CmoCh16G002130 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G002130
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr16 : 935022 .. 935590 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAAACAACAAATCAATGCTTTGGAAGGTTTTATTTGCTATCATGCTCATTCTTTGTTCTTCCCACATGGCGTTTGGGAGACATATTGCTGATGCTACCCCTCGTAGATCATGTGAGTATCACCTTTTCAATTCTCCCATGATCATCAATTTTAAGCATGGATGTCTTTTTTTTTTTTTGGCTAATTTTGTTAAAAAATATTGATTTGATCTTTTTTTGTTGGTAAATTTCTTTAAGTTTTGTTTGTTATATTTGAGTGCAGATAATGAAAACAATAAGGAGAGTATATCAAGAGCTCTACTTGGTTCACAAACTGACGTCCCAAGAAGGGGTAACTATGGAGGAGGGGAGCCCTCAAGTTGATTCAAACAGCTACTTCTTCAAGCTTTCTTTTGGAGAAAAATATGTTGTCCTTTTGAATTTATACAACTATTTATTTCTTGTAGGCCTAAAATTTCTCACTTGTGGATGGAAAACTATATAGAATGAGAAACAACGAGTGATTAATATTATTATACGAGTTTGACCATGTATTTCAATCAAATTAATTCGGTAGTTGAGGG

mRNA sequence

ATGGCTTCAAACAACAAATCAATGCTTTGGAAGGTTTTATTTGCTATCATGCTCATTCTTTGTTCTTCCCACATGGCGTTTGGGAGACATATTGCTGATGCTACCCCTCGTAGATCATATAATGAAAACAATAAGGAGAGTATATCAAGAGCTCTACTTGGTTCACAAACTGACGTCCCAAGAAGGGGTAACTATGGAGGAGGGGAGCCCTCAAGTTGATTCAAACAGCTACTTCTTCAAGCTTTCTTTTGGAGAAAAATATGTTGTCCTTTTGAATTTATACAACTATTTATTTCTTGTAGGCCTAAAATTTCTCACTTGTGGATGGAAAACTATATAGAATGAGAAACAACGAGTGATTAATATTATTATACGAGTTTGACCATGTATTTCAATCAAATTAATTCGGTAGTTGAGGG

Coding sequence (CDS)

ATGGCTTCAAACAACAAATCAATGCTTTGGAAGGTTTTATTTGCTATCATGCTCATTCTTTGTTCTTCCCACATGGCGTTTGGGAGACATATTGCTGATGCTACCCCTCGTAGATCATATAATGAAAACAATAAGGAGAGTATATCAAGAGCTCTACTTGGTTCACAAACTGACGTCCCAAGAAGGGGTAACTATGGAGGAGGGGAGCCCTCAAGTTGA
Homology
[Close]
BLAST of CmoCh16G002130 vs. TrEMBL
Match: A0A0A0KUB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017210 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-07
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1 

Query: 1  MASNNKSMLWKVLFAIMLILCSS-HMAFGR-HIADATPR-RSYNENNKE---SISRALLG 60
          MASN  SML+K LF ++LI+ SS ++AFGR HI+DA P  RS +++++E   +ISR    
Sbjct: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60

Query: 61 SQTDVPRRGNYGG 68
          SQTD PR+GNYGG
Sbjct: 61 SQTDTPRKGNYGG 73

[Close]
BLAST of CmoCh16G002130 vs. NCBI nr
Match: gi|700197975|gb|KGN53133.1| (hypothetical protein Csa_4G017210 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-07
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1 

Query: 1  MASNNKSMLWKVLFAIMLILCSS-HMAFGR-HIADATPR-RSYNENNKE---SISRALLG 60
          MASN  SML+K LF ++LI+ SS ++AFGR HI+DA P  RS +++++E   +ISR    
Sbjct: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60

Query: 61 SQTDVPRRGNYGG 68
          SQTD PR+GNYGG
Sbjct: 61 SQTDTPRKGNYGG 73

The following BLAST results are available for this feature:
BLAST of CmoCh16G002130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUB2_CUCSA2.6e-0754.79Uncharacterized protein OS=Cucumis sativus GN=Csa_4G017210 PE=4 SV=1[more]
BLAST of CmoCh16G002130 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197975|gb|KGN53133.1|3.8e-0754.79hypothetical protein Csa_4G017210 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G002130.1CmoCh16G002130.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G002130CmaCh16G001960Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G002130Csa4G017210Cucumber (Chinese Long) v2cmocuB321
CmoCh16G002130ClCG07G016750Watermelon (Charleston Gray)cmowcgB295
CmoCh16G002130CSPI04G03870Wild cucumber (PI 183967)cmocpiB328
CmoCh16G002130CsaV3_4G003890Cucumber (Chinese Long) v3cmocucB0384
CmoCh16G002130Cla97C07G143750Watermelon (97103) v2cmowmbB337
CmoCh16G002130CsGy4G003750Cucumber (Gy14) v2cgybcmoB464
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G002130Silver-seed gourdcarcmoB0509
CmoCh16G002130Silver-seed gourdcarcmoB1175
CmoCh16G002130Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G002130Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G002130Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G002130Cucurbita pepo (Zucchini)cmocpeB311