Carg16255 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16255
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mediator of RNA polymerase II transcription subunit 7
Location	Cucurbita_argyrosperma_scaffold_077 : 348919 .. 351766 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCCAGTTGGTTCCAATTCTCATTCCGTCGATTGTTAGATTTTTCCACTAACAATGGCGACAGCTACGTATCCGCCACCGCCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCCGATCGAAGGGACCTACGTGTGCTTTGGTAGCAACTACACTGTAAGATTTACTCTCGATTCCTTCTTCATCTCTCTGAATGCATCTTGAAATGTCATTTATATGTGAAGATTCGAATTTGATTTCACATTTTTTGTTGAATTCTTTTGGCTGTTGGAGTCTTGTCGAACTTTTCATTTTTAAATAGATAAGATTTTTTAAGAACGTATGCTAAGAATGGTTTTAGGGTTTTTAGTTCCGAGGTTGTTCGTCTCTGCTTCCGAAATCTTTCATAATCTCCGTTCAGTGTGGACATTTTCGAGTTAGATTCTTTATTTGATTTGATCGAACTGATAGTTTAAACAGTGTCATGATAATCACTGTGATTTTGTTCCTTTTTCCTGATTGTTCTGTTGTGATTTTAGACCGATGATGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGGTAAGTAGATTTAGTGTAGTTACCAGTGTTCCCAAATTTGGGTCAGAATTTGTTCTCCATCAGTTGTTTTTCTATTTGATAAGAATCGCAATTATCCTCTCAAGTAAGGCAAATTTTATGCTCAAGTAATTATTCGTTTGATTTCTTAGATCTGTGGTGGTCTCTGTTTTGGTTCGGGGTAAGAATAATGCATGTATTGGTAGCCTCCAAGGGGCAGCACCATTGGCTAAGGCTCACGTTCTCTAAGTACACTTACTCAAAGTCACATGTTTGAATCTCTGGTGTAGATTTTTAAGGAAAACTCTGATGTCTTCAGAGTTTGGGCCTTGGGGCTGGCGTGGATGCCAAAGGGAATTGGGGTTTTATGATCCATCCCCAAGAATAGGTAAAAGAAGATTTGATGAAATTACTCACACATGAAACGAGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTGACACTGACATGTGTGCACTCGCTCGTGCCCATGTAGATCTCTTCCTGTCGTCATTTTTAACCACGAAAACTTGGCTTTGCAATTGAAACTAGGACTGCAGTCTTCCGGCAACTCGTATTTAAAAAAAAAAATAATCTTCCATCCTTTGGGGCGTACTCTAAAAGAAGTCAAACCTATTGCAAATATTTCTCCTAAGCTCTGAGCACGGAGTGTCATTGCTTTAAAGTCCTGTTAAAAGAAGAATACAAATGTTTGGGACATTCCTATTTCTATTGTCGTGGAAGAAACGAATCAAATTCCTGTTCGTGAAAACATTTGAAAATGTATTTAAAGACATGAAAATGTGTAGTGGTAGTGGCTGTCATGTTCTTAATAGATTCCTCCTGTACGGTGTAAACAAAAGAGTCTCTCTACCTGCCACTTGCTCGATGAACTTGATTTTTGATTGCTTGGAGCAACACTCTCCCCTGCAGCCCTCCCTCCCAAGTAAAGTCTTTTACCTGACATTATTATTGGTGGTTCTTCCTCAGATTTTAAGAAGGAATTGAGATCTCTCAATAGGGAGCTTCAGCTTCACATCCTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCACAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGTGGTTTAGTTTTACACATTTAAACTGGACATATCGTATCGTCGAAATTATCTAATTGTCAGGTCTATCTTCCCTTGTAGGCTAGAGCTACACTCATTCATATACTAGAACTCCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGTATGTTGGTTCTGATCGAATATATTCATGTATGAATGTGTAATAACTTGTGCAATCAGCTACCCTTTCGTCACACACCTTTTTTGGATTGAATGTCGTACTTAGGATTTCTTGTCCCTTTATCCATAATCATTGTTTTGTTCTATCTTATTCTTGGTGGTTGAGACAAGGATGTGTTCTTATAAAATTTTCAGCCCATAATTCATCGTTCAAGGCTTGCTTCTGTTCTGGCTGATAACTTCTGCATCATCTCACTGATTATTTGCTACCTTTTAAAACACGTTTTGGCATAATTTTCTTGTCTAGGAGGAGAGAAGAAGCACAAAGACTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAGTCTTGTCCATGCTGAATACGTTTCGCATTCAAGATCTTTATATCCATAGTGCAGCCTTGAATGCATCGGTTCGGTCGGTTGTAATGCTTGGCTTCTACATCGACCATGCACGTAGGCTACGAATATTTGTCAATTTGTTCAAGATCTTGAAGGGGACGCCCTCTCCTGCTGTGAATACTTGAGCAGATTTGTTAATGTGTAGATTGATGGAACTACTTTGTAAACTTTGATTTACGGGTTCGGTATAGTGACTGCGATCTTACTTGAAATAGGTCGAGGTTGTATGACGGTGTCCTTGAATTCTAAGGTTATGCATAGTGTGAGTATGAGATTGAAAGAGATTAATGCTATTGCTTCTCTGGCCTCTAAAAGCATGTTTAAGCTCAACTTTATGCAAAATATTACGTTAGTTATGGTTATCTTTTTTAAGTATGATCTTAATTTAACATATTATGTTTTAAATTCCATATTAGGAATAAATAAATATGGAAAAATTAAATCGAAAAACAATTCTAAATTATTTTACAATTTTAATATGTGACCC

mRNA sequence

GTGCCAGTTGGTTCCAATTCTCATTCCGTCGATTGTTAGATTTTTCCACTAACAATGGCGACAGCTACGTATCCGCCACCGCCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCCGATCGAAGGGACCTACGTGTGCTTTGGTAGCAACTACACTACCGATGATGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGATTTTAAGAAGGAATTGAGATCTCTCAATAGGGAGCTTCAGCTTCACATCCTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCACAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGCTAGAGCTACACTCATTCATATACTAGAACTCCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGAGGAGAGAAGAAGCACAAAGACTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAGTCTTGTCCATGCTGAATACGTTTCGCATTCAAGATCTTTATATCCATAGTGCAGCCTTGAATGCATCGGTTCGGTCGGTTGTAATGCTTGGCTTCTACATCGACCATGCACGTAGGCTACGAATATTTGTCAATTTGTTCAAGATCTTGAAGGGGACGCCCTCTCCTGCTGTGAATACTTGAGCAGATTTGTTAATGTGTAGATTGATGGAACTACTTTGTAAACTTTGATTTACGGGTTCGGTATAGTGACTGCGATCTTACTTGAAATAGGTCGAGGTTGTATGACGGTGTCCTTGAATTCTAAGGTTATGCATAGTGTGAGTATGAGATTGAAAGAGATTAATGCTATTGCTTCTCTGGCCTCTAAAAGCATGTTTAAGCTCAACTTTATGCAAAATATTACGTTAGTTATGGTTATCTTTTTTAAGTATGATCTTAATTTAACATATTATGTTTTAAATTCCATATTAGGAATAAATAAATATGGAAAAATTAAATCGAAAAACAATTCTAAATTATTTTACAATTTTAATATGTGACCC

Coding sequence (CDS)

ATGGCGACAGCTACGTATCCGCCACCGCCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCCGATCGAAGGGACCTACGTGTGCTTTGGTAGCAACTACACTACCGATGATGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGATTTTAAGAAGGAATTGAGATCTCTCAATAGGGAGCTTCAGCTTCACATCCTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCACAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGCTAGAGCTACACTCATTCATATACTAGAACTCCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGAGGAGAGAAGAAGCACAAAGACTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG

Protein sequence

MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH

Homology

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BLAST of Carg16255 vs. NCBI nr
Match: XP_022937468.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita moschata])

HSP 1 Score: 322.0 bits (824), Expect = 1.2e-84
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

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BLAST of Carg16255 vs. NCBI nr
Match: XP_023539102.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319.7 bits (818), Expect = 5.9e-84
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELR LNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

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BLAST of Carg16255 vs. NCBI nr
Match: XP_023005907.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita maxima])

HSP 1 Score: 318.2 bits (814), Expect = 1.7e-83
Identity = 164/168 (97.62%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP  XX YRLYKDYSQNPKSAPEPPP IEGTYVCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPXXYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

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BLAST of Carg16255 vs. NCBI nr
Match: XP_022151348.1 (mediator of RNA polymerase II transcription subunit 7a-like [Momordica charantia])

HSP 1 Score: 315.5 bits (807), Expect = 1.1e-82
Identity = 159/168 (94.64%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP     YRLYKDY QNPKSAPEPPPPIEGTY CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYACFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQI+RRRQAVEDIKRRREEAQRL MESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLFMESLETLDGH 168

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BLAST of Carg16255 vs. NCBI nr
Match: XP_004136548.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis sativus] >XP_008443001.1 PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis melo] >KGN59263.1 hypothetical protein Csa_3G791540 [Cucumis sativus])

HSP 1 Score: 314.3 bits (804), Expect = 2.5e-82
Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP     Y+LYKDY Q+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

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BLAST of Carg16255 vs. TAIR10
Match: AT5G03220.1 (Mediator complex, subunit Med7)

HSP 1 Score: 276.6 bits (706), Expect = 1.0e-74
Identity = 141/167 (84.43%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPXXXXXYRLYKDYS+NP SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPXXXXXYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+K ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of Carg16255 vs. TAIR10
Match: AT5G03500.1 (Mediator complex, subunit Med7)

HSP 1 Score: 259.2 bits (661), Expect = 1.7e-69
Identity = 135/167 (80.84%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPXXXXX RLYKD+S+N  SAPE   PIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPXXXXXXRLYKDFSENTDSAPEXXXPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

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BLAST of Carg16255 vs. Swiss-Prot
Match: sp|Q9LYW3|MED7A_ARATH (Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana OX=3702 GN=MED7A PE=1 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.9e-73
Identity = 141/167 (84.43%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPXXXXXYRLYKDYS+NP SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPXXXXXYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+K ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

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BLAST of Carg16255 vs. Swiss-Prot
Match: sp|Q9LZD7|MED7B_ARATH (Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana OX=3702 GN=MED7B PE=1 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.1e-68
Identity = 135/167 (80.84%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPXXXXX RLYKD+S+N  SAPE   PIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPXXXXXXRLYKDFSENTDSAPEXXXPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of Carg16255 vs. Swiss-Prot
Match: sp|Q55DQ5|MED7_DICDI (Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum OX=44689 GN=med7 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-28
Identity = 65/145 (44.83%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 22  NPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDFKKELRSLNREL 81
           N   AP  PP +   YV FG  Y+T D+LPSL+E G +QLYP+G +++   EL+ LNR +
Sbjct: 139 NKPLAPPLPPKVGANYVQFGQTYSTVDMLPSLDESGAKQLYPKG-DIEPISELKKLNRSI 198

Query: 82  QLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIERRR 141
             + L+L + L+E P  Y  ++E+ISL+F N HHLLNS RPHQAR TL+ I+  QI+++ 
Sbjct: 199 LFNYLQLLETLIENPKNYQSKIEDISLLFINFHHLLNSYRPHQARETLLSIMNEQIKQKN 258

Query: 142 QAVEDIKRRREEAQRLLMESLETLD 167
           Q+ E IK+  +  +  LM S + L+
Sbjct: 259 QSNESIKKALDICKESLMNSFKNLN 282

[Close]

BLAST of Carg16255 vs. Swiss-Prot
Match: sp|Q17MI0|MED7_AEDAE (Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti OX=7159 GN=MED7 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.6e-26
Identity = 61/156 (39.10%), Postives = 101/156 (64.74%), Query Frame = 0


Query: 13  YRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDD-VLPSLEEQGVRQLYPRGPNVDFK 72
           Y+LY D +     AP+PP PI+GTY  FG  ++T+D ++  LE QG ++LYP+  + D +
Sbjct: 20  YKLYTDENVRNNRAPKPPAPIQGTYQMFGQQFSTEDNIIRPLEAQGFKRLYPQ--HFDRR 79

Query: 73  KELRSLNRELQLHILELADILVERPS--QYARRVEEISLIFKNLHHLLNSLRPHQARATL 132
           KEL+ LN  L ++ L+L D+LV  P   Q A ++E+++L+F ++HHLLN  RPHQAR TL
Sbjct: 80  KELKKLNHSLLVNFLDLIDLLVHNPDSPQRAEKIEDLNLLFVHIHHLLNEFRPHQARETL 139

Query: 133 IHILELQIERRRQAVEDIKRRREEAQRLLMESLETL 166
             ++ELQ  +R++  +  +   E+ + ++  +  +L
Sbjct: 140 RVMMELQKRQRQETTQRFQNHLEKVREMVNNAFASL 173

[Close]

BLAST of Carg16255 vs. Swiss-Prot
Match: sp|Q7PR68|MED7_ANOGA (Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles gambiae OX=7165 GN=MED7 PE=3 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 4.0e-23
Identity = 59/154 (38.31%), Postives = 96/154 (62.34%), Query Frame = 0


Query: 15  LYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDD-VLPSLEEQGVRQLYPRGPNVDFKKE 74
           LY D +     AP+PP PI+  Y  FGS ++ DD ++  LE QG ++LYP+  + D +KE
Sbjct: 22  LYTDENIRKNRAPKPPAPIQDAYTMFGSPFSNDDNIIRPLESQGFKRLYPQ--HFDRRKE 81

Query: 75  LRSLNRELQLHILELADILVERPS--QYARRVEEISLIFKNLHHLLNSLRPHQARATLIH 134
           L+ LN  L ++ L+L D+LV  P   + A ++E++SL+F ++HHLLN  RPHQAR TL  
Sbjct: 82  LKKLNHSLLVNFLDLIDLLVHYPDSPRRAEKIEDLSLLFVHIHHLLNEFRPHQARETLRV 141

Query: 135 ILELQIERRRQAVEDIKRRREEAQRLLMESLETL 166
           ++ELQ  +R +  +  +   E+ + ++  +  +L
Sbjct: 142 MMELQKRQRIETAQRFQNHLEKVREMVKNAFASL 173

[Close]

BLAST of Carg16255 vs. TrEMBL
Match: tr|A0A1S3B7S4|A0A1S3B7S4_CUCME (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo OX=3656 GN=LOC103486732 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.6e-82
Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP     Y+LYKDY Q+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Carg16255 vs. TrEMBL
Match: tr|A0A0A0LBQ7|A0A0A0LBQ7_CUCSA (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis sativus OX=3659 GN=Csa_3G791540 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.6e-82
Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP     Y+LYKDY Q+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Carg16255 vs. TrEMBL
Match: tr|A0A1R3HEG4|A0A1R3HEG4_9ROSI (Mediator of RNA polymerase II transcription subunit 7 OS=Corchorus olitorius OX=93759 GN=COLO4_29437 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.3e-79
Identity = 156/167 (93.41%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPXXXX YRLYKDY QNPKSAPEPPPPIEGTYVCFG NYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPXXXXYYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPN+DFKKELRSLNRELQLHILELAD+LVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELADVLVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR+QA+EDIKRRREEAQRLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKQALEDIKRRREEAQRLLKESLGTLDG 167

[Close]

BLAST of Carg16255 vs. TrEMBL
Match: tr|A0A2I4FYF4|A0A2I4FYF4_9ROSI (Mediator of RNA polymerase II transcription subunit 7 OS=Juglans regia OX=51240 GN=LOC109003137 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 2.2e-79
Identity = 151/168 (89.88%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP XXX YRLY+DY QNPKSAPEPPPPIEGTY+CFG NYTTDDV+P+LEEQGVRQ
Sbjct: 1   MATATYPPXXXYYRLYRDYLQNPKSAPEPPPPIEGTYICFGGNYTTDDVIPNLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPN+DFKKELRSLNRELQLHILELAD+LVERPSQYARRVEEISLIFKN+HHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELADVLVERPSQYARRVEEISLIFKNIHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQI+RR+QAVEDIKRRREEAQ+LL ESL TLDGH
Sbjct: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQKLLKESLATLDGH 168

[Close]

BLAST of Carg16255 vs. TrEMBL
Match: tr|A0A1Q3D1G0|A0A1Q3D1G0_CEPFO (Mediator of RNA polymerase II transcription subunit 7 OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_29566 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 5.0e-79
Identity = 152/168 (90.48%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP XXX YRLYKDY +NPKSAPEPPPP+EG YVC+G+NYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPXXXYYRLYKDYLENPKSAPEPPPPVEGAYVCYGANYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPNVDFKKELRSLNRELQLHILELAD+LVERPSQYARRVE+ISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARRVEDISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQI+RR+QAVEDIKRRREEAQ+LL ESL TLDGH
Sbjct: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQKLLKESLGTLDGH 168

The following BLAST results are available for this feature:

BLAST of Carg16255 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937468.1	1.2e-84	100.00	mediator of RNA polymerase II transcription subunit 7a [Cucurbita moschata]	[more]
XP_023539102.1	5.9e-84	99.40	mediator of RNA polymerase II transcription subunit 7a [Cucurbita pepo subsp. pe...	[more]
XP_023005907.1	1.7e-83	97.62	mediator of RNA polymerase II transcription subunit 7a [Cucurbita maxima]	[more]
XP_022151348.1	1.1e-82	94.64	mediator of RNA polymerase II transcription subunit 7a-like [Momordica charantia...	[more]
XP_004136548.1	2.5e-82	94.05	PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis ...	[more]

BLAST of Carg16255 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G03220.1	1.0e-74	84.43	Mediator complex, subunit Med7	[more]
AT5G03500.1	1.7e-69	80.84	Mediator complex, subunit Med7	[more]

BLAST of Carg16255 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LYW3\|MED7A_ARATH	1.9e-73	84.43	Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana O...	[more]
sp\|Q9LZD7\|MED7B_ARATH	3.1e-68	80.84	Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana O...	[more]
sp\|Q55DQ5\|MED7_DICDI	1.8e-28	44.83	Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium ...	[more]
sp\|Q17MI0\|MED7_AEDAE	8.6e-26	39.10	Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti OX=7159 G...	[more]
sp\|Q7PR68\|MED7_ANOGA	4.0e-23	38.31	Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles gambiae OX=71...	[more]

BLAST of Carg16255 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B7S4\|A0A1S3B7S4_CUCME	1.6e-82	94.05	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0LBQ7\|A0A0A0LBQ7_CUCSA	1.6e-82	94.05	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis sativus OX=3659...	[more]
tr\|A0A1R3HEG4\|A0A1R3HEG4_9ROSI	1.3e-79	93.41	Mediator of RNA polymerase II transcription subunit 7 OS=Corchorus olitorius OX=...	[more]
tr\|A0A2I4FYF4\|A0A2I4FYF4_9ROSI	2.2e-79	89.88	Mediator of RNA polymerase II transcription subunit 7 OS=Juglans regia OX=51240 ...	[more]
tr\|A0A1Q3D1G0\|A0A1Q3D1G0_CEPFO	5.0e-79	90.48	Mediator of RNA polymerase II transcription subunit 7 OS=Cephalotus follicularis...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Molecular Function**
Term	Definition
GO:0003712	transcription cofactor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **INTERPRO**
Term	Definition
IPR037212	Med7/Med21-like
IPR009244	Mediatior_Med7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16255-RA	Carg16255-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 130..164
None	No IPR available	COILS	Coil	Coil	coord: 67..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
IPR009244	Mediator complex, subunit Med7	PFAM	PF05983	Med7	coord: 4..157 e-value: 7.7E-47 score: 159.8
IPR009244	Mediator complex, subunit Med7	PANTHER	PTHR21428	FAMILY NOT NAMED	coord: 3..164
IPR037212	Mediator complex, subunit Med7/Med21-like	SUPERFAMILY	SSF140718	Mediator hinge subcomplex-like	coord: 66..157

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16255	Cla017575	Watermelon (97103) v1	carwmB0677
Carg16255	Csa3G791540	Cucumber (Chinese Long) v2	carcuB0700
Carg16255	MELO3C009592	Melon (DHL92) v3.5.1	carmeB0679
Carg16255	ClCG10G017820	Watermelon (Charleston Gray)	carwcgB0656
Carg16255	CSPI03G36120	Wild cucumber (PI 183967)	carcpiB0712
Carg16255	Cucsa.242380	Cucumber (Gy14) v1	carcgyB0758
Carg16255	CmaCh06G005660	Cucurbita maxima (Rimu)	carcmaB0957
Carg16255	CmoCh06G005720	Cucurbita moschata (Rifu)	carcmoB0933
Carg16255	Lsi03G017690	Bottle gourd (USVL1VR-Ls)	carlsiB620
Carg16255	Cp4.1LG08g09240	Cucurbita pepo (Zucchini)	carcpeB0957
Carg16255	CsGy3G033560	Cucumber (Gy14) v2	carcgybB0676
Carg16255	MELO3C009592.2	Melon (DHL92) v3.6.1	carmedB0691
Carg16255	CsaV3_7G005510	Cucumber (Chinese Long) v3	carcucB0717
Carg16255	Cla97C10G200770	Watermelon (97103) v2	carwmbB0706

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16255	Wax gourd	carwgoB0795
Carg16255	Silver-seed gourd	carcarB291
Carg16255	Cucurbita maxima (Rimu)	carcmaB0955
Carg16255	Cucurbita moschata (Rifu)	carcmoB0931
Carg16255	Cucurbita pepo (Zucchini)	carcpeB0956
Carg16255	Cucumber (Chinese Long) v3	carcucB0714