Cla97C07G143750 (gene) Watermelon (97103) v2

Overview
NameCla97C07G143750
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr07 : 31251946 .. 31252630 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAAACAAGAACTCAATGGGTTTTAAGGTTTTATTTGTTGTTATGCTCATTCTTACTTCTTCCCAATATGTGGCGTTTGGAAGACATATTGCTGATGCTACTCCTCATCGATCTTGTAAGATAACCCTAATCAATGTCAAATTTAAGGATCTCCCTTTCTGATTTCGATGTTTTTCATGTACGTAACACTAGTTTCATGCAAAAACACCATCTATTATACACTAATTGTTTTTCTTCAAAGTTTTGTATATGGAGAGACAAAATTGTCCTCCCCTATACATATGGAGATTTTTTTTTCACTGTTTCGTGACAATATCTCTTAATTAGTTTAGTTTGTGGGGTAATTATTTTAAATGACAAAACTACTAAAAAAATAATATTAAATATAGAGAAAAAATGTTATTTTTTTCAAAGGGATAGACAGTAATAAACAACTATAAACTTCTATCAATATATATCATTAATAAGTTGACTTATTTTGCGGTGTATAAAAACAGTCCGTGATTTTTCCTTTCTTAAGTGTTAGTGTTATGTGTACTTGTTCTCATATTCTTGCATATGTGCAGATCATAAAAATCATAGGGAAAAGGAGAATATTTCAAGAGTTCAACATCGTTCCCAAACTGACGTCCCAAGGAGGGGTAACTATGGAGGAAAGGGAGACGGGCCATCAAGTTAA

mRNA sequence

ATGGCTTCAAACAAGAACTCAATGGGTTTTAAGGTTTTATTTGTTGTTATGCTCATTCTTACTTCTTCCCAATATGTGGCGTTTGGAAGACATATTGCTGATGCTACTCCTCATCGATCTTATCATAAAAATCATAGGGAAAAGGAGAATATTTCAAGAGTTCAACATCGTTCCCAAACTGACGTCCCAAGGAGGGGTAACTATGGAGGAAAGGGAGACGGGCCATCAAGTTAA

Coding sequence (CDS)

ATGGCTTCAAACAAGAACTCAATGGGTTTTAAGGTTTTATTTGTTGTTATGCTCATTCTTACTTCTTCCCAATATGTGGCGTTTGGAAGACATATTGCTGATGCTACTCCTCATCGATCTTATCATAAAAATCATAGGGAAAAGGAGAATATTTCAAGAGTTCAACATCGTTCCCAAACTGACGTCCCAAGGAGGGGTAACTATGGAGGAAAGGGAGACGGGCCATCAAGTTAA

Protein sequence

MASNKNSMGFKVLFVVMLILTSSQYVAFGRHIADATPHRSYHKNHREKENISRVQHRSQTDVPRRGNYGGKGDGPSS
Homology
[Close]
BLAST of Cla97C07G143750 vs. NCBI nr
Match: KGN53133.1 (hypothetical protein Csa_4G017210 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 2.3e-19
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 0 

Query: 1  MASNKNSMGFKVLFVVMLILTSSQYVAFGR-HIADATPH-RSYHKNHREKE-NISRVQHR 60
          MASNK+SM FK LFVV+LI+TSSQYVAFGR HI+DA PH RS HK+ REKE  ISRV+H 
Sbjct: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60

Query: 61 SQTDVPRRGNYGGKGDGPSS 78
          SQTD PR+GNYGG+G+GP+S
Sbjct: 61 SQTDTPRKGNYGGRGEGPTS 80

[Close]
BLAST of Cla97C07G143750 vs. TrEMBL
Match: tr|A0A0A0KUB2|A0A0A0KUB2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017210 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 0 

Query: 1  MASNKNSMGFKVLFVVMLILTSSQYVAFGR-HIADATPH-RSYHKNHREKE-NISRVQHR 60
          MASNK+SM FK LFVV+LI+TSSQYVAFGR HI+DA PH RS HK+ REKE  ISRV+H 
Sbjct: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60

Query: 61 SQTDVPRRGNYGGKGDGPSS 78
          SQTD PR+GNYGG+G+GP+S
Sbjct: 61 SQTDTPRKGNYGGRGEGPTS 80

The following BLAST results are available for this feature:
BLAST of Cla97C07G143750 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53133.12.3e-1973.75hypothetical protein Csa_4G017210 [Cucumis sativus][more]
BLAST of Cla97C07G143750 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KUB2|A0A0A0KUB2_CUCSA1.5e-1973.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017210 PE=4 SV=1[more]
BLAST of Cla97C07G143750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C07G143750 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C07G143750.1Cla97C07G143750.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..60

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C07G143750Csa4G017210Cucumber (Chinese Long) v2cuwmbB316
Cla97C07G143750ClCG07G016750Watermelon (Charleston Gray)wcgwmbB307
Cla97C07G143750CSPI04G03870Wild cucumber (PI 183967)cpiwmbB326
Cla97C07G143750CmaCh16G001960Cucurbita maxima (Rimu)cmawmbB352
Cla97C07G143750CmoCh16G002130Cucurbita moschata (Rifu)cmowmbB337
Cla97C07G143750CsGy4G003750Cucumber (Gy14) v2cgybwmbB298
Cla97C07G143750CsaV3_4G003890Cucumber (Chinese Long) v3cucwmbB324
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C07G143750Silver-seed gourdcarwmbB0199
Cla97C07G143750Cucumber (Gy14) v1cgywmbB112
Cla97C07G143750Cucurbita maxima (Rimu)cmawmbB775
Cla97C07G143750Cucurbita moschata (Rifu)cmowmbB749
Cla97C07G143750Bottle gourd (USVL1VR-Ls)lsiwmbB406
Cla97C07G143750Melon (DHL92) v3.6.1medwmbB491
Cla97C07G143750Melon (DHL92) v3.5.1mewmbB498
Cla97C07G143750Watermelon (97103) v1wmwmbB174
Cla97C07G143750Wax gourdwgowmbB210