CmaCh16G001960 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G001960
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr16 : 884419 .. 885117 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAAACAACAAATCAATGCTTTGGAAGGTTTTATTTGCTATCATGCTCATTCTTTGTTCATCCCACATGGCGCTTGGAAGACATATTGCTGATGCTACCCCTCGTAGATCTTGTGAGTACCACCTTTTCAACTCTCCCATGATCGTCAATTTTAAGCATGGATTTCTTTTTTTTTTTTTTTTTTTTTTTTTGTGGCTAATTTTGTTTAAAATCTTGATTTGATCTTTTTTTGTTGGTAAATTTCTCTAAGTTTTGTTTGTTATATTTGAGTGCAGATAATGAAAACAATAAGGAGAGCATATCAAGATCTCTACTTGGTTCCCAAACTGACGTCCCAAGAAGGGGTAACTATGGAGGAGGGGAGCCATCAAGTTGATTGAAACAGCTACTTGTTCAAGCTTTCTTTTGGAGAAAAATATGTTGTCCTTCTGAATTTGTACAACTATTTATTTCTTGTAGACCTAAAATTTCTCACTTGTGGATGGAAAACTATATAGAATGAGAAACAACGAGTGATTAATATTATTATACGAGTTTGACCATGTATTTCAATCCATATTAATTTGGAAGTTGAGGGATTCGTATTATAGGATTCCTGTTCTAATACCGTATTGATTATCTGCTTCGACCTATTATGTATTGTCTTCAACCTCATAGTTTTTAAAACAACGTCTACTAAAGAGAGATTTCCAT

mRNA sequence

ATGGCTTCAAACAACAAATCAATGCTTTGGAAGGTTTTATTTGCTATCATGCTCATTCTTTGTTCATCCCACATGGCGCTTGGAAGACATATTGCTGATGCTACCCCTCATAATGAAAACAATAAGGAGAGCATATCAAGATCTCTACTTGGTTCCCAAACTGACGTCCCAAGAAGGGGTAACTATGGAGGAGGGGAGCCATCAAGTTGATTGAAACAGCTACTTGTTCAAGCTTTCTTTTGGAGAAAAATATGTTGTCCTTCTGAATTTGTACAACTATTTATTTCTTGTAGACCTAAAATTTCTCACTTGTGGATGGAAAACTATATAGAATGAGAAACAACGAGTGATTAATATTATTATACGAGTTTGACCATGTATTTCAATCCATATTAATTTGGAAGTTGAGGGATTCGTATTATAGGATTCCTGTTCTAATACCGTATTGATTATCTGCTTCGACCTATTATGTATTGTCTTCAACCTCATAGTTTTTAAAACAACGTCTACTAAAGAGAGATTTCCAT

Coding sequence (CDS)

ATGGCTTCAAACAACAAATCAATGCTTTGGAAGGTTTTATTTGCTATCATGCTCATTCTTTGTTCATCCCACATGGCGCTTGGAAGACATATTGCTGATGCTACCCCTCATAATGAAAACAATAAGGAGAGCATATCAAGATCTCTACTTGGTTCCCAAACTGACGTCCCAAGAAGGGGTAACTATGGAGGAGGGGAGCCATCAAGTTGA

Protein sequence

MASNNKSMLWKVLFAIMLILCSSHMALGRHIADATPHNENNKESISRSLLGSQTDVPRRGNYGGGEPSS
Homology
[Close]
BLAST of CmaCh16G001960 vs. TrEMBL
Match: A0A0A0KUB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017210 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-06
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1 

Query: 1  MASNNKSMLWKVLFAIMLILCSS-HMALGR-HIADATPH-------NENNKESISRSLLG 60
          MASN  SML+K LF ++LI+ SS ++A GR HI+DA PH       +   +++ISR    
Sbjct: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60

Query: 61 SQTDVPRRGNYGG 65
          SQTD PR+GNYGG
Sbjct: 61 SQTDTPRKGNYGG 73

[Close]
BLAST of CmaCh16G001960 vs. NCBI nr
Match: gi|700197975|gb|KGN53133.1| (hypothetical protein Csa_4G017210 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1 

Query: 1  MASNNKSMLWKVLFAIMLILCSS-HMALGR-HIADATPH-------NENNKESISRSLLG 60
          MASN  SML+K LF ++LI+ SS ++A GR HI+DA PH       +   +++ISR    
Sbjct: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60

Query: 61 SQTDVPRRGNYGG 65
          SQTD PR+GNYGG
Sbjct: 61 SQTDTPRKGNYGG 73

The following BLAST results are available for this feature:
BLAST of CmaCh16G001960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh16G001960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUB2_CUCSA1.6e-0650.68Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017210 PE=4 SV=1[more]
BLAST of CmaCh16G001960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh16G001960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197975|gb|KGN53133.1|2.3e-0650.68hypothetical protein Csa_4G017210 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G001960.1CmaCh16G001960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh16G001960Csa4G017210Cucumber (Chinese Long) v2cmacuB332
CmaCh16G001960ClCG07G016750Watermelon (Charleston Gray)cmawcgB302
CmaCh16G001960CSPI04G03870Wild cucumber (PI 183967)cmacpiB337
CmaCh16G001960CmoCh16G002130Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G001960CsaV3_4G003890Cucumber (Chinese Long) v3cmacucB0387
CmaCh16G001960Cla97C07G143750Watermelon (97103) v2cmawmbB352
CmaCh16G001960CsGy4G003750Cucumber (Gy14) v2cgybcmaB493
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G001960Cucurbita maxima (Rimu)cmacmaB345
CmaCh16G001960Cucurbita maxima (Rimu)cmacmaB351
CmaCh16G001960Cucurbita moschata (Rifu)cmacmoB338
CmaCh16G001960Cucurbita pepo (Zucchini)cmacpeB342
CmaCh16G001960Cucurbita pepo (Zucchini)cmacpeB344
CmaCh16G001960Cucurbita pepo (Zucchini)cmacpeB351
CmaCh16G001960Silver-seed gourdcarcmaB0526
CmaCh16G001960Silver-seed gourdcarcmaB1206