Csa4G017210 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G017210
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 2359208 .. 2359572 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAAACAAGGACTCGATGTTGTTTAAGGCTTTATTTGTTGTCATTCTCATAATTACTTCTTCCCAATATGTAGCCTTTGGAAGATTGCATATTTCTGATGCTATTCCTCATTATCGATCTGGTAAGAGTCCCAACATTATTCAACATTTATTTGATCTCAAAAACACCTTCTTATGGAGAAATAAAATTGTTATAATTTTTTAGTGTAGTTCCATGTTCTCATAGTTGTAAATATGACTGCAGATCATAAAGATGATAGGGAAAAGGAGAAGACTATTTCAAGAGTTGAACATCTTTCCCAAACTGATACCCCAAGAAAGGGTAACTATGGAGGACGTGGAGAAGGGCCAACAAGTTAA

mRNA sequence

ATGGCTTCAAACAAGGACTCGATGTTGTTTAAGGCTTTATTTGTTGTCATTCTCATAATTACTTCTTCCCAATATGTAGCCTTTGGAAGATTGCATATTTCTGATGCTATTCCTCATTATCGATCTGATCATAAAGATGATAGGGAAAAGGAGAAGACTATTTCAAGAGTTGAACATCTTTCCCAAACTGATACCCCAAGAAAGGGTAACTATGGAGGACGTGGAGAAGGGCCAACAAGTTAA

Coding sequence (CDS)

ATGGCTTCAAACAAGGACTCGATGTTGTTTAAGGCTTTATTTGTTGTCATTCTCATAATTACTTCTTCCCAATATGTAGCCTTTGGAAGATTGCATATTTCTGATGCTATTCCTCATTATCGATCTGATCATAAAGATGATAGGGAAAAGGAGAAGACTATTTCAAGAGTTGAACATCTTTCCCAAACTGATACCCCAAGAAAGGGTAACTATGGAGGACGTGGAGAAGGGCCAACAAGTTAA

Protein sequence

MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHLSQTDTPRKGNYGGRGEGPTS*
Homology
[Close]
BLAST of Csa4G017210 vs. TrEMBL
Match: A0A0A0KUB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017210 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 9.4e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60
          MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL
Sbjct: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60

Query: 61 SQTDTPRKGNYGGRGEGPTS 81
          SQTDTPRKGNYGGRGEGPTS
Sbjct: 61 SQTDTPRKGNYGGRGEGPTS 80

[Close]
BLAST of Csa4G017210 vs. NCBI nr
Match: gi|700197975|gb|KGN53133.1| (hypothetical protein Csa_4G017210 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60
          MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL
Sbjct: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60

Query: 61 SQTDTPRKGNYGGRGEGPTS 81
          SQTDTPRKGNYGGRGEGPTS
Sbjct: 61 SQTDTPRKGNYGGRGEGPTS 80

The following BLAST results are available for this feature:
BLAST of Csa4G017210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUB2_CUCSA9.4e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017210 PE=4 SV=1[more]
BLAST of Csa4G017210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197975|gb|KGN53133.1|1.3e-37100.00hypothetical protein Csa_4G017210 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G017210.1Csa4G017210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G017210ClCG07G016750Watermelon (Charleston Gray)cuwcgB319
Csa4G017210Cla97C07G143750Watermelon (97103) v2cuwmbB316
Csa4G017210CSPI04G03870Wild cucumber (PI 183967)cpicuB182
Csa4G017210CmaCh16G001960Cucurbita maxima (Rimu)cmacuB332
Csa4G017210CmoCh16G002130Cucurbita moschata (Rifu)cmocuB321
Csa4G017210CsGy4G003750Cucumber (Gy14) v2cgybcuB165
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G017210Wax gourdcuwgoB368
Csa4G017210Cucumber (Gy14) v1cgycuB102
Csa4G017210Cucurbita maxima (Rimu)cmacuB710
Csa4G017210Cucurbita moschata (Rifu)cmocuB700
Csa4G017210Melon (DHL92) v3.5.1cumeB312
Csa4G017210Watermelon (97103) v1cuwmB312
Csa4G017210Cucurbita pepo (Zucchini)cpecuB401
Csa4G017210Bottle gourd (USVL1VR-Ls)culsiB303
Csa4G017210Melon (DHL92) v3.6.1cumedB297