEAGEKTDVEEKKDPDKHGRENGNIDDLTSLPYPAFHPPAGQIGVLRVHQSGKTTLE 302

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BLAST of CmaCh16G002040 vs. Swiss-Prot
Match: RPC4_HUMAN (DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens GN=POLR3D PE=1 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 9.0e-08
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 245 LQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCFDLG 304
           L +L  G +GKLLI KSG V+L LG    DV+ G  CSFLQ +V++   ++  G+   LG
Sbjct: 318 LADLTEGQVGKLLIRKSGRVQLLLGKVTLDVTMGTACSFLQELVSVGLGDSRTGEMTVLG 377

Query: 305 DIGKRVVVTPDIGSLLN 319
            +  ++V +PD  SLL+
Sbjct: 378 HVKHKLVCSPDFESLLD 394

[Close]

BLAST of CmaCh16G002040 vs. Swiss-Prot
Match: RPC4_BOVIN (DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus GN=POLR3D PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-07
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1


Query: 245 LQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCFD---LG 304
           L +L  G +GKLLI KSG V+L LG    DV+ G  CSFLQ +V++     +  D   LG
Sbjct: 318 LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGDMTVLG 377

Query: 305 DIGKRVVVTPDIGSLLN 319
            I  ++V +P+  SLL+
Sbjct: 378 HIKHKLVCSPNFESLLD 394

[Close]

BLAST of CmaCh16G002040 vs. Swiss-Prot
Match: RPC4_YEAST (DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC53 PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 4.9e-06
Identity = 35/125 (28.00%), Postives = 61/125 (48.80%), Query Frame = 1


Query: 199 NSENTRYF-FQLPARLPFPKRSSTSTGKEKVGNLRSSISTGSSELGDLQNLPG------- 258
           N++  R+  FQLP RLP  +R +    KE +    S  S     +               
Sbjct: 298 NNKPERFMVFQLPTRLPAFERPAVKEEKEDMETQASDPSKKKKNIKKKDTKDALSTRELA 357

Query: 259 GYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAIN--TDKGQCFDLGDIGKRVV 314
           G +G + ++KSG + +++G+ + D+  G + +FLQ V+A++   D      LG +  ++V
Sbjct: 358 GKVGSIRVHKSGKLSVKIGNVVMDIGKGAETTFLQDVIALSIADDASSAELLGRVDGKIV 417

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BLAST of CmaCh16G002040 vs. TrEMBL
Match: A0A0A0KZ61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022870 PE=4 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 1.5e-131
Identity = 252/335 (75.22%), Postives = 278/335 (82.99%), Query Frame = 1


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVDGNVAQTRYLLRRATENLGKRG 60
           MKN DPSPPRRK+KFAPKS+ R+RPPP P  KTEDED +G VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEELILPLPLD 120
           NKVEKKSSVQVAFGPGA S S  SSIRTYGVPK+ N SRKNDIEPE  EDEE +LP+  D
Sbjct: 61  NKVEKKSSVQVAFGPGAESTS--SSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARD 120

Query: 121 FEEYGKNLNEKTEDA----------TKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEML 180
             E GK  ++KT+D           TK  +DYKEPW+  NSYYPTTLPLRMP+SGDPE L
Sbjct: 121 VNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERL 180

Query: 181 DEAEFGQDVMDREYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKV 240
           DEAEFGQDVM+REYDENS IPALDLGLLDEN+E+T+YFFQLPARLP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKV 240

Query: 241 GNLRSSISTGSSELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV 300
           GN RSS ST SS+L DL+ L  G MGKLLIYKSGA+KLRLGD LYDVSSG +CSFLQHVV
Sbjct: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVV 300

Query: 301 AINTDKGQCFDLGDIGKRVVVTPDIGSLLNSTTDL 324
           AINT++GQC DLGDIG RVVVTPDI SLLNS T+L
Sbjct: 301 AINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 333

[Close]

BLAST of CmaCh16G002040 vs. TrEMBL
Match: A0A061FZZ6_THECC (DNA binding protein, putative isoform 2 OS=Theobroma cacao GN=TCM_014896 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.8e-71
Identity = 162/332 (48.80%), Postives = 214/332 (64.46%), Query Frame = 1


Query: 1   MKNPDPSPPRRKIKFAPKS--TPRRRPPPAPKTEDEDVDGNVAQTRYLLRRATENLGKRG 60
           M    PS  RRK++FAPK+  + RR      K+E  D DG  AQ +YLL R  EN  ++ 
Sbjct: 1   MDQDGPSSGRRKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQAQYLLGRFNENQTRQR 60

Query: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEE--LILPLP 120
            KVEKKSS Q++FGPGA S   S+ +R YG  + G S +  D    S +D +  +I   P
Sbjct: 61  PKVEKKSSAQISFGPGAPS---SNLLRAYGSQRGGTSGKSTDSRQRSPDDNDGQIIGSFP 120

Query: 121 LDFEEYGKNLNEKTE---DATKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEF 180
              +E   ++         A K  ++Y+EPW+ H++YYP TLPLR P+SGDPE+LD+AEF
Sbjct: 121 SASKEDRTDICSSDAIEASAPKIKREYREPWDYHHTYYPITLPLRRPYSGDPELLDQAEF 180

Query: 181 GQDVMDREYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRS 240
             +   +EYDE +  PA DLGLL+E  +   +FFQLPA LP  KR +++ GKEK  NL S
Sbjct: 181 -VEAARKEYDEKTINPASDLGLLEEGEKGKMFFFQLPANLPVIKRLASTKGKEKAENLGS 240

Query: 241 SISTGSSELG-DLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINT 300
           S   G+ + G  L+ LPGG+MGK+L+YKSGAVKL+LG+TLYDVS G DC F Q V A+NT
Sbjct: 241 SERFGALKKGCQLEELPGGFMGKMLVYKSGAVKLKLGETLYDVSPGSDCIFAQDVAAVNT 300

Query: 301 DKGQCFDLGDIGKRVVVTPDIGSLLNSTTDLG 325
            +  C  +G++GKRVVVTPDI S+LNS  DLG
Sbjct: 301 TEKHCCVIGELGKRVVVTPDISSVLNSVIDLG 328

[Close]

BLAST of CmaCh16G002040 vs. TrEMBL
Match: B9R9V4_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1500880 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 4.4e-70
Identity = 162/331 (48.94%), Postives = 215/331 (64.95%), Query Frame = 1


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPP-PAPKTEDEDVDGN---VAQTRYLLRRATENLGK 60
           M +  PSP +RK+KF PK+  +RRP    PKTE   VD N     Q + L+R+  EN  +
Sbjct: 1   MDDEQPSPSQRKVKFTPKAPSQRRPRRTVPKTEVNGVDNNEDEAVQAQKLMRKFNENFRR 60

Query: 61  RGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEELILP-L 120
           +G +VEKKS+VQVAFGPGA S   S+SIRT+GV K G +   + I+  + +D ++++  L
Sbjct: 61  QGPRVEKKSTVQVAFGPGATS---STSIRTFGVSK-GENPVSSGIKDSTDDDGKIVISSL 120

Query: 121 PLDFEEYGKNLNEKTEDAT--KNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEF 180
             D E+   N   +  DA   K  KDY+EPW+   +YYPTTLPLR P+SGDP +LDEAEF
Sbjct: 121 STDKEDEIINCASEDIDALPLKIKKDYREPWDYDRTYYPTTLPLRRPYSGDPVLLDEAEF 180

Query: 181 GQDVMDREYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKV-GNLR 240
           G+     EYDE++  PA DL LL+E       FFQLPA+LP  KRS+++ GKEK  G++ 
Sbjct: 181 GEAARKLEYDESTMNPASDLELLEECDTEKMIFFQLPAKLPLVKRSASAKGKEKAEGSIP 240

Query: 241 SSISTGSSELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINT 300
           S     + +   L  L  GYMGK+L+Y+SGAVKL+LGDTLYDVS G DC F Q V+AINT
Sbjct: 241 SQGKNAAKKESSLDGLSAGYMGKMLVYRSGAVKLKLGDTLYDVSQGSDCMFAQDVMAINT 300

Query: 301 DKGQCFDLGDIGKRVVVTPDIGSLLNSTTDL 324
               C  +G++ KR VVTPD+ SLL+S  +L
Sbjct: 301 AAKHCCTIGELEKRAVVTPDVDSLLDSVVNL 327

[Close]

BLAST of CmaCh16G002040 vs. TrEMBL
Match: A5AXE6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022611 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 7.5e-70
Identity = 167/344 (48.55%), Postives = 223/344 (64.83%), Query Frame = 1


Query: 3   NPDPSPPRRKIKFAPKSTPRRRPP---PAPKTEDEDVDGNVAQTRYLLRRATENLGKRGN 62
           N   S   RK++FAPKS PRR+P    P P   +E+ +   AQ  YLLRR  E L ++G 
Sbjct: 4   NESSSVSPRKVRFAPKSPPRRKPKTTAPQPVVAEEEDEAKRAQ--YLLRRVNEKLRRQGP 63

Query: 63  KVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPE-SAEDEELILPLPLD 122
           KVEK SSVQV FGPGAA+ S++  IRT+GV + GNS + + +E + S  D E I      
Sbjct: 64  KVEKTSSVQVVFGPGAATPSDT--IRTFGVHRDGNSDKSSGMELKVSTPDHEEIAVSSXS 123

Query: 123 F---EEYGKNLNEKTEDATKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEFGQ 182
               +E      + T+D+ +  K YKEPW+  +SYYPTTLPLR P SGDPE+LDEAEFG+
Sbjct: 124 TTKPDETNGXFADATDDSAQIRKRYKEPWDYVHSYYPTTLPLRKPHSGDPEILDEAEFGE 183

Query: 183 DVMDREYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGN----- 242
              + EYDE +  PA +LGLL+E+ +   + FQLPA LP  K+S+++ GKE VGN     
Sbjct: 184 ASTNLEYDEKTINPASELGLLEESEKGRMFLFQLPANLPLVKQSASAKGKEIVGNSTSLE 243

Query: 243 -----------LRSSIST---GSSELG-DLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDV 302
                       RSS+S+   G+SE    L++L GG+ GK+L+YKSGA+KL+LG+ LYDV
Sbjct: 244 GIYASAKGKQVARSSLSSKSIGTSEHSCRLEDLAGGHXGKMLVYKSGAIKLKLGEILYDV 303

Query: 303 SSGLDCSFLQHVVAINTDKGQCFDLGDIGKRVVVTPDIGSLLNS 320
           S GLDC+ +Q VVAINT    C+ LG++GKRV+VTPD+ SLL+S
Sbjct: 304 SPGLDCTCVQDVVAINTVDKHCYALGELGKRVIVTPDVDSLLDS 343

[Close]

BLAST of CmaCh16G002040 vs. TrEMBL
Match: A0A067JSB7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26275 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.3e-69
Identity = 160/333 (48.05%), Postives = 215/333 (64.56%), Query Frame = 1


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRP-PPAPKTEDEDVDGN---VAQTRYLLRRATENLGK 60
           M    PSP  RK KF PK+ P+R+P P   K+E  D + +    AQ + L+R+  ENL +
Sbjct: 1   MDQEQPSPTPRKAKFTPKAPPQRKPIPTVTKSEVNDSNNDEDEAAQAQKLMRKFNENLRR 60

Query: 61  RGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGN--SSRKNDIEPESAEDEELILP 120
           +  KVEKKSSVQVAFGPGAA    S+SIR YGVP   N  SS + DI+    +D  +++ 
Sbjct: 61  KVPKVEKKSSVQVAFGPGAA---PSTSIRKYGVPGCENAGSSSRLDIKDSDNDDRRIVVS 120

Query: 121 LPLDFEEYGKNLNEKTEDAT---KNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEA 180
                EE G +            K  KDY+EPW+ +++YYPTTLPLR P+SGDPE+L+E 
Sbjct: 121 SLSTAEEDGASKYHSEAIGVLPLKIKKDYREPWDYNHTYYPTTLPLRRPYSGDPELLNEE 180

Query: 181 EFGQDVMDREYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKV-GN 240
           EFG+     EY+EN+  PA DLGLL+E+ +   +FFQLP++LP  KRS+ + GKEKV G+
Sbjct: 181 EFGEAARKLEYNENTIKPASDLGLLEESDKERLFFFQLPSKLPLVKRSAITKGKEKVEGS 240

Query: 241 LRSSISTGSSELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI 300
             S  ++   +    Q L  GYMGK+L+Y+SGAVK++LGDTLYDVS G DC+F Q ++AI
Sbjct: 241 TPSQGTSALKKESSFQGLSEGYMGKMLVYRSGAVKIKLGDTLYDVSPGSDCTFAQDLMAI 300

Query: 301 NTDKGQCFDLGDIGKRVVVTPDIGSLLNSTTDL 324
           +    QC  +G + KR VVTPD+ SLLNS  +L
Sbjct: 301 DIASKQCCTIGKLRKRAVVTPDVDSLLNSVINL 330

[Close]

BLAST of CmaCh16G002040 vs. TAIR10
Match: AT4G25180.1 (AT4G25180.1 RNA polymerase III RPC4)

HSP 1 Score: 180.3 bits (456), Expect = 2.0e-45
Identity = 125/321 (38.94%), Postives = 173/321 (53.89%), Query Frame = 1


Query: 6   PSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVDGNVAQTRYLLRRATENLGKRGNKVEK 65
           P+PPR          P RR P AP   TE E+ + N+  +R   RR    +G+R     K
Sbjct: 14  PNPPR----------PSRRLPIAPTSNTEAEEDEENIKASRQFDRRI---VGRRPKTETK 73

Query: 66  KSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEELILPLPLDFEEYG 125
            SS +VAF P  +  +    IR++GVPK  +    +D+ P S      ILP         
Sbjct: 74  ASSPEVAFQPSLSPLA----IRSFGVPK-EDDKPNSDVNPSSPAS---ILPAVSSVTAAQ 133

Query: 126 KNLNEKTEDATKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEFGQDVMDREYD 185
           ++  E     T+   DY EPW+  NSYYPT LPLR P SGD E+LD+ EFG+   +R+YD
Sbjct: 134 EDGEEVHNFVTRTGDDYVEPWDYRNSYYPTVLPLRKPNSGDIELLDQEEFGEVAKNRDYD 193

Query: 186 ENSNIPALDLGLLD-ENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSISTGSSEL 245
           EN+   A +LGL   ++S+   + F++P  LP  K+++ +T K  V    S IS      
Sbjct: 194 ENTINSAEELGLTSVQHSKKQMFIFKIPDCLPVVKQTTGATTKRSVREYSSGISN----- 253

Query: 246 GDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCFDLGD 305
              + LP G+MGK+L+YKSGAVKL++GD L+DVS G        VVAI+     C  +G 
Sbjct: 254 -PFEGLPEGFMGKMLVYKSGAVKLKVGDALFDVSPGPGTKIPNDVVAIDIKGRNCSRIGS 307

Query: 306 IGKRVVVTPDIGSLLNSTTDL 324
             K V VTPD+ SLLN  +D+
Sbjct: 314 SAKFVTVTPDVESLLNPASDM 307

[Close]

BLAST of CmaCh16G002040 vs. TAIR10
Match: AT5G09380.1 (AT5G09380.1 RNA polymerase III RPC4)

HSP 1 Score: 161.4 bits (407), Expect = 9.4e-40
Identity = 115/319 (36.05%), Postives = 165/319 (51.72%), Query Frame = 1


Query: 5   DPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVDGNVAQTRYLLRRATENLGKRGNKVEKK 64
           +  PP RK+KFAPK+ P+R P P  K E  + + N AQ   LLRR  E   +        
Sbjct: 2   EQKPPVRKMKFAPKAPPKRVPKPEVKPEVVEDNSNSAQASELLRRVNERSLR-------- 61

Query: 65  SSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEELILPLPLDFEEYGK 124
                   P A     +S +   G   + NS+R N     S                YG 
Sbjct: 62  -------KPKADKKVPASQVAWLG--GVVNSTRSNKYLNRSNG-------------AYGS 121

Query: 125 NLNEKTEDATKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEFGQDVMDREYDE 184
              ++ E        YKEPW+ + SYYP TLP+R P++GDPE+LD  EF Q      + E
Sbjct: 122 TSTQEIE--------YKEPWDYY-SYYPITLPMRRPYAGDPEVLDVEEFMQA---GGHHE 181

Query: 185 NSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSISTGSSELGD 244
           +S   A +LGL++++ E   +F +LP+    P  S+ +   E   N++  +     +  D
Sbjct: 182 DSLNTAANLGLMEDSGEQKMFFMRLPS---VPLASTPTENLETRPNIKGPVE---KKTVD 241

Query: 245 LQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCFDLGDIG 304
           L+ LP GYMGKLL+YKSGAVK++LG+ LYDVS GL   F Q V+ +NT++  C  +GD+ 
Sbjct: 242 LKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGDVY 272

Query: 305 KRVVVTPDIGSLLNSTTDL 324
           K  V+TPDI S+L    ++
Sbjct: 302 KHAVLTPDIDSILKDIENI 272

[Close]

BLAST of CmaCh16G002040 vs. NCBI nr
Match: gi|449458357|ref|XP_004146914.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis sativus])

HSP 1 Score: 477.2 bits (1227), Expect = 2.2e-131
Identity = 252/335 (75.22%), Postives = 278/335 (82.99%), Query Frame = 1


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVDGNVAQTRYLLRRATENLGKRG 60
           MKN DPSPPRRK+KFAPKS+ R+RPPP P  KTEDED +G VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEELILPLPLD 120
           NKVEKKSSVQVAFGPGA S S  SSIRTYGVPK+ N SRKNDIEPE  EDEE +LP+  D
Sbjct: 61  NKVEKKSSVQVAFGPGAESTS--SSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARD 120

Query: 121 FEEYGKNLNEKTEDA----------TKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEML 180
             E GK  ++KT+D           TK  +DYKEPW+  NSYYPTTLPLRMP+SGDPE L
Sbjct: 121 VNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERL 180

Query: 181 DEAEFGQDVMDREYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKV 240
           DEAEFGQDVM+REYDENS IPALDLGLLDEN+E+T+YFFQLPARLP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKV 240

Query: 241 GNLRSSISTGSSELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV 300
           GN RSS ST SS+L DL+ L  G MGKLLIYKSGA+KLRLGD LYDVSSG +CSFLQHVV
Sbjct: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVV 300

Query: 301 AINTDKGQCFDLGDIGKRVVVTPDIGSLLNSTTDL 324
           AINT++GQC DLGDIG RVVVTPDI SLLNS T+L
Sbjct: 301 AINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 333

[Close]

BLAST of CmaCh16G002040 vs. NCBI nr
Match: gi|659107882|ref|XP_008453902.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like [Cucumis melo])

HSP 1 Score: 476.5 bits (1225), Expect = 3.8e-131
Identity = 253/335 (75.52%), Postives = 276/335 (82.39%), Query Frame = 1


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVDGNVAQTRYLLRRATENLGKRG 60
           MKN D SPPRRK+KFAPKS+ RRRPPP P  KTEDED +G VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEELILPLPLD 120
           NKVEKKSSVQVAFGPGA S S  SSIRTYGVPK+ N SRKNDIEPE  EDEE +LP+ +D
Sbjct: 61  NKVEKKSSVQVAFGPGAESTS--SSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMD 120

Query: 121 FEEYGKNLNEKTEDA----------TKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEML 180
             E GK  ++KT+D           TK  +DYKEPW+  NSYYPTTLPLRMP+SGD E L
Sbjct: 121 VNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERL 180

Query: 181 DEAEFGQDVMDREYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKV 240
           DEAEFGQD M+REYDENS IPALDLGL DEN+ENT+YFFQLPARLP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDAMNREYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKV 240

Query: 241 GNLRSSISTGSSELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV 300
           GN RSS ST SS+L DL+ L  G MGKLLIYKSGA+KLRLGD LYDVSSG DCSFLQHVV
Sbjct: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVV 300

Query: 301 AINTDKGQCFDLGDIGKRVVVTPDIGSLLNSTTDL 324
           AINT+KGQC DLGDIGKRVVVTPDI SLLNS T+L
Sbjct: 301 AINTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNL 333

[Close]

BLAST of CmaCh16G002040 vs. NCBI nr
Match: gi|1009122078|ref|XP_015877810.1| (PREDICTED: uncharacterized protein LOC107414218 [Ziziphus jujuba])

HSP 1 Score: 316.6 bits (810), Expect = 5.0e-83
Identity = 180/326 (55.21%), Postives = 236/326 (72.39%), Query Frame = 1


Query: 7   SPPRRKIKFAPKSTPRRRP-PPAPKTE--DEDVDGNVAQTRYLLRRATENLGKRGNKVEK 66
           S  R+K++FAPK  PRR+P PP PK E  DEDVD    + + LLR+  ENL +RG++ EK
Sbjct: 8   STTRKKLRFAPKPPPRRKPRPPPPKKEAGDEDVD-EAKEAKSLLRQFNENLTRRGSRAEK 67

Query: 67  KSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEP---ESAEDEELILPLPLDFE 126
           KSSVQVAFGPGA   + SSSIRT+GV K  NS + +D+EP   ES++ E++I PLPLD  
Sbjct: 68  KSSVQVAFGPGA---THSSSIRTFGVDKARNSYKSSDVEPKVSESSDSEKIISPLPLDKA 127

Query: 127 EYGKNLNEKTEDATKNTK-DYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEFGQDVMD 186
             G  L E  + +T+  K +YKEPW+ ++SYYP TLPLR P+SGDPE+L+EAEFG+   +
Sbjct: 128 GTGAALEEVRDLSTQTVKKEYKEPWDYNHSYYPITLPLRPPYSGDPELLNEAEFGEAARN 187

Query: 187 REYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSISTGS 246
           +EYDE +  PA +LGL++EN E   +FFQLPA LP  K+S++S GKEKVG+  SS S G+
Sbjct: 188 KEYDETAIHPASELGLMEENGERKMFFFQLPATLPMVKQSASSKGKEKVGSSTSSGSVGT 247

Query: 247 SELGD-LQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCF 306
           +  G  L+ L GG MGK+L+YKSGAVKL+LGDTL+DVS G D    Q+VVAINT + +C 
Sbjct: 248 TSKGSKLEELHGGCMGKMLVYKSGAVKLKLGDTLFDVSPGSDFQVSQNVVAINTAEKECN 307

Query: 307 DLGDIGKRVVVTPDIGSLLNSTTDLG 325
            LG++ K VVV+PD+ S+LNS  DLG
Sbjct: 308 VLGELNKLVVVSPDVCSVLNSIIDLG 329

[Close]

BLAST of CmaCh16G002040 vs. NCBI nr
Match: gi|590671470|ref|XP_007038340.1| (DNA binding protein, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 277.7 bits (709), Expect = 2.6e-71
Identity = 162/332 (48.80%), Postives = 214/332 (64.46%), Query Frame = 1


Query: 1   MKNPDPSPPRRKIKFAPKS--TPRRRPPPAPKTEDEDVDGNVAQTRYLLRRATENLGKRG 60
           M    PS  RRK++FAPK+  + RR      K+E  D DG  AQ +YLL R  EN  ++ 
Sbjct: 1   MDQDGPSSGRRKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQAQYLLGRFNENQTRQR 60

Query: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEE--LILPLP 120
            KVEKKSS Q++FGPGA S   S+ +R YG  + G S +  D    S +D +  +I   P
Sbjct: 61  PKVEKKSSAQISFGPGAPS---SNLLRAYGSQRGGTSGKSTDSRQRSPDDNDGQIIGSFP 120

Query: 121 LDFEEYGKNLNEKTE---DATKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEF 180
              +E   ++         A K  ++Y+EPW+ H++YYP TLPLR P+SGDPE+LD+AEF
Sbjct: 121 SASKEDRTDICSSDAIEASAPKIKREYREPWDYHHTYYPITLPLRRPYSGDPELLDQAEF 180

Query: 181 GQDVMDREYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRS 240
             +   +EYDE +  PA DLGLL+E  +   +FFQLPA LP  KR +++ GKEK  NL S
Sbjct: 181 -VEAARKEYDEKTINPASDLGLLEEGEKGKMFFFQLPANLPVIKRLASTKGKEKAENLGS 240

Query: 241 SISTGSSELG-DLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINT 300
           S   G+ + G  L+ LPGG+MGK+L+YKSGAVKL+LG+TLYDVS G DC F Q V A+NT
Sbjct: 241 SERFGALKKGCQLEELPGGFMGKMLVYKSGAVKLKLGETLYDVSPGSDCIFAQDVAAVNT 300

Query: 301 DKGQCFDLGDIGKRVVVTPDIGSLLNSTTDLG 325
            +  C  +G++GKRVVVTPDI S+LNS  DLG
Sbjct: 301 TEKHCCVIGELGKRVVVTPDISSVLNSVIDLG 328

[Close]

BLAST of CmaCh16G002040 vs. NCBI nr
Match: gi|1009122331|ref|XP_015877946.1| (PREDICTED: uncharacterized protein LOC107414350 [Ziziphus jujuba])

HSP 1 Score: 273.9 bits (699), Expect = 3.7e-70
Identity = 150/269 (55.76%), Postives = 196/269 (72.86%), Query Frame = 1


Query: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEP---ESAEDEELILPLPL 120
           V+  +SVQVAFGPGA   + SSSIRT+GV K  NS + +D+EP   ES++ E++I PLPL
Sbjct: 4   VQPAASVQVAFGPGA---THSSSIRTFGVDKARNSYKSSDVEPKVSESSDSEKIISPLPL 63

Query: 121 DFEEYGKNLNEKTEDATKNTK-DYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEFGQD 180
           D    G  L E  + +T+  K +YKEPW+ ++SYYP TLPLR P+SGDPE+L+EAEFG+ 
Sbjct: 64  DKAGTGAALEEVRDLSTQTVKKEYKEPWDYNHSYYPITLPLRPPYSGDPELLNEAEFGEA 123

Query: 181 VMDREYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSIS 240
             ++EYDE +  PA +LGL++EN E   +FFQLPA LP  K+S++S GKEKVG+  SS S
Sbjct: 124 ARNKEYDETAIHPASELGLMEENGERKMFFFQLPATLPMVKQSASSKGKEKVGSSTSSGS 183

Query: 241 TGSSELGD-LQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKG 300
            G+S  G  L+ L GG MGK+L+YKSGAVKL+LGDTL+DVS G D    Q+VVAINT K 
Sbjct: 184 VGASSKGSKLEELHGGCMGKMLVYKSGAVKLKLGDTLFDVSPGSDFQVSQNVVAINTAKK 243

Query: 301 QCFDLGDIGKRVVVTPDIGSLLNSTTDLG 325
           +C  LG++ K VVV+PD+ S+LNS  DLG
Sbjct: 244 ECNVLGELNKLVVVSPDVCSVLNSVIDLG 269

The following BLAST results are available for this feature:

BLAST of CmaCh16G002040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPC4_MOUSE	6.9e-08	42.86	DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus GN=Polr3d PE=2 SV=2	[more]
RPC4_SCHPO	6.9e-08	23.48	DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strai...	[more]
RPC4_HUMAN	9.0e-08	42.86	DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens GN=POLR3D PE=1 SV=2	[more]
RPC4_BOVIN	2.6e-07	42.86	DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus GN=POLR3D PE=2 SV=1	[more]
RPC4_YEAST	4.9e-06	28.00	DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain...	[more]

BLAST of CmaCh16G002040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ61_CUCSA	1.5e-131	75.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022870 PE=4 SV=1	[more]
A0A061FZZ6_THECC	1.8e-71	48.80	DNA binding protein, putative isoform 2 OS=Theobroma cacao GN=TCM_014896 PE=4 SV...	[more]
B9R9V4_RICCO	4.4e-70	48.94	DNA binding protein, putative OS=Ricinus communis GN=RCOM_1500880 PE=4 SV=1	[more]
A5AXE6_VITVI	7.5e-70	48.55	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022611 PE=4 SV=1	[more]
A0A067JSB7_JATCU	1.3e-69	48.05	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26275 PE=4 SV=1	[more]

BLAST of CmaCh16G002040 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25180.1	2.0e-45	38.94	RNA polymerase III RPC4	[more]
AT5G09380.1	9.4e-40	36.05	RNA polymerase III RPC4	[more]

BLAST of CmaCh16G002040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458357\|ref\|XP_004146914.1\|	2.2e-131	75.22	PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like [Cucumis sativus]	[more]
gi\|659107882\|ref\|XP_008453902.1\|	3.8e-131	75.52	PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like [Cucumis melo]	[more]
gi\|1009122078\|ref\|XP_015877810.1\|	5.0e-83	55.21	PREDICTED: uncharacterized protein LOC107414218 [Ziziphus jujuba]	[more]
gi\|590671470\|ref\|XP_007038340.1\|	2.6e-71	48.80	DNA binding protein, putative isoform 2 [Theobroma cacao]	[more]
gi\|1009122331\|ref\|XP_015877946.1\|	3.7e-70	55.76	PREDICTED: uncharacterized protein LOC107414350 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007811	RPC4

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005666	DNA-directed RNA polymerase III complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006383	transcription from RNA polymerase III promoter

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006383	transcription from RNA polymerase III promoter
cellular_component	GO:0005666	DNA-directed RNA polymerase III complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G002040.1	CmaCh16G002040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PANTHER	PTHR13408	DNA-DIRECTED RNA POLYMERASE III	coord: 7..324 score: 5.9E
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PFAM	PF05132	RNA_pol_Rpc4	coord: 204..313 score: 2.2
None	No IPR available	PANTHER	PTHR13408:SF3	SUBFAMILY NOT NAMED	coord: 7..324 score: 5.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G002040	Cucsa.094230	Cucumber (Gy14) v1	cgycmaB0196
CmaCh16G002040	Cla010728	Watermelon (97103) v1	cmawmB313
CmaCh16G002040	Csa4G022870	Cucumber (Chinese Long) v2	cmacuB332
CmaCh16G002040	MELO3C017658	Melon (DHL92) v3.5.1	cmameB304
CmaCh16G002040	ClCG07G016860	Watermelon (Charleston Gray)	cmawcgB302
CmaCh16G002040	CSPI04G04000	Wild cucumber (PI 183967)	cmacpiB337
CmaCh16G002040	CmoCh16G002230	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G002040	Lsi07G001030	Bottle gourd (USVL1VR-Ls)	cmalsiB323
CmaCh16G002040	Cp4.1LG14g05450	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G002040	MELO3C017658.2	Melon (DHL92) v3.6.1	cmamedB355
CmaCh16G002040	CsaV3_4G004060	Cucumber (Chinese Long) v3	cmacucB0387
CmaCh16G002040	Cla97C07G143860	Watermelon (97103) v2	cmawmbB352
CmaCh16G002040	Bhi01G002027	Wax gourd	cmawgoB0434
CmaCh16G002040	CsGy4G003920	Cucumber (Gy14) v2	cgybcmaB493
CmaCh16G002040	Carg16750	Silver-seed gourd	carcmaB1206

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G002040	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh16G002040	Cucurbita moschata (Rifu)	cmacmoB338
CmaCh16G002040	Cucurbita pepo (Zucchini)	cmacpeB342
CmaCh16G002040	Cucurbita pepo (Zucchini)	cmacpeB351
CmaCh16G002040	Silver-seed gourd	carcmaB0526
CmaCh16G002040	Wax gourd	cmawgoB0440