ClCG07G016750 (gene) Watermelon (Charleston Gray)

Overview
NameClCG07G016750
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr07 : 33273751 .. 33274500 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAATGGCTTCAAACAAGAACTCAATGGGTTTTAAGGTTTTATTTGTTGTTATGCTCATTCTTACTTCTTCCCAATATGTGGCGTTTGGAAGACATATTGCTGATGCTACTCCTCATCGATCTTGTAAGATAACCCTAATCAATGTCAAATTTAAGGATCTCCCTTTCTGATTTCGATGTTTTTCATGTACGTAACACTAGTTTCATGCAAAAACACCATCTATTATACACTAATTGTTTTTCTTCAAAGTTTTGTATATGGAGAGACAAAATTGTCCTCCCCTATACATATGGAGATTTTTTTTTCACTGTTTCGTGACAATATCTCTTAATTAGTTTAGTTTGTGGGGTAATTATTTTAAATGACAAAACTACTAAAAAAATAATATTAAATATAGAGAAAAAATGTTATTTTTTTCAAAGGGATAGACAGTAATAAACAACTATAAACTTCTATCAATATATATCATTAATAAGTTGACTTATTTTGCGGTGTATAAAAACAGTCCGTGATTTTTCCTTTCTTAAGTGTTAGTGTTATGTGTACTTGTTCTCATATTCTTGCATATGTGCAGATCATAAAAATCATAGGGAAAAGGAGAATATTTCAAGAGTTCAACATCGTTCCCAAACTGACGTCCCAAGGAGGGGTAACTATGGAGGAAAGGGAGACGGGCCATCAAGTTAATTAAGACAGCTCCTAATTCAATTTTTATTTTGGATCACGAAGCCTAAACTTTCTCACTTGT

mRNA sequence

ATCAATGGCTTCAAACAAGAACTCAATGGGTTTTAAGGTTTTATTTGTTGTTATGCTCATTCTTACTTCTTCCCAATATGTGGCGTTTGGAAGACATATTGCTGATGCTACTCCTCATCGATCTTATCATAAAAATCATAGGGAAAAGGAGAATATTTCAAGAGTTCAACATCGTTCCCAAACTGACGTCCCAAGGAGGGGTAACTATGGAGGAAAGGGAGACGGGCCATCAAGTTAATTAAGACAGCTCCTAATTCAATTTTTATTTTGGATCACGAAGCCTAAACTTTCTCACTTGT

Coding sequence (CDS)

ATGGCTTCAAACAAGAACTCAATGGGTTTTAAGGTTTTATTTGTTGTTATGCTCATTCTTACTTCTTCCCAATATGTGGCGTTTGGAAGACATATTGCTGATGCTACTCCTCATCGATCTTATCATAAAAATCATAGGGAAAAGGAGAATATTTCAAGAGTTCAACATCGTTCCCAAACTGACGTCCCAAGGAGGGGTAACTATGGAGGAAAGGGAGACGGGCCATCAAGTTAA

Protein sequence

MASNKNSMGFKVLFVVMLILTSSQYVAFGRHIADATPHRSYHKNHREKENISRVQHRSQTDVPRRGNYGGKGDGPSS
Homology
[Close]
BLAST of ClCG07G016750 vs. TrEMBL
Match: A0A0A0KUB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017210 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-20
Identity = 55/80 (68.75%), Postives = 68/80 (85.00%), Query Frame = 1 

Query: 1  MASNKNSMGFKVLFVVMLILTSSQYVAFGR-HIADATPH-RSYHKN-HREKENISRVQHR 60
          MASNK+SM FK LFVV+LI+TSSQYVAFGR HI+DA PH RS HK+   +++ ISRV+H 
Sbjct: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60

Query: 61 SQTDVPRRGNYGGKGDGPSS 78
          SQTD PR+GNYGG+G+GP+S
Sbjct: 61 SQTDTPRKGNYGGRGEGPTS 80

[Close]
BLAST of ClCG07G016750 vs. NCBI nr
Match: gi|700197975|gb|KGN53133.1| (hypothetical protein Csa_4G017210 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-20
Identity = 55/80 (68.75%), Postives = 68/80 (85.00%), Query Frame = 1 

Query: 1  MASNKNSMGFKVLFVVMLILTSSQYVAFGR-HIADATPH-RSYHKN-HREKENISRVQHR 60
          MASNK+SM FK LFVV+LI+TSSQYVAFGR HI+DA PH RS HK+   +++ ISRV+H 
Sbjct: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60

Query: 61 SQTDVPRRGNYGGKGDGPSS 78
          SQTD PR+GNYGG+G+GP+S
Sbjct: 61 SQTDTPRKGNYGGRGEGPTS 80

The following BLAST results are available for this feature:
BLAST of ClCG07G016750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUB2_CUCSA2.9e-2068.75Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017210 PE=4 SV=1[more]
BLAST of ClCG07G016750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197975|gb|KGN53133.1|4.1e-2068.75hypothetical protein Csa_4G017210 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G016750.1ClCG07G016750.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG07G016750Csa4G017210Cucumber (Chinese Long) v2cuwcgB319
ClCG07G016750Cla97C07G143750Watermelon (97103) v2wcgwmbB307
ClCG07G016750CSPI04G03870Wild cucumber (PI 183967)cpiwcgB336
ClCG07G016750CmaCh16G001960Cucurbita maxima (Rimu)cmawcgB302
ClCG07G016750CmoCh16G002130Cucurbita moschata (Rifu)cmowcgB295
ClCG07G016750CsGy4G003750Cucumber (Gy14) v2cgybwcgB297
ClCG07G016750CsaV3_4G003890Cucumber (Chinese Long) v3cucwcgB336
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG07G016750Cucurbita pepo (Zucchini)cpewcgB403
ClCG07G016750Bottle gourd (USVL1VR-Ls)lsiwcgB407
ClCG07G016750Melon (DHL92) v3.6.1medwcgB488
ClCG07G016750Wax gourdwcgwgoB564
ClCG07G016750Cucumber (Gy14) v1cgywcgB119
ClCG07G016750Cucurbita maxima (Rimu)cmawcgB669
ClCG07G016750Cucurbita moschata (Rifu)cmowcgB671
ClCG07G016750Melon (DHL92) v3.5.1mewcgB493
ClCG07G016750Watermelon (97103) v1wcgwmB372