Csa3G791540 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G791540
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Mediator of RNA polymerase II transcription subunit 7a; contains IPR009244 (Mediator complex, subunit Med7)
Location	Chr3 : 30644653 .. 30647926 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGTTTACATCTTTTATAATTTTCCTTCGGAACGCATCGGTTCTTGTTAGATTTCTTTTCCGATCAAGACTAAACCATGGCGACAGCTACCTATCCACCACCACCTCCATTTTACAAGCTCTACAAAGATTACCTGCAGGATCCGAAATCGGCACCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACCGTGAGATTTACTCTACATTCCTTTTGAGTATCGTGATTCCGTTTTCATTTCACACATTAGTTTAGTTCTTTTACCAGTTTGCGGTTTCGTTGTACGTTTCATCTTTAACTCCATAGAGTTGAAGGGATGTATGCATGTTCAAAATGTATTTAGGGTTTTCAGCTCTGAAGTTGTTGGATTCCGCTTCCAAAATCCTTCATATTTTTCTCATTTTAGTGCGGTTTTCTTGTATTTGAATCTCGAGAGTCGGTTTTGATTTCACACCCTAGTCGAATTCTTTTAGCAGTTTGAGTTTAACTGTATTTTTCATCTTTAATTCCATAGATTTGAAGGGGGACGAATGTATGTTCAGAATGTATTTAGGGTTTTTCAGTTCTGAAGTTGTTGAATTCTGCTTTAAAAATGCTTCATATTATTCTCATTTTAATGCGGATTTCTTGCATGTTTTGATTGAATTGATAATTTAAACATTGTCACGATAATTTGAATATCGAGATTCGGTTTTGATTTCAGACATTAGTTGAGTTCTTTTAGCAGTTTCAGTTTAATTGTATTTTTAATCTTTAATTCCATAGAGTTGGAGGGGACGTATGTATCTGCAAAGTGTATTTGGGGTTTTTCACTTCTGAAGTTGTTGGGTTACGCTTCCAAAATCCTTCATATTATTATCATTTTACTGCGGAATCCTTGTATATTTTGATTGGATTGATTATTGAAACAGCTTCACGATAATTGCTCTGTTTTTTGATTCTTTATCTTGATTATTCTGTTGTGATTTTAGACGGATGACGTGCTTCCAAGTTTGGAAGAGCAAGGAGTGCGCCAACTTTACCCTAGAGGGCCAAATGTTGGTAAGTATGTTTAGTTATCAGTGCTTCCAAATTGTTCTCCATCAGTGGTTTTCTATTCAATAAGAATTGTTATTTGTCTCTCAATTAAGTTAGTGTTATGCTCTAGCATTTATCTTCTGATTCCTAAGGTTCGTGGTCTCTGTTTTTGTTGGTTGATAAGAAAAGTGGATGGACTCATAGTCCCCAAGGGATGGTCACATTGTTTAAAAGGCCTGTTGTCTTTGGGAAAAACCTACTCATAGTTTGTGTTTTTGAAGCTGGAAGCCATGGGTTTTTAAAAGAATAGAATGCTTGTATTGGAGGAGGAGGGATGCTGAAGTGAAGGAACAATTTGCAATCCATCCCCATGCAAAGATTTAAAGGTTGAGGCAAATTGTAAAGAAAATGTGCAATTAGCACATGCAAAAATCAAAGTACAGCTAAAAAAAAAGATTTGATGAAGATTACCAGCTAGATTAGTAGACTTAGCCATATCTAAATTAAATTACAGAGACACACACGAGTCCCAAGACTCCTACATCATACATGTGCACGCTTACACCCACTCATACACATCCTTTTATCTACATTTTTAATCACGAAAGCTTTGCTTTACAATTGAACCTAGAACTGCAGGCAGGGAATAGTTAATCAGTTGGGGTTTTTTTTTTTTAATAAAAAAAGGTCCGATAATTTTCCCCAGTCTCTGAGCACCAGTGTGATGGTTTTAAGGCCTTGACAATCGGGTTGGGATTTTCAGATTTCTATTTCTGTGTGAGTATTTGAGTGGTTCTATTCGTGATTGTGAAGACATGTGGTACTGTATTTATAGACATGAAATGTGTTAGTGGTATTGGTTGTAATATTCTTTATAGATCTAAAATAAAGACCCTCTTTACCTACGACACTTGCTCAATGAACTTGAATGGAGTGCTTGGAGTAACTCTCTCCTCTACAGGCCTGCTCCTTAAACTAACTCACTTAGCTGACATTATTACCTGTGGTTCTTTTTCAGATTATAAGAAGGAATTGAGATCTCTGAATAGAGAATTGCAGCTTCACATTCTGGAGCTTGCTGATATTCTTGTTGAGAGGCCATCCCAATATGCAAGGAGGGTGGAAGAAATATCCCTAATATTCAAAAACTTACACCATCTGCTTAATTCTTTGCGACCACATCAGGTGGACACTTTAAAACATTTTAAATTAGTGTATCCATATTGGTGAAATCATTTCATGTTTATTGTTTATTTTTCCCTGTAGGCTAGAGCAACATTGATTCATATACTAGAACTTCAGATTGAGCGTCGTAGACAAGCTGTCGAGGATATAAAGAGGTATGCTAATAAGGGTTCTGATGGAATATATCAGAAATAAGAATGTGGAAGAATTGATACAATCACTAACCCTTTCACCACACCTCTTTTGATACATTATAAAATATCTCGGGTAAACTTAATTGCACATACAAGTTGGGACTTTTGGCCCCTTTATCAATATCATTGTTTCTTATCATATTCTTGGTGGTATGAGTCTAGTTGGTGGAGATATGTAGTATTGTAAAATTTTCAGCTAACGATTCAATGTTCTAATTACAAAGTCTTGATTTCCATTTCGAGGCACCTCTTCATTGATTATTTTGCTACTTTGCCTAGGAGGAGAGAAGAAGCACAAAGACTGCTCATGGAGTCACTTGAAACTTTGGATGGGCACTAGTACTACCTCTTTCATCAGTGTTGAATTCATAAAGTACAGATCTTGTCCATGCTGAATGTTTCGATCTCCTCGTATTCTACTGCATCTACTGATTTCATCGGTTCAGCTCAGTCAGTTCTAATGCATACACTGGTGCATCGATGACATGTCTAGGTAATTCTTAGGTATAACATCTTTGTCAATCTGTGCAAGATCCAGAAGTGACCTCTCCCCCGTTGTGATTACTTGAGCAGATTGTAATTAATTGTTTGAACTACATTGTAAGCTTTAGTTCACGGGTTCGGCATAGTGACTAAGAAACGCAGTTGAAAAGATCTGTTCTATAGATTGTACTGAGTGACAGCCTATAACCGTGAGATTGGAAGAAATTAATGCTATTGCGTCCTTGGCTTCCGTAATATTTCTCTCACTATGCATTATTGTTTGAAATACAACGATCCGCCAGGCTGTGGGATGCAGCAGTAACGATGGAGACAATGGTAACTTATCAATGAATAATTTGTTTGGTCAATTATT

mRNA sequence

ATGGCGACAGCTACCTATCCACCACCACCTCCATTTTACAAGCTCTACAAAGATTACCTGCAGGATCCGAAATCGGCACCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACCACGGATGACGTGCTTCCAAGTTTGGAAGAGCAAGGAGTGCGCCAACTTTACCCTAGAGGGCCAAATGTTGATTATAAGAAGGAATTGAGATCTCTGAATAGAGAATTGCAGCTTCACATTCTGGAGCTTGCTGATATTCTTGTTGAGAGGCCATCCCAATATGCAAGGAGGGTGGAAGAAATATCCCTAATATTCAAAAACTTACACCATCTGCTTAATTCTTTGCGACCACATCAGGCTAGAGCAACATTGATTCATATACTAGAACTTCAGATTGAGCGTCGTAGACAAGCTGTCGAGGATATAAAGAGGAGGAGAGAAGAAGCACAAAGACTGCTCATGGAGTCACTTGAAACTTTGGATGGGCACTAG

Coding sequence (CDS)

ATGGCGACAGCTACCTATCCACCACCACCTCCATTTTACAAGCTCTACAAAGATTACCTGCAGGATCCGAAATCGGCACCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACCACGGATGACGTGCTTCCAAGTTTGGAAGAGCAAGGAGTGCGCCAACTTTACCCTAGAGGGCCAAATGTTGATTATAAGAAGGAATTGAGATCTCTGAATAGAGAATTGCAGCTTCACATTCTGGAGCTTGCTGATATTCTTGTTGAGAGGCCATCCCAATATGCAAGGAGGGTGGAAGAAATATCCCTAATATTCAAAAACTTACACCATCTGCTTAATTCTTTGCGACCACATCAGGCTAGAGCAACATTGATTCATATACTAGAACTTCAGATTGAGCGTCGTAGACAAGCTGTCGAGGATATAAAGAGGAGGAGAGAAGAAGCACAAAGACTGCTCATGGAGTCACTTGAAACTTTGGATGGGCACTAG

Protein sequence

MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH*

Homology

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BLAST of Csa3G791540 vs. Swiss-Prot
Match: MED7A_ARATH (Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana GN=MED7A PE=1 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.6e-77
Identity = 137/167 (82.04%), Postives = 153/167 (91.62%), Query Frame = 1


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKDY ++P SAPEPPPPIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+DYK ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of Csa3G791540 vs. Swiss-Prot
Match: MED7B_ARATH (Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana GN=MED7B PE=1 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 5.2e-76
Identity = 135/167 (80.84%), Postives = 152/167 (91.02%), Query Frame = 1


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKD+ ++  SAPEPPPPIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+DYKKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of Csa3G791540 vs. Swiss-Prot
Match: MED7_DICDI (Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum GN=med7 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-29
Identity = 63/141 (44.68%), Postives = 92/141 (65.25%), Query Frame = 1


Query: 26  APEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDYKKELRSLNRELQLHI 85
           AP  PP +   Y+ FG  Y+T D+LPSL+E G +QLYP+G +++   EL+ LNR +  + 
Sbjct: 143 APPLPPKVGANYVQFGQTYSTVDMLPSLDESGAKQLYPKG-DIEPISELKKLNRSILFNY 202

Query: 86  LELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIERRRQAVE 145
           L+L + L+E P  Y  ++E+ISL+F N HHLLNS RPHQAR TL+ I+  QI+++ Q+ E
Sbjct: 203 LQLLETLIENPKNYQSKIEDISLLFINFHHLLNSYRPHQARETLLSIMNEQIKQKNQSNE 262

Query: 146 DIKRRREEAQRLLMESLETLD 167
            IK+  +  +  LM S + L+
Sbjct: 263 SIKKALDICKESLMNSFKNLN 282

HSP 2 Score: 35.0 bits (79), Expect = 9.4e-01
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 1


Query: 4  ATYPPPPPFYKLYKDYLQD 23
          + +PPPPPFYKLY +Y +D
Sbjct: 32 SAFPPPPPFYKLYLNYKKD 50

[Close]

BLAST of Csa3G791540 vs. Swiss-Prot
Match: MED7_AEDAE (Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti GN=MED7 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.8e-29
Identity = 64/161 (39.75%), Postives = 101/161 (62.73%), Query Frame = 1


Query: 8   PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDD-VLPSLEEQGVRQLYPRGP 67
           PP  +YKLY D       AP+PP PI+GTY  FG  ++T+D ++  LE QG ++LYP+  
Sbjct: 15  PPAQYYKLYTDENVRNNRAPKPPAPIQGTYQMFGQQFSTEDNIIRPLEAQGFKRLYPQ-- 74

Query: 68  NVDYKKELRSLNRELQLHILELADILVERPS--QYARRVEEISLIFKNLHHLLNSLRPHQ 127
           + D +KEL+ LN  L ++ L+L D+LV  P   Q A ++E+++L+F ++HHLLN  RPHQ
Sbjct: 75  HFDRRKELKKLNHSLLVNFLDLIDLLVHNPDSPQRAEKIEDLNLLFVHIHHLLNEFRPHQ 134

Query: 128 ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETL 166
           AR TL  ++ELQ  +R++  +  +   E+ + ++  +  +L
Sbjct: 135 ARETLRVMMELQKRQRQETTQRFQNHLEKVREMVNNAFASL 173

[Close]

BLAST of Csa3G791540 vs. Swiss-Prot
Match: MED7_HUMAN (Mediator of RNA polymerase II transcription subunit 7 OS=Homo sapiens GN=MED7 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-26
Identity = 63/166 (37.95%), Postives = 97/166 (58.43%), Query Frame = 1


Query: 3   TATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDD-VLPSLEEQGVRQL 62
           +A  PPP  + K Y D       AP+PPPPI+ +YM FG+ +  DD ++  LE QG+ +L
Sbjct: 8   SALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIERL 67

Query: 63  YPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYAR--RVEEISLIFKNLHHLLNS 122
           +P     D+KKELR LN  + ++ L+L DIL+  P    R  ++E++ L+F ++HHL+N 
Sbjct: 68  HPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINE 127

Query: 123 LRPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETL 166
            RPHQAR TL  ++E+Q  +R +  E  ++  E    ++   L +L
Sbjct: 128 YRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171

[Close]

BLAST of Csa3G791540 vs. TrEMBL
Match: A0A0A0LBQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G791540 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.1e-91
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Csa3G791540 vs. TrEMBL
Match: A0A061F532_THECC (Mediator of RNA polymerase II transcription subunit 7 isoform 3 OS=Theobroma cacao GN=TCM_025030 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 2.4e-83
Identity = 152/167 (91.02%), Postives = 163/167 (97.60%), Query Frame = 1


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY+CFG +YTTDD+LPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGSYTTDDLLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPNVD+KKELRSLNRELQLHILELAD+LVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR+QA+EDIK RREEAQRLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKQALEDIKSRREEAQRLLKESLGTLDG 167

[Close]

BLAST of Csa3G791540 vs. TrEMBL
Match: A0A0B0PJ64_GOSAR (Putative mediator of RNA polymerase II transcription subunit 7 OS=Gossypium arboreum GN=F383_07728 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.1e-83
Identity = 150/167 (89.82%), Postives = 164/167 (98.20%), Query Frame = 1


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY+CFG NYTTDDVLPSLE+QGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLEDQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPN+D+KKELRSLNRELQLHILELAD+LVERPSQYAR+VEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELADVLVERPSQYARQVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR++A+EDIKRRREEA+RLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKEALEDIKRRREEARRLLKESLGTLDG 167

[Close]

BLAST of Csa3G791540 vs. TrEMBL
Match: A0A0D2TSC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G362800 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 3.1e-83
Identity = 150/167 (89.82%), Postives = 164/167 (98.20%), Query Frame = 1


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY+CFG NYTTDDVLPSLE+QGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLEDQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPN+D+KKELRSLNRELQLHILELAD+LVERPSQYAR+VEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELADVLVERPSQYARQVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR++A+EDIKRRREEA+RLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKEALEDIKRRREEARRLLKESLGTLDG 167

[Close]

BLAST of Csa3G791540 vs. TrEMBL
Match: M1ALK1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401009863 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 6.9e-83
Identity = 150/167 (89.82%), Postives = 164/167 (98.20%), Query Frame = 1


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           M+TATYPPPPPFY+LYKDYLQDPKSAPEPPPPIEGTY+ FGSNYTTDDVLP+LEEQGVRQ
Sbjct: 1   MSTATYPPPPPFYRLYKDYLQDPKSAPEPPPPIEGTYVLFGSNYTTDDVLPNLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPNVD+KKELR+LNRELQLHILELAD+LVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNVDFKKELRALNRELQLHILELADVLVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR+QA+EDIKRRREEAQ+LL E+L TL+G
Sbjct: 121 RPHQARATLIHILELQIQRRKQAIEDIKRRREEAQKLLKEALGTLEG 167

[Close]

BLAST of Csa3G791540 vs. TAIR10
Match: AT5G03220.1 (AT5G03220.1 Mediator complex, subunit Med7)

HSP 1 Score: 290.0 bits (741), Expect = 9.2e-79
Identity = 137/167 (82.04%), Postives = 153/167 (91.62%), Query Frame = 1


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKDY ++P SAPEPPPPIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+DYK ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of Csa3G791540 vs. TAIR10
Match: AT5G03500.1 (AT5G03500.1 Mediator complex, subunit Med7)

HSP 1 Score: 285.0 bits (728), Expect = 3.0e-77
Identity = 135/167 (80.84%), Postives = 152/167 (91.02%), Query Frame = 1


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKD+ ++  SAPEPPPPIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+DYKKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of Csa3G791540 vs. NCBI nr
Match: gi|449437536|ref|XP_004136548.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis sativus])

HSP 1 Score: 342.4 bits (877), Expect = 4.4e-91
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Csa3G791540 vs. NCBI nr
Match: gi|1009161423|ref|XP_015898889.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Ziziphus jujuba])

HSP 1 Score: 320.9 bits (821), Expect = 1.4e-84
Identity = 153/168 (91.07%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKDYLQDPKSAPEPPPPIEGTY+CFG NYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYLQDPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPNVDYKKELRSLNRELQLHILELAD+LV+RPSQYARRVE+ISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNVDYKKELRSLNRELQLHILELADVLVQRPSQYARRVEDISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARAT+IHILELQI+RR+QAVEDIKRRREEAQRLL ESL  LD H
Sbjct: 121 RPHQARATIIHILELQIQRRKQAVEDIKRRREEAQRLLKESLGALDAH 168

[Close]

BLAST of Csa3G791540 vs. NCBI nr
Match: gi|470135123|ref|XP_004303373.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 318.5 bits (815), Expect = 6.8e-84
Identity = 153/166 (92.17%), Postives = 164/166 (98.80%), Query Frame = 1


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YKLYKDYLQDPKSAPEPPPPIEGTY+C+G+NYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYKLYKDYLQDPKSAPEPPPPIEGTYICYGANYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPN+D+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLD 167
           RPHQARATLIHILELQI+RR+QAVEDIKRRREEAQ LL ESLE+L+
Sbjct: 121 RPHQARATLIHILELQIKRRKQAVEDIKRRREEAQALLKESLESLE 166

[Close]

BLAST of Csa3G791540 vs. NCBI nr
Match: gi|645271926|ref|XP_008241147.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Prunus mume])

HSP 1 Score: 316.2 bits (809), Expect = 3.4e-83
Identity = 150/166 (90.36%), Postives = 163/166 (98.19%), Query Frame = 1


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YKLYKDYLQDPKSAPEPPPPIEGTY+C+G NYTTDD+LPSLE+QGVRQ
Sbjct: 1   MATATYPPPPPYYKLYKDYLQDPKSAPEPPPPIEGTYICYGGNYTTDDILPSLEDQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPN+D+KKELRSLNRELQLHILELADILVERPSQYARRVE+ISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEDISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLD 167
           RPHQARATLIHILELQI+RR+QAVEDIKRRREEAQRLL ES+ TL+
Sbjct: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRLLKESIGTLE 166

[Close]

BLAST of Csa3G791540 vs. NCBI nr
Match: gi|590637458|ref|XP_007029122.1| (Mediator of RNA polymerase II transcription subunit 7 isoform 3 [Theobroma cacao])

HSP 1 Score: 316.2 bits (809), Expect = 3.4e-83
Identity = 152/167 (91.02%), Postives = 163/167 (97.60%), Query Frame = 1


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY+CFG +YTTDD+LPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGSYTTDDLLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPNVD+KKELRSLNRELQLHILELAD+LVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR+QA+EDIK RREEAQRLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKQALEDIKSRREEAQRLLKESLGTLDG 167

The following BLAST results are available for this feature:

BLAST of Csa3G791540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED7A_ARATH	1.6e-77	82.04	Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana G...	[more]
MED7B_ARATH	5.2e-76	80.84	Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana G...	[more]
MED7_DICDI	1.3e-29	44.68	Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium ...	[more]
MED7_AEDAE	4.8e-29	39.75	Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti GN=MED7 P...	[more]
MED7_HUMAN	1.0e-26	37.95	Mediator of RNA polymerase II transcription subunit 7 OS=Homo sapiens GN=MED7 PE...	[more]

BLAST of Csa3G791540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBQ7_CUCSA	3.1e-91	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G791540 PE=4 SV=1	[more]
A0A061F532_THECC	2.4e-83	91.02	Mediator of RNA polymerase II transcription subunit 7 isoform 3 OS=Theobroma cac...	[more]
A0A0B0PJ64_GOSAR	3.1e-83	89.82	Putative mediator of RNA polymerase II transcription subunit 7 OS=Gossypium arbo...	[more]
A0A0D2TSC4_GOSRA	3.1e-83	89.82	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G362800 PE=4 SV=1	[more]
M1ALK1_SOLTU	6.9e-83	89.82	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401009863 PE=4 SV=1	[more]

BLAST of Csa3G791540 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G03220.1	9.2e-79	82.04	Mediator complex, subunit Med7	[more]
AT5G03500.1	3.0e-77	80.84	Mediator complex, subunit Med7	[more]

BLAST of Csa3G791540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437536\|ref\|XP_004136548.1\|	4.4e-91	100.00	PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis ...	[more]
gi\|1009161423\|ref\|XP_015898889.1\|	1.4e-84	91.07	PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Ziziphus juju...	[more]
gi\|470135123\|ref\|XP_004303373.1\|	6.8e-84	92.17	PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Fragaria...	[more]
gi\|645271926\|ref\|XP_008241147.1\|	3.4e-83	90.36	PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Prunus m...	[more]
gi\|590637458\|ref\|XP_007029122.1\|	3.4e-83	91.02	Mediator of RNA polymerase II transcription subunit 7 isoform 3 [Theobroma cacao...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009244	Mediatior_Med7

Vocabulary: **Molecular Function**
Term	Definition
GO:0001104	RNA polymerase II transcription cofactor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity
molecular_function	GO:0003712	transcription cofactor activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU087886	cucumber EST collection version 3.0	transcribed_cluster
CU125727	cucumber EST collection version 3.0	transcribed_cluster
CU147173	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G791540.1	Csa3G791540.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU125727	CU125727	transcribed_cluster
CU147173	CU147173	transcribed_cluster
CU087886	CU087886	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009244	Mediator complex, subunit Med7	PANTHER	PTHR21428	FAMILY NOT NAMED	coord: 1..165 score: 5.2
IPR009244	Mediator complex, subunit Med7	PFAM	PF05983	Med7	coord: 4..157 score: 6.2
None	No IPR available	unknown	Coil	Coil	coord: 67..87 score: -coord: 130..164 scor
None	No IPR available	unknown	SSF140718	Mediator hinge subcomplex-like	coord: 66..157 score: 1.12

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G791540	Cla017575	Watermelon (97103) v1	cuwmB198
Csa3G791540	MELO3C009592	Melon (DHL92) v3.5.1	cumeB223
Csa3G791540	ClCG10G017820	Watermelon (Charleston Gray)	cuwcgB194
Csa3G791540	Lsi03G017690	Bottle gourd (USVL1VR-Ls)	culsiB186
Csa3G791540	MELO3C009592.2	Melon (DHL92) v3.6.1	cumedB207
Csa3G791540	Cla97C10G200770	Watermelon (97103) v2	cuwmbB186
Csa3G791540	CSPI03G36120	Wild cucumber (PI 183967)	cpicuB120
Csa3G791540	Cucsa.242380	Cucumber (Gy14) v1	cgycuB344
Csa3G791540	CmaCh06G005660	Cucurbita maxima (Rimu)	cmacuB816
Csa3G791540	CmoCh06G005720	Cucurbita moschata (Rifu)	cmocuB808
Csa3G791540	Cp4.1LG08g09240	Cucurbita pepo (Zucchini)	cpecuB861
Csa3G791540	CsGy3G033560	Cucumber (Gy14) v2	cgybcuB110
Csa3G791540	Carg16255	Silver-seed gourd	carcuB0700

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G791540	Cucurbita pepo (Zucchini)	cpecuB597
Csa3G791540	Silver-seed gourd	carcuB0276
Csa3G791540	Wax gourd	cuwgoB222
Csa3G791540	Cucurbita maxima (Rimu)	cmacuB239
Csa3G791540	Cucurbita moschata (Rifu)	cmocuB226