CSPI04G03870 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G03870
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 2410589 .. 2411213 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGCTTTTTCTAATTACAAATATATATATTGGAGAAGATATCATAATAAAAATGGCTTCAAACAAGGACTCGATGTTGTTTAAGTCTTTATTTGTTGTCATTCTCATAATTACTTCTTCCCAATATGTAGCCTTTGGAAGATTGCATATTTCTGATGCTATTCCTCATTATCGATCTGGTAAGAGTCCCAACATTATTCAACATTTATTTGATCTCAAAAACACCTTATTATGGAGAAATAAAATTGTTATAATTTTTTAGTGTAGTTTCATGTTCTCATAGTTGTAAATATGACTGCAGATCATAAAGATGATAGGGAAAAGGAGAAGACTATTTCAAGAGTTGAACATCTTTCCCAAACTGATACCCCAAGAAAGGGTAACTATGGAGGACGTGGAGAAGGGCCAACAAGTTAATTAAGACAGCTACTAAATTCATGGTTTATTTTGGGGAAAATTATATATATGTTGTCCAAAAAGTGTCCATGCTACTGTCATGATCATTATATAATTTATAGATTTTTCTTTGTTGTATTATTGGTTTAATTTGTATTTGTTTTAGGCGTGCTATGTCATATTGTGCTCACTCTAAGTTTAAACTTTCACTTGTGTACCTTCAATCAAAG

mRNA sequence

ATGGCTTCAAACAAGGACTCGATGTTGTTTAAGTCTTTATTTGTTGTCATTCTCATAATTACTTCTTCCCAATATGTAGCCTTTGGAAGATTGCATATTTCTGATGCTATTCCTCATTATCGATCTGATCATAAAGATGATAGGGAAAAGGAGAAGACTATTTCAAGAGTTGAACATCTTTCCCAAACTGATACCCCAAGAAAGGGTAACTATGGAGGACGTGGAGAAGGGCCAACAAGTTAA

Coding sequence (CDS)

ATGGCTTCAAACAAGGACTCGATGTTGTTTAAGTCTTTATTTGTTGTCATTCTCATAATTACTTCTTCCCAATATGTAGCCTTTGGAAGATTGCATATTTCTGATGCTATTCCTCATTATCGATCTGATCATAAAGATGATAGGGAAAAGGAGAAGACTATTTCAAGAGTTGAACATCTTTCCCAAACTGATACCCCAAGAAAGGGTAACTATGGAGGACGTGGAGAAGGGCCAACAAGTTAA
Homology
[Close]
BLAST of CSPI04G03870 vs. TrEMBL
Match: A0A0A0KUB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017210 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-35
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MASNKDSMLFKSLFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60
          MASNKDSMLFK+LFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL
Sbjct: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60

Query: 61 SQTDTPRKGNYGGRGEGPTS 81
          SQTDTPRKGNYGGRGEGPTS
Sbjct: 61 SQTDTPRKGNYGGRGEGPTS 80

[Close]
BLAST of CSPI04G03870 vs. NCBI nr
Match: gi|700197975|gb|KGN53133.1| (hypothetical protein Csa_4G017210 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-35
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 1 

Query: 1  MASNKDSMLFKSLFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60
          MASNKDSMLFK+LFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL
Sbjct: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60

Query: 61 SQTDTPRKGNYGGRGEGPTS 81
          SQTDTPRKGNYGGRGEGPTS
Sbjct: 61 SQTDTPRKGNYGGRGEGPTS 80

The following BLAST results are available for this feature:
BLAST of CSPI04G03870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G03870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUB2_CUCSA1.1e-3598.75Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017210 PE=4 SV=1[more]
BLAST of CSPI04G03870 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G03870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197975|gb|KGN53133.1|1.6e-3598.75hypothetical protein Csa_4G017210 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G03870.1CSPI04G03870.1mRNA