CsaV3_7G005510 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G005510
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Mediator of RNA polymerase II transcription subunit 7
Location	chr7 : 3261254 .. 3265035 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TACATTAGTTTACATCTTTTATAATTTTCCTTCGGAACGCATCGGTTCTTGTTAGATTTCTTTTCCGATCAAGACTAAACCATGGCGACAGCTACCTATCCACCACCTCCATTTTACAAGCTCTACAAAGATTACCTGCAGGATCCGAAATCGGCACCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACCGTGAGATTTACTCTACATTCCTTTTGAGTATCGTGATTCCGTTTTCATTTCACACATTAGTTTAGTTCTTTTACCAGTTTGCGGTTTCGTTGTACGTTTCATCTTTAACTCCATAGAGTTGAAGGGATGTATGCATGTTCAAAATGTATTTAGGGTTTTCAGCTCTGAAGTTGTTGGATTCCGCTTCCAAAATCCTTCATATTTTTCTCATTTTAGTGCGGTTTTCTTGTATTTGAATCTCGAGAGTCGGTTTTGATTTCACACCCTAGTCGAATTCTTTTAGCAGTTTGAGTTTAACTGTATTTTTCATCTTTAATTCCATAGATTTGAAGGGGGACGAATGTATGTTCAGAATGTATTTAGGGTTTTTCAGTTCTGAAGTTGTTGAATTCTGCTTTAAAAATGCTTCATATTATTCTCATTTTAATGCGGATTTCTTGCATGTTTTGATTGAATTGATAATTTAAACATTGTCACGATAATTTGAATATCGAGATTCGGTTTTGATTTCAGACATTAGTTGAGTTCTTTTAGCAGTTTCAGTTTAATTGTATTTTTAATCTTTAATTCCATAGAGTTGGAGGGGACGTATGTATCTGCAAAGTGTATTTGGGGTTTTTCACTTCTGAAGTTGTTGGGTTACGCTTCCAAAATCCTTCATATTATTATCATTTTACTGCGGAATCCTTGTATATTTTGATTGGATTGATTATTGAAACAGCTTCACGATAATTGCTCTGTTTTTTGATTCTTTATCTTGATTATTCTGTTGTGATTTTAGACGGATGACGTGCTTCCAAGTTTGGAAGAGCAAGGAGTGCGCCAACTTTACCCTAGAGGGCCAAATGTTGGTAAGTATGTTTAGTTATCAGTGCTTCCAAATTGTTCTCCATCAGTGGTTTTCTATTCAATAAGAATTGTTATTTGTCTCTCAATTAAGTTAGTGTTATGCTCTAGCATTTATCTTCTGATTCCTAAGGTTCGTGGTCTCTGTTTTTGTTGGTTGATAAGAAAAGTGGATGGACTCATAGTCCCCAAGGGATGGTCACATTGTTTAAAAGGCCTGTTGTCTTTGGGAAAAACCTACTCATAGTTTGTGTTTTTGAAGCTGGAAGCATGGGTTTTTAAAAGAATAGAATGCTTGTATTGGAGGAGGAGGGATGCTGAAGTGAAGGAACAATTTGCAATCCATCCCCATGCAAAGATTTAAAGGTTGAGGCAAATTGTAAAGAATGTGCAATTAGCACATGCAAAAATCAAAGTACAGCTAAAAAAAAGATTTGATGAAGATTACCAGCTAGATTAGTAGACTTAGCCATATCTAAATTAAATTACAGAGACACACACGAGTCCCAAGACTCCTACATCATACATGTGCACGCTTACACCCACTCATACACATCCTTTTATCTACATTTTTAATCACGAAAGCTTTGCTTTACAATTGAACTAGAACTGCAGGCAGGGAATAGTTAATCAGTTGGGGTTTTTTTTTTTAATAAAAAAAGGTCCGATAATTTTCCCCAGTCTCTGAGCACCAGTGTGATGGTTTTAAGGCCTTGACAATCGGGTTGGGATTTTCAGATTTCTATTTCTGTGTGAGTATTTGAGTGGTTCTATTCGTGATTGTGAAGACATGTGGTACTGTATTTATAGACATGAAATGTGTTAGTGGTATTGGTTGTAATATTCTTTATAGATCTAAAATAAAGACCCTCTTTACCTACGACACTTGCTCAATGAACTTGAATGGAGTGCTTGGAGTAACTCTCTCCTCTACAGGCCTGCTCCTTAAACTAACTCACTTAGCTGACATTATTACCTGTGGTTCTTTTTCAGATTATAAGAAGGAATTGAGATCTCTGAATAGAGAATTGCAGCTTCACATTCTGGAGCTTGCTGATATTCTTGTTGAGAGGCCATCCCAATATGCAAGGAGGGTGGAAGAAATATCCCTAATATTCAAAAACTTACACCATCTGCTTAATTCTTTGCGACCACATCAGGTGGACACTTTAAAACATTTTAAATTAGTGTATCCATATTGGTGAAATCATTTCATGTTTATTGTTTATTTTTCCCTGTAGGCTAGAGCAACATTGATTCATATACTAGAACTTCAGATTGAGCGTCGTAGACAAGCTGTCGAGGATATAAAGAGGTATGCTAATAAGGGTTCTGATGGAATATATCAGAAATAAGAATGTGGAAGAATTGATACAATCACTAACCCTTTCACCACACCTCTTTTGATACATTATAAAATATCTCGGGTAAACTTAATTGCACATACAAGTTGGGACTTTTGGCCCCTTTATCAATATCATTGTTTCTTATCATATTCTTGGTGGTATGAGTCTAGTTGGTGGAGATATGTAGTATTGTAAAATTTTCAGCTAACGATTCAATGTTCTAATTACAAAGTCTTGATTTCCATTTCGAGGCACCTCTTCATTGATTATTTTGCTACTTTGCCTAGGAGGAGAGAAGAAGCACAAAGACTGCTCATGGAGTCACTTGAAACTTTGGATGGGCACTAGTACTACCTCTTTCATCAGTGTTGAATTCATAAAGTACAGATCTTGTCCATGCTGAATGTTTCGATCTCCTCGTATTCTACTGCATCTACTGATTTCATCGGTTCAGCTCAGTCAGTTCTAATGCATACACTGGTGCATCGATGACATGTCTAGGTAATTCTTAGGTATAACATCTTTGTCAATCTGTGCAAGATCCAGAAGTGACCTCTCCCCCGTTGTGATTACTTGAGCAGATTGTAATTAATTGTTTGAACTACATTGTAAGCTTTAGTTCACGGGTTCGGCATAGTGACTAAGAAACGCAGTTGAAAAGATCTGTTCTATAGATTGTACTGAGTGACAGCCTATAACCGTGAGATTGGAAGAAATTAATGCTATTGCGTCCTTGGCTTCCGTAATATTTCTCTCACTATGCATTATTGTTTGAAATACAACGATCCGCCAGGCTGTGGGATGCAGCAGTAACGATGGAGACAATGGTAACTTATCAATGAATAATTTGTTTGGTCAATTATTGATGCTTTTTTATGTGTGTGTATATATAATATATATATTTTTGTAGTATGTCAATTACTTTCAAGCTTTGCTTATTTTGTCCCGTTATTGGCTTGTCATTTTGAAGATGGAGATTGAGGTGTAATGGGTTTTGTTCTACCACGTATTCAACATGAGAGAAATGAATTTTTGAGAAAGAAGACAATTGGTACTCCTAAACTACTATACTATGCACTAAAATTCTAAATTAATTTGTATGATTTAAAAATTTAAAAATTTTACAAGGTTAATTTGACAGTAACTTATAACTATTTTCATAATTGTTCTAGCAGGAAAAGTTATGAAAAAATTCTTATTTTTCTTTGTAGGTACCAGATAGAGACATAGCCAACCCACTTCTAAATTTGGTATTAATTTGGAAAGTTGACAGATATAATTGTAACTATTGTTATTTTTATACGATTTTTGCAATTTGCCATATATTATATATATATATATTTTAGGCTGTTTCACGTGGTAGAACAAAGTTGGGCC

mRNA sequence

ATGGCGACAGCTACCTATCCACCACCTCCATTTTACAAGCTCTACAAAGATTACCTGCAGGATCCGAAATCGGCACCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACCACGGATGACGTGCTTCCAAGTTTGGAAGAGCAAGGAGTGCGCCAACTTTACCCTAGAGGGCCAAATGTTGATTATAAGAAGGAATTGAGATCTCTGAATAGAGAATTGCAGCTTCACATTCTGGAGCTTGCTGATATTCTTGTTGAGAGGCCATCCCAATATGCAAGGAGGGTGGAAGAAATATCCCTAATATTCAAAAACTTACACCATCTGCTTAATTCTTTGCGACCACATCAGGCTAGAGCAACATTGATTCATATACTAGAACTTCAGATTGAGCGTCGTAGACAAGCTGTCGAGGATATAAAGAGGAGGAGAGAAGAAGCACAAAGACTGCTCATGGAGTCACTTGAAACTTTGGATGGGCACTAG

Coding sequence (CDS)

ATGGCGACAGCTACCTATCCACCACCTCCATTTTACAAGCTCTACAAAGATTACCTGCAGGATCCGAAATCGGCACCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACCACGGATGACGTGCTTCCAAGTTTGGAAGAGCAAGGAGTGCGCCAACTTTACCCTAGAGGGCCAAATGTTGATTATAAGAAGGAATTGAGATCTCTGAATAGAGAATTGCAGCTTCACATTCTGGAGCTTGCTGATATTCTTGTTGAGAGGCCATCCCAATATGCAAGGAGGGTGGAAGAAATATCCCTAATATTCAAAAACTTACACCATCTGCTTAATTCTTTGCGACCACATCAGGCTAGAGCAACATTGATTCATATACTAGAACTTCAGATTGAGCGTCGTAGACAAGCTGTCGAGGATATAAAGAGGAGGAGAGAAGAAGCACAAAGACTGCTCATGGAGTCACTTGAAACTTTGGATGGGCACTAG

Protein sequence

MATATYPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH

Homology

[Close]

BLAST of CsaV3_7G005510 vs. NCBI nr
Match: XP_004136548.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis sativus] >XP_008443001.1 PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis melo] >KGN59263.1 hypothetical protein Csa_3G791540 [Cucumis sativus])

HSP 1 Score: 328.9 bits (842), Expect = 9.8e-87
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MATATY-PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATY PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of CsaV3_7G005510 vs. NCBI nr
Match: XP_022151348.1 (mediator of RNA polymerase II transcription subunit 7a-like [Momordica charantia])

HSP 1 Score: 319.3 bits (817), Expect = 7.7e-84
Identity = 161/168 (95.83%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MATATY-PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATY PPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYACFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQI+RRRQAVEDIKRRREEAQRL MESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIDRRRQAVEDIKRRREEAQRLFMESLETLDGH 168

[Close]

BLAST of CsaV3_7G005510 vs. NCBI nr
Match: XP_023005907.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita maxima])

HSP 1 Score: 312.4 bits (799), Expect = 9.5e-82
Identity = 159/168 (94.64%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MATATYPPP-PFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPP  +Y+LYKDY Q+PKSAPEPPP IEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPXXYYRLYKDYSQNPKSAPEPPPLIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of CsaV3_7G005510 vs. NCBI nr
Match: XP_022937468.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita moschata])

HSP 1 Score: 308.5 bits (789), Expect = 1.4e-80
Identity = 158/168 (94.05%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MATATYP-PPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP     Y+LYKDY Q+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of CsaV3_7G005510 vs. NCBI nr
Match: XP_023539102.1 (mediator of RNA polymerase II transcription subunit 7a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 306.2 bits (783), Expect = 6.8e-80
Identity = 157/168 (93.45%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MATATYP-PPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP     Y+LYKDY Q+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPXXXXXYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELR LNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of CsaV3_7G005510 vs. TAIR10
Match: AT5G03220.1 (Mediator complex, subunit Med7)

HSP 1 Score: 265.4 bits (677), Expect = 2.4e-71
Identity = 133/167 (79.64%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 1   MATATYP-PPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP     Y+LYKDY ++P SAPEPPPPIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPXXXXXYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+DYK ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 167
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of CsaV3_7G005510 vs. TAIR10
Match: AT5G03500.1 (Mediator complex, subunit Med7)

HSP 1 Score: 248.1 bits (632), Expect = 4.0e-66
Identity = 127/167 (76.05%), Postives = 145/167 (86.83%), Query Frame = 0


Query: 1   MATATYP-PPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP      +LYKD+ ++  SAPE   PIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPXXXXXXRLYKDFSENTDSAPEXXXPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+DYKKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 167
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of CsaV3_7G005510 vs. Swiss-Prot
Match: sp|Q9LYW3|MED7A_ARATH (Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana OX=3702 GN=MED7A PE=1 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.3e-70
Identity = 133/167 (79.64%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 1   MATATYP-PPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP     Y+LYKDY ++P SAPEPPPPIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPXXXXXYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+DYK ELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 167
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of CsaV3_7G005510 vs. Swiss-Prot
Match: sp|Q9LZD7|MED7B_ARATH (Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana OX=3702 GN=MED7B PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 7.2e-65
Identity = 127/167 (76.05%), Postives = 145/167 (86.83%), Query Frame = 0


Query: 1   MATATYP-PPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYP      +LYKD+ ++  SAPE   PIEGTY+CFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPXXXXXXRLYKDFSENTDSAPEXXXPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+DYKKELRSLNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 167
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of CsaV3_7G005510 vs. Swiss-Prot
Match: sp|Q55DQ5|MED7_DICDI (Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum OX=44689 GN=med7 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.1e-28
Identity = 63/141 (44.68%), Postives = 94/141 (66.67%), Query Frame = 0


Query: 25  APEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDYKKELRSLNRELQLHI 84
           AP  PP +   Y+ FG  Y+T D+LPSL+E G +QLYP+G +++   EL+ LNR +  + 
Sbjct: 143 APPLPPKVGANYVQFGQTYSTVDMLPSLDESGAKQLYPKG-DIEPISELKKLNRSILFNY 202

Query: 85  LELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIERRRQAVE 144
           L+L + L+E P  Y  ++E+ISL+F N HHLLNS RPHQAR TL+ I+  QI+++ Q+ E
Sbjct: 203 LQLLETLIENPKNYQSKIEDISLLFINFHHLLNSYRPHQARETLLSIMNEQIKQKNQSNE 262

Query: 145 DIKRRREEAQRLLMESLETLD 166
            IK+  +  +  LM S + L+
Sbjct: 263 SIKKALDICKESLMNSFKNLN 282

[Close]

BLAST of CsaV3_7G005510 vs. Swiss-Prot
Match: sp|Q17MI0|MED7_AEDAE (Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti OX=7159 GN=MED7 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-26
Identity = 64/161 (39.75%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 7   PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDD-VLPSLEEQGVRQLYPRGP 66
           PP  +YKLY D       AP+PP PI+GTY  FG  ++T+D ++  LE QG ++LYP+  
Sbjct: 15  PPAQYYKLYTDENVRNNRAPKPPAPIQGTYQMFGQQFSTEDNIIRPLEAQGFKRLYPQ-- 74

Query: 67  NVDYKKELRSLNRELQLHILELADILVERPS--QYARRVEEISLIFKNLHHLLNSLRPHQ 126
           + D +KEL+ LN  L ++ L+L D+LV  P   Q A ++E+++L+F ++HHLLN  RPHQ
Sbjct: 75  HFDRRKELKKLNHSLLVNFLDLIDLLVHNPDSPQRAEKIEDLNLLFVHIHHLLNEFRPHQ 134

Query: 127 ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETL 165
           AR TL  ++ELQ  +R++  +  +   E+ + ++  +  +L
Sbjct: 135 ARETLRVMMELQKRQRQETTQRFQNHLEKVREMVNNAFASL 173

[Close]

BLAST of CsaV3_7G005510 vs. Swiss-Prot
Match: sp|Q3T123|MED7_BOVIN (Mediator of RNA polymerase II transcription subunit 7 OS=Bos taurus OX=9913 GN=MED7 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.1e-24
Identity = 63/163 (38.65%), Postives = 98/163 (60.12%), Query Frame = 0


Query: 7   PPPP--FYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDD-VLPSLEEQGVRQLYPR 66
           PPPP  + K Y D       AP+PPPPI+ +YM FG+ +  DD ++  LE QG+ +L+P 
Sbjct: 11  PPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM 70

Query: 67  GPNVDYKKELRSLNRELQLHILELADILVERPSQYAR--RVEEISLIFKNLHHLLNSLRP 126
               D+KKELR LN  + ++ L+L DIL+  P    R  ++E++ L+F ++HHL+N  RP
Sbjct: 71  --QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINEYRP 130

Query: 127 HQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETL 165
           HQAR TL  ++E+Q  +R +  E  ++  E    ++   L +L
Sbjct: 131 HQARETLRVMMEVQKRQRLETAERFQKHLERVIEMIQNCLASL 171

[Close]

BLAST of CsaV3_7G005510 vs. TrEMBL
Match: tr|A0A1S3B7S4|A0A1S3B7S4_CUCME (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo OX=3656 GN=LOC103486732 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 6.5e-87
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MATATY-PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATY PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of CsaV3_7G005510 vs. TrEMBL
Match: tr|A0A0A0LBQ7|A0A0A0LBQ7_CUCSA (Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis sativus OX=3659 GN=Csa_3G791540 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 6.5e-87
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MATATY-PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATY PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of CsaV3_7G005510 vs. TrEMBL
Match: tr|A0A061F532|A0A061F532_THECC (Mediator of RNA polymerase II transcription subunit 7 OS=Theobroma cacao OX=3641 GN=TCM_025030 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 6.5e-79
Identity = 151/167 (90.42%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MATATY-PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATY PPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY+CFG +YTTDD+LPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGSYTTDDLLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPNVD+KKELRSLNRELQLHILELAD+LVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 167
           RPHQARATLIHILELQI+RR+QA+EDIK RREEAQRLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKQALEDIKSRREEAQRLLKESLGTLDG 167

[Close]

BLAST of CsaV3_7G005510 vs. TrEMBL
Match: tr|A0A1U8MAC9|A0A1U8MAC9_GOSHI (Mediator of RNA polymerase II transcription subunit 7 OS=Gossypium hirsutum OX=3635 GN=LOC107934559 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 8.5e-79
Identity = 149/167 (89.22%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 1   MATATY-PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATY PPPPFY+LYKDYLQ+PKSAPEPPPPIEGTY+CFG NYTTDDVLPSLE+QGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLEDQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPN+D+KKELRSLNRELQLHILELAD+LVERPSQYAR+VEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELADVLVERPSQYARQVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 167
           RPHQARATLIHILELQI+RR++A+EDIKRRREEA+RLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKEALEDIKRRREEARRLLKESLGTLDG 167

[Close]

BLAST of CsaV3_7G005510 vs. TrEMBL
Match: tr|A0A1S3VC31|A0A1S3VC31_VIGRR (Mediator of RNA polymerase II transcription subunit 7 OS=Vigna radiata var. radiata OX=3916 GN=LOC106773691 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 8.5e-79
Identity = 150/168 (89.29%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MATATY-PPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATY PPPPFY+LYKDYLQDPKSAPEPPPPIEGTY+CFG NYTT DVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQDPKSAPEPPPPIEGTYVCFGGNYTTSDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LY +GPNVD+KKELRSLN ELQLH+LELADIL+ERPSQYARRVEEIS +FKNLHHLLNSL
Sbjct: 61  LYSKGPNVDFKKELRSLNGELQLHVLELADILIERPSQYARRVEEISTVFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168
           RPHQARATLIHILELQI+RR+QAVEDIKRRREEA+RLL ESL TLDGH
Sbjct: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEARRLLNESLATLDGH 168

The following BLAST results are available for this feature:

BLAST of CsaV3_7G005510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136548.1	9.8e-87	99.40	PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis ...	[more]
XP_022151348.1	7.7e-84	95.83	mediator of RNA polymerase II transcription subunit 7a-like [Momordica charantia...	[more]
XP_023005907.1	9.5e-82	94.64	mediator of RNA polymerase II transcription subunit 7a [Cucurbita maxima]	[more]
XP_022937468.1	1.4e-80	94.05	mediator of RNA polymerase II transcription subunit 7a [Cucurbita moschata]	[more]
XP_023539102.1	6.8e-80	93.45	mediator of RNA polymerase II transcription subunit 7a [Cucurbita pepo subsp. pe...	[more]

BLAST of CsaV3_7G005510 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G03220.1	2.4e-71	79.64	Mediator complex, subunit Med7	[more]
AT5G03500.1	4.0e-66	76.05	Mediator complex, subunit Med7	[more]

BLAST of CsaV3_7G005510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LYW3\|MED7A_ARATH	4.3e-70	79.64	Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana O...	[more]
sp\|Q9LZD7\|MED7B_ARATH	7.2e-65	76.05	Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana O...	[more]
sp\|Q55DQ5\|MED7_DICDI	4.1e-28	44.68	Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium ...	[more]
sp\|Q17MI0\|MED7_AEDAE	1.0e-26	39.75	Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti OX=7159 G...	[more]
sp\|Q3T123\|MED7_BOVIN	6.1e-24	38.65	Mediator of RNA polymerase II transcription subunit 7 OS=Bos taurus OX=9913 GN=M...	[more]

BLAST of CsaV3_7G005510 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B7S4\|A0A1S3B7S4_CUCME	6.5e-87	99.40	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0LBQ7\|A0A0A0LBQ7_CUCSA	6.5e-87	99.40	Mediator of RNA polymerase II transcription subunit 7 OS=Cucumis sativus OX=3659...	[more]
tr\|A0A061F532\|A0A061F532_THECC	6.5e-79	90.42	Mediator of RNA polymerase II transcription subunit 7 OS=Theobroma cacao OX=3641...	[more]
tr\|A0A1U8MAC9\|A0A1U8MAC9_GOSHI	8.5e-79	89.22	Mediator of RNA polymerase II transcription subunit 7 OS=Gossypium hirsutum OX=3...	[more]
tr\|A0A1S3VC31\|A0A1S3VC31_VIGRR	8.5e-79	89.29	Mediator of RNA polymerase II transcription subunit 7 OS=Vigna radiata var. radi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003712	transcription cofactor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **INTERPRO**
Term	Definition
IPR037212	Med7/Med21-like
IPR009244	Mediatior_Med7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003712	transcription cofactor activity
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G005510.1	CsaV3_7G005510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 66..86
None	No IPR available	COILS	Coil	Coil	coord: 129..163
IPR009244	Mediator complex, subunit Med7	PFAM	PF05983	Med7	coord: 7..156 e-value: 1.8E-45 score: 155.3
IPR009244	Mediator complex, subunit Med7	PANTHER	PTHR21428	FAMILY NOT NAMED	coord: 7..163
IPR037212	Mediator complex, subunit Med7/Med21-like	SUPERFAMILY	SSF140718	Mediator hinge subcomplex-like	coord: 65..156

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G005510	CSPI03G36120	Wild cucumber (PI 183967)	cpicucB194
CsaV3_7G005510	Cucsa.242380	Cucumber (Gy14) v1	cgycucB368
CsaV3_7G005510	CmaCh06G005660	Cucurbita maxima (Rimu)	cmacucB1002
CsaV3_7G005510	CmoCh06G005720	Cucurbita moschata (Rifu)	cmocucB0987
CsaV3_7G005510	Cp4.1LG08g09240	Cucurbita pepo (Zucchini)	cpecucB1082
CsaV3_7G005510	CsGy3G033560	Cucumber (Gy14) v2	cgybcucB157
CsaV3_7G005510	Carg16255	Silver-seed gourd	carcucB0717
CsaV3_7G005510	Cla017575	Watermelon (97103) v1	cucwmB603
CsaV3_7G005510	MELO3C009592	Melon (DHL92) v3.5.1	cucmeB574
CsaV3_7G005510	ClCG10G017820	Watermelon (Charleston Gray)	cucwcgB557
CsaV3_7G005510	Lsi03G017690	Bottle gourd (USVL1VR-Ls)	cuclsiB556
CsaV3_7G005510	MELO3C009592.2	Melon (DHL92) v3.6.1	cucmedB560
CsaV3_7G005510	Cla97C10G200770	Watermelon (97103) v2	cucwmbB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G005510	Silver-seed gourd	carcucB0758
CsaV3_7G005510	Silver-seed gourd	carcucB0915
CsaV3_7G005510	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G005510	Cucumber (Gy14) v1	cgycucB226
CsaV3_7G005510	Cucurbita maxima (Rimu)	cmacucB0172
CsaV3_7G005510	Cucurbita maxima (Rimu)	cmacucB0638
CsaV3_7G005510	Cucurbita maxima (Rimu)	cmacucB0686
CsaV3_7G005510	Cucurbita maxima (Rimu)	cmacucB0768
CsaV3_7G005510	Cucurbita moschata (Rifu)	cmocucB0155
CsaV3_7G005510	Cucurbita moschata (Rifu)	cmocucB0259
CsaV3_7G005510	Cucurbita moschata (Rifu)	cmocucB0622
CsaV3_7G005510	Cucurbita moschata (Rifu)	cmocucB0754
CsaV3_7G005510	Cucurbita pepo (Zucchini)	cpecucB0322
CsaV3_7G005510	Cucurbita pepo (Zucchini)	cpecucB0656
CsaV3_7G005510	Cucurbita pepo (Zucchini)	cpecucB0863
CsaV3_7G005510	Cucurbita pepo (Zucchini)	cpecucB0946
CsaV3_7G005510	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G005510	Bottle gourd (USVL1VR-Ls)	cuclsiB529
CsaV3_7G005510	Melon (DHL92) v3.5.1	cucmeB548
CsaV3_7G005510	Melon (DHL92) v3.6.1	cucmedB536
CsaV3_7G005510	Watermelon (Charleston Gray)	cucwcgB564
CsaV3_7G005510	Watermelon (Charleston Gray)	cucwcgB597
CsaV3_7G005510	Watermelon (97103) v1	cucwmB614
CsaV3_7G005510	Watermelon (97103) v1	cucwmB627
CsaV3_7G005510	Watermelon (97103) v2	cucwmbB542
CsaV3_7G005510	Watermelon (97103) v2	cucwmbB574
CsaV3_7G005510	Wax gourd	cucwgoB687
CsaV3_7G005510	Wax gourd	cucwgoB707