Cla97C10G200770 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G200770
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Mediator of RNA polymerase II transcription subunit 7
Location	Cla97Chr10 : 30834445 .. 30836649 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACAGCTACCTATCCACCCCCTCCTCCATTTTACAAGCTCTACAAAGATTACTTGCAGGATCCGAAATCGGCACCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACTGTAAGATTTACTCTACATTCCTTTTGAATCTCGAGATTCGGTTTTGATTTCACACATTAGTTGAGTTCTTTTAGCAGTTTGAGTTTAGTTGCACTTCTCATCTTTAATTCGATAGAGTTGAAGGGACGTATGCATGTTCAGAATGTATTTAGGGTTTTCAGTTCTGAAGTTGTCGGATTCCGCTTCCAAAATCCTTCATAATATTCTCCTTTCAGTGCGGAATCGTTGTATGTTTTGATTGAATTGATAATTTAAACAGCGTCATGATAATTTATTTGATTTTTACTTCTTTATCTTGATCGCTCTGTTGTGATTTTAGACTGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATATTGGTAAGTATGTTTAGTTATCGGTGCTTCCAAATTGTTCTCCATCAATGACTTTCTATTCGATAAGAATTGTTATTTGTCTCTCAAATAAGGTTAGTTTTATGCTCAAGCATTTATCTTTTGATGATTTCTAAGGTCTGTGGTCTCTGTTTTTGATGGGGAATAAGTAAAATGTATGGACTTATAGCCCCCAAGGGGCGGTTGCATTGGCTAAGAAGGGCCTGTTGTCTTTGAGTAAAATCTACTTAGAGGTTGCGAGTTCGTATCTGGCAGCCATGGACTTTTTAAAGAGAAGAATACATGTATTGGAGGAGGAAGGATGCTGAAGTGAAGGAACAATTTACAATCCATCCCCAAAATGTAAAGGCTAAGGCAAATTACCAGAGAAAACCTGCAATTAGTATATGCCAAAATCAAAGTACAGTTAAAAGAACTAGAGCAGCGAACTTAAATGTATCCACATTAAATTAGACACACACATGAGACCGGAGACGCTACATGTGCACACTTACACCCGCCCATACACATCCTCTTCTTATCTTCATTTTTAACCCCAAGCACTTGGGTTTGCAATTGAACCTAGGACTGCAGCCAACTTATAGTTTTTTAAGAAAAGGTCCGATGATTTTCCCCCAAGTCTCTCGGCACCGTTGTGATGATTTTAAAGTCTTGACAAATATTTGACATGTGAGAGTTACCAGCATGGAATAACGAGGGTTGGGATATTCCTGTTTCCATTGTTGTGTGAGCATTTGATGGTTCATTCATGATCGTGAAGACATGTGGAACTTATTTATAGACATGAAAATGTGTAAGTGGTAATGGCTGTACTGTAATGTTCTTTGTATATCTAAATGAAAGACTCTCTTTACCTACAACTTGCTCAATGAACTTGAATAGACTGTTTGGAGTAACTCTCTCCCCTACCATCCTGCTCCCTAAACAAACTCATTTAGCTAACATTTCTTATCTGTGGTTCTTTCTCAGATTTTAAGAAGGAATTGAGATCTCTGAATAGGGAACTGCAGCTTCATATTCTAGAGCTTGCTGATATTCTTGTTGAGAGGCCATCACAATACGCAAGGAGGGTGGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGACCGCATCAGGTGGATACTTTTACACATTTAAATTCAATGTATCTGTATCAGTGAAATCATTTCATTTTGATGTTTATTTTTCCTTGTAGGCTAGAGCAACGTTGATTCATATACTAGAACTTCAGATAGAGCGTCGTAGACAAGCTGTTGAGGATATAAAAAGGTATGCTAATAAGGTTCTAATGGAATATATTACATAATATAAAAACTTGAAAAGCTGTTGTTAGTAATATGGTTCTAAAGCAGTCACTCACCCTTTCACCACACCTCGATGCATTATATAATTTCTCAGGAAAACTTGATTGAATATACAACTTGGGATTTTTGGTCCCTTTATCAATGATCATTGTTTTTCATCTTATTCTTGGTGGTACGAGTCTAGCAGGTGGAGATATGGATGTGTGCTATTGTAAAATTTTCAGCTCATACAACTTGGGATTTTTGGCCCCTTTATCAATGATGTACTTTTCTTGTCTAGGAGGAGAGAAGAAGCGCAAAGGCTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG

mRNA sequence

ATGGCAACAGCTACCTATCCACCCCCTCCTCCATTTTACAAGCTCTACAAAGATTACTTGCAGGATCCGAAATCGGCACCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACTACTGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATATTGATTTTAAGAAGGAATTGAGATCTCTGAATAGGGAACTGCAGCTTCATATTCTAGAGCTTGCTGATATTCTTGTTGAGAGGCCATCACAATACGCAAGGAGGGTGGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGACCGCATCAGGCTAGAGCAACGTTGATTCATATACTAGAACTTCAGATAGAGCGTCGTAGACAAGCTGTTGAGGATATAAAAAGGAGGAGAGAAGAAGCGCAAAGGCTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG

Coding sequence (CDS)

ATGGCAACAGCTACCTATCCACCCCCTCCTCCATTTTACAAGCTCTACAAAGATTACTTGCAGGATCCGAAATCGGCACCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACTACTGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATATTGATTTTAAGAAGGAATTGAGATCTCTGAATAGGGAACTGCAGCTTCATATTCTAGAGCTTGCTGATATTCTTGTTGAGAGGCCATCACAATACGCAAGGAGGGTGGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGACCGCATCAGGCTAGAGCAACGTTGATTCATATACTAGAACTTCAGATAGAGCGTCGTAGACAAGCTGTTGAGGATATAAAAAGGAGGAGAGAAGAAGCGCAAAGGCTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG

Protein sequence

MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQLYPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH

Homology

[Close]

BLAST of Cla97C10G200770 vs. NCBI nr
Match: XP_004136548.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis sativus] >XP_008443001.1 PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis melo] >KGN59263.1 hypothetical protein Csa_3G791540 [Cucumis sativus])

HSP 1 Score: 332.4 bits (851), Expect = 8.8e-88
Identity = 166/168 (98.81%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPN+D+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Cla97C10G200770 vs. NCBI nr
Match: XP_022151348.1 (mediator of RNA polymerase II transcription subunit 7a-like [Momordica charantia])

HSP 1 Score: 325.5 bits (833), Expect = 1.1e-85
Identity = 162/168 (96.43%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYACFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPN+DFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQI+RRRQAVEDIKRRREEAQRL MESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLFMESLETLDGH 168

[Close]

BLAST of Cla97C10G200770 vs. NCBI nr
Match: XP_023005907.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita maxima])

HSP 1 Score: 315.5 bits (807), Expect = 1.1e-82
Identity = 159/168 (94.64%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPP  +Y+LYKDY Q+PKSAPEPPP IEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPXXYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPN+DFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Cla97C10G200770 vs. NCBI nr
Match: XP_022937468.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita moschata])

HSP 1 Score: 311.6 bits (797), Expect = 1.6e-81
Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP     Y+LYKDY Q+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPN+DFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Cla97C10G200770 vs. NCBI nr
Match: XP_012435009.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Gossypium raimondii] >XP_012435010.1 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Gossypium raimondii] >XP_012435011.1 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Gossypium raimondii] >XP_016722508.1 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Gossypium hirsutum] >XP_016722509.1 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Gossypium hirsutum] >XP_017631000.1 PREDICTED: mediator of RNA polymerase II transcription subunit 7a isoform X1 [Gossypium arboreum] >XP_017631001.1 PREDICTED: mediator of RNA polymerase II transcription subunit 7a isoform X1 [Gossypium arboreum] >KHG25035.1 Putative mediator of RNA polymerase II transcription subunit 7 [Gossypium arboreum] >KJB46359.1 hypothetical protein B456_007G362800 [Gossypium raimondii] >KJB46360.1 hypothetical protein B456_007G362800 [Gossypium raimondii] >KJB46361.1 hypothetical protein B456_007G362800 [Gossypium raimondii])

HSP 1 Score: 309.3 bits (791), Expect = 8.0e-81
Identity = 152/167 (91.02%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY+CFG NYTTDDVLPSLE+QGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLEDQGVRQ 60

Query: 61  LYPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPNIDFKKELRSLNRELQLHILELAD+LVERPSQYAR+VEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELADVLVERPSQYARQVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR++A+EDIKRRREEA+RLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKEALEDIKRRREEARRLLKESLGTLDG 167

[Close]

BLAST of Cla97C10G200770 vs. TrEMBL
Match: tr|A0A1S3B7S4|A0A1S3B7S4_CUCME (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo OX=3656 GN=LOC103486732 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 5.8e-88
Identity = 166/168 (98.81%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPN+D+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Cla97C10G200770 vs. TrEMBL
Match: tr|A0A0A0LBQ7|A0A0A0LBQ7_CUCSA (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis sativus OX=3659 GN=Csa_3G791540 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 5.8e-88
Identity = 166/168 (98.81%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPN+D+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Cla97C10G200770 vs. TrEMBL
Match: tr|A0A1U8MAC9|A0A1U8MAC9_GOSHI (Mediator of RNA polymerase II transcription subunit 7 OS=Gossypium hirsutum OX=3635 GN=LOC107934559 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 5.3e-81
Identity = 152/167 (91.02%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY+CFG NYTTDDVLPSLE+QGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLEDQGVRQ 60

Query: 61  LYPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPNIDFKKELRSLNRELQLHILELAD+LVERPSQYAR+VEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELADVLVERPSQYARQVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR++A+EDIKRRREEA+RLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKEALEDIKRRREEARRLLKESLGTLDG 167

[Close]

BLAST of Cla97C10G200770 vs. TrEMBL
Match: tr|A0A0D2TSC4|A0A0D2TSC4_GOSRA (Mediator of RNA polymerase II transcription subunit 7 OS=Gossypium raimondii OX=29730 GN=B456_007G362800 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 5.3e-81
Identity = 152/167 (91.02%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY+CFG NYTTDDVLPSLE+QGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLEDQGVRQ 60

Query: 61  LYPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPNIDFKKELRSLNRELQLHILELAD+LVERPSQYAR+VEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELADVLVERPSQYARQVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR++A+EDIKRRREEA+RLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKEALEDIKRRREEARRLLKESLGTLDG 167

[Close]

BLAST of Cla97C10G200770 vs. TrEMBL
Match: tr|A0A0B0PJ64|A0A0B0PJ64_GOSAR (Mediator of RNA polymerase II transcription subunit 7 OS=Gossypium arboreum OX=29729 GN=F383_07728 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 5.3e-81
Identity = 152/167 (91.02%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY+CFG NYTTDDVLPSLE+QGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLEDQGVRQ 60

Query: 61  LYPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPNIDFKKELRSLNRELQLHILELAD+LVERPSQYAR+VEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELADVLVERPSQYARQVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR++A+EDIKRRREEA+RLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKEALEDIKRRREEARRLLKESLGTLDG 167

[Close]

BLAST of Cla97C10G200770 vs. Swiss-Prot
Match: sp|Q9LYW3|MED7A_ARATH (Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana OX=3702 GN=MED7A PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.5e-70
Identity = 132/167 (79.04%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP     Y+LYKDY ++P SAPEPPPPIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPXXXXXYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+K ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of Cla97C10G200770 vs. Swiss-Prot
Match: sp|Q9LZD7|MED7B_ARATH (Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana OX=3702 GN=MED7B PE=1 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.5e-65
Identity = 126/167 (75.45%), Postives = 145/167 (86.83%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP      +LYKD+ ++  SAPE   PIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPXXXXXXRLYKDFSENTDSAPEXXXPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of Cla97C10G200770 vs. Swiss-Prot
Match: sp|Q55DQ5|MED7_DICDI (Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum OX=44689 GN=med7 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.0e-28
Identity = 64/141 (45.39%), Postives = 94/141 (66.67%), Query Frame = 0


Query: 26  APEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQLYPRGPNIDFKKELRSLNRELQLHI 85
           AP  PP +   Y+ FG  Y+T D+LPSL+E G +QLYP+G +I+   EL+ LNR +  + 
Sbjct: 143 APPLPPKVGANYVQFGQTYSTVDMLPSLDESGAKQLYPKG-DIEPISELKKLNRSILFNY 202

Query: 86  LELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIERRRQAVE 145
           L+L + L+E P  Y  ++E+ISL+F N HHLLNS RPHQAR TL+ I+  QI+++ Q+ E
Sbjct: 203 LQLLETLIENPKNYQSKIEDISLLFINFHHLLNSYRPHQARETLLSIMNEQIKQKNQSNE 262

Query: 146 DIKRRREEAQRLLMESLETLD 167
            IK+  +  +  LM S + L+
Sbjct: 263 SIKKALDICKESLMNSFKNLN 282

[Close]

BLAST of Cla97C10G200770 vs. Swiss-Prot
Match: sp|Q17MI0|MED7_AEDAE (Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti OX=7159 GN=MED7 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.7e-26
Identity = 64/161 (39.75%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 8   PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDD-VLPSLEEQGVRQLYPRGP 67
           PP  +YKLY D       AP+PP PI+GTY  FG  ++T+D ++  LE QG ++LYP+  
Sbjct: 15  PPAQYYKLYTDENVRNNRAPKPPAPIQGTYQMFGQQFSTEDNIIRPLEAQGFKRLYPQ-- 74

Query: 68  NIDFKKELRSLNRELQLHILELADILVERPS--QYARRVEEISLIFKNLHHLLNSLRPHQ 127
           + D +KEL+ LN  L ++ L+L D+LV  P   Q A ++E+++L+F ++HHLLN  RPHQ
Sbjct: 75  HFDRRKELKKLNHSLLVNFLDLIDLLVHNPDSPQRAEKIEDLNLLFVHIHHLLNEFRPHQ 134

Query: 128 ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETL 166
           AR TL  ++ELQ  +R++  +  +   E+ + ++  +  +L
Sbjct: 135 ARETLRVMMELQKRQRQETTQRFQNHLEKVREMVNNAFASL 173

[Close]

BLAST of Cla97C10G200770 vs. Swiss-Prot
Match: sp|Q3T123|MED7_BOVIN (Mediator of RNA polymerase II transcription subunit 7 OS=Bos taurus OX=9913 GN=MED7 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.0e-24
Identity = 63/166 (37.95%), Postives = 98/166 (59.04%), Query Frame = 0


Query: 3   TATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDD-VLPSLEEQGVRQL 62
           +A  PPP  + K Y D       AP+PPPPI+ +YM FG+ +  DD ++  LE QG+ +L
Sbjct: 8   SALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIERL 67

Query: 63  YPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYAR--RVEEISLIFKNLHHLLNS 122
           +P     D KKELR LN  + ++ L+L DIL+  P    R  ++E++ L+F ++HHL+N 
Sbjct: 68  HPM--QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINE 127

Query: 123 LRPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETL 166
            RPHQAR TL  ++E+Q  +R +  E  ++  E    ++   L +L
Sbjct: 128 YRPHQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171

[Close]

BLAST of Cla97C10G200770 vs. TAIR10
Match: AT5G03220.1 (Mediator complex, subunit Med7)

HSP 1 Score: 266.9 bits (681), Expect = 8.3e-72
Identity = 132/167 (79.04%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP     Y+LYKDY ++P SAPEPPPPIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPXXXXXYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+K ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of Cla97C10G200770 vs. TAIR10
Match: AT5G03500.1 (Mediator complex, subunit Med7)

HSP 1 Score: 249.6 bits (636), Expect = 1.4e-66
Identity = 126/167 (75.45%), Postives = 145/167 (86.83%), Query Frame = 0


Query: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP      +LYKD+ ++  SAPE   PIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPXXXXXXRLYKDFSENTDSAPEXXXPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNIDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

The following BLAST results are available for this feature:

BLAST of Cla97C10G200770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136548.1	8.8e-88	98.81	PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis ...	[more]
XP_022151348.1	1.1e-85	96.43	mediator of RNA polymerase II transcription subunit 7a-like [Momordica charantia...	[more]
XP_023005907.1	1.1e-82	94.64	mediator of RNA polymerase II transcription subunit 7a [Cucurbita maxima]	[more]
XP_022937468.1	1.6e-81	94.05	mediator of RNA polymerase II transcription subunit 7a [Cucurbita moschata]	[more]
XP_012435009.1	8.0e-81	91.02	PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Gossypium rai...	[more]

BLAST of Cla97C10G200770 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B7S4\|A0A1S3B7S4_CUCME	5.8e-88	98.81	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0LBQ7\|A0A0A0LBQ7_CUCSA	5.8e-88	98.81	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis sativus OX=3659...	[more]
tr\|A0A1U8MAC9\|A0A1U8MAC9_GOSHI	5.3e-81	91.02	Mediator of RNA polymerase II transcription subunit 7 OS=Gossypium hirsutum OX=3...	[more]
tr\|A0A0D2TSC4\|A0A0D2TSC4_GOSRA	5.3e-81	91.02	Mediator of RNA polymerase II transcription subunit 7 OS=Gossypium raimondii OX=...	[more]
tr\|A0A0B0PJ64\|A0A0B0PJ64_GOSAR	5.3e-81	91.02	Mediator of RNA polymerase II transcription subunit 7 OS=Gossypium arboreum OX=2...	[more]

BLAST of Cla97C10G200770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LYW3\|MED7A_ARATH	1.5e-70	79.04	Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana O...	[more]
sp\|Q9LZD7\|MED7B_ARATH	2.5e-65	75.45	Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana O...	[more]
sp\|Q55DQ5\|MED7_DICDI	7.0e-28	45.39	Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium ...	[more]
sp\|Q17MI0\|MED7_AEDAE	1.7e-26	39.75	Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti OX=7159 G...	[more]
sp\|Q3T123\|MED7_BOVIN	8.0e-24	37.95	Mediator of RNA polymerase II transcription subunit 7 OS=Bos taurus OX=9913 GN=M...	[more]

BLAST of Cla97C10G200770 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G03220.1	8.3e-72	79.04	Mediator complex, subunit Med7	[more]
AT5G03500.1	1.4e-66	75.45	Mediator complex, subunit Med7	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003712	transcription cofactor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **INTERPRO**
Term	Definition
IPR037212	Med7/Med21-like
IPR009244	Mediatior_Med7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G200770.1	Cla97C10G200770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 130..164
IPR009244	Mediator complex, subunit Med7	PFAM	PF05983	Med7	coord: 4..157 e-value: 6.2E-47 score: 160.1
IPR009244	Mediator complex, subunit Med7	PANTHER	PTHR21428	FAMILY NOT NAMED	coord: 3..164
IPR037212	Mediator complex, subunit Med7/Med21-like	SUPERFAMILY	SSF140718	Mediator hinge subcomplex-like	coord: 67..157

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G200770	Cla017575	Watermelon (97103) v1	wmwmbB051
Cla97C10G200770	Csa3G791540	Cucumber (Chinese Long) v2	cuwmbB186
Cla97C10G200770	MELO3C009592	Melon (DHL92) v3.5.1	mewmbB316
Cla97C10G200770	ClCG10G017820	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G200770	CSPI03G36120	Wild cucumber (PI 183967)	cpiwmbB189
Cla97C10G200770	Cucsa.242380	Cucumber (Gy14) v1	cgywmbB425
Cla97C10G200770	CmaCh06G005660	Cucurbita maxima (Rimu)	cmawmbB844
Cla97C10G200770	CmoCh06G005720	Cucurbita moschata (Rifu)	cmowmbB818
Cla97C10G200770	Lsi03G017690	Bottle gourd (USVL1VR-Ls)	lsiwmbB218
Cla97C10G200770	CsGy3G033560	Cucumber (Gy14) v2	cgybwmbB178
Cla97C10G200770	MELO3C009592.2	Melon (DHL92) v3.6.1	medwmbB305
Cla97C10G200770	Carg16255	Silver-seed gourd	carwmbB0706
Cla97C10G200770	CsaV3_7G005510	Cucumber (Chinese Long) v3	cucwmbB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G200770	Silver-seed gourd	carwmbB0254
Cla97C10G200770	Cucurbita maxima (Rimu)	cmawmbB249
Cla97C10G200770	Cucurbita moschata (Rifu)	cmowmbB230
Cla97C10G200770	Cucumber (Chinese Long) v3	cucwmbB187
Cla97C10G200770	Wax gourd	wgowmbB016