Cp4.1LG08g09240 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g09240
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Mediator of RNA polymerase II transcription subunit 7
Location	Cp4.1LG08 : 7303458 .. 7306238 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACTCGGGTGTGCCAGTTGATTCCAATTCTCATTCTGTCGATTGTTAGATTTTTCCACTAACAATGGCGACAGCTACGTATCCGCCACCACCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCCGATCGAAGGGACCTACGTCTGCTTTGGTAGCAACTACACTGTAAGATTTACTCTCGATTCCTTCTTCATCTCTCTGAATGCATCTTGAAATGTCATTTATATGTGAAGATTCGAATTTGATTTCACATTTTTGTTGAATTCTTTTAGCTGTTGGAGTCTGGCTGAACTTTTCATTTTTTAAATAGATAAGATTTTTTAAGAACGTATGCTAAGAATGGTTTTAGGGTTTTTAGTTCCGAGGTTGTTCGTTTCTGCTTCCGAAATCTTTCATAATCTCCGTTCAGTGTGGACATTTTCGAGTTAGATTCATTATTTGATTTGATAATCTCCGTTCACTGTGATTTTATTCCTTTTTCCTGATTGTTTCGTTTTGATTTTAGACCGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGGTAAGTAGATTTAGTTTAGTTACCAGTGTTCCCAAATTTGGGTCAGAATTTGTTCTCCATCAGTTGTTTTTCTATTTGATAAGAATCGCTATTATCCTCTCAAGTAAGGCAAATTTTATGCTCAAGTAATTATTCGTTTGATTTCTTAGATCTGTGGTGGTCTCTGTTTTGGTTCGGGGTAAGAATAATGCATGTATTGGTAGCCTCCAAGGGGCAGCACCATTGGCTAAGGCTCACGGTCTCTAAGTAATCCTACTCAAAGTCACATGTTTGAATCTCGGGGGTAGATTTTTAAGGAAAGCTTTGTTGTCTTCAGAGTTTAGGCCTTGGGGCTGGCGTGGATGCCAAAGGGAAGTGAGGCTTTATAATCCATCCCCAAGACATAAAGGCTGAGGAGAATCTCTGGAAACCCTACAATTGGCCTTAACTATCTTAGAGCAGTGAACTTAACCTCACCCAAATGAAATTACACACACATGAACGAGCTAACCGCTTTTGGTCCCAAATTTTTTGGGGTCGCTTTTGACACTGATATGTGTACACTCGCACATGTTCATGTATATCTCTTCCTATTGTCATTTTTAACCACAAAAACTTGGCTTTGCAATTGAGACTAGGGCTGCAGTCTTCAGGCAACTCGTATTTAAGACAAAAAATAATCTTCCATCCTTTGGGGCGTACTCTAAAAGAACTCAAACCTATTGCAAATATTTCTCCTAAGCTCTGAGCACGGAGTGTCATTGCTTTAAAGTCCTGTTAAAAGAAGAATACAAATGTTTGGGACATTCCTATTTCTATTGTCATGGAAGAAACGAATTAAATTCCTGTTCGTGAAAACATTAGAAACTGTATTTAAAGACATGAAAATGTGTAGTGGTAGTTGCTGTCATGTTCTTAATTGATTCCTGTACAGTGTAAACAAAAGAGTCTCTTTGCTGCCACTTGCTCAATGAACTTGATTTTTGATTGCTTGGAGCAACACTCTCCCCTGCAGCCCTCCCTCTCAAGTAAAGTCTTTTACCTGACATTATTATTGGTGGTTCTTCCTCAGATTTTAAGAAGGAATTGAGATTTCTCAATAGGGAGCTTCAGCTTCACATCCTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCGCAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGTGGTTTAGTTTTACACATTTAAACTGGACATATCGTATCGTCGAAATTATCTGATTGTCAGGTCTATCTTCCCTTGTAGGCTAGAGCTACACTCATTCATATACTAGAACTTCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGTATGTTGGTTCTGATCGAATATATTCATGTATGAATGTGTAATAACTTGTGCAATCAGCTACCCTTTCGTCACACGCCTTTTTTTGGATTGAATGTCGTACTTTCTCGGGTAAACATTATTAAACCCAAAACTTAGGATTTCTTGTCCCTTTATCCATAATCATTGTTTTGTTAGGATGCGTTCTTATAAAATTTTCAGCCCATAATTCATCGTTCAAGGCTTGTTTCTGTTCTGGCTGATAACTTCTGCATCATCTCACTGATTATTTGCTACCTTTTAAAACACGTTTTGGCCTAATTTTCTTGTCTAGGAGGAGAGAAGAGGCACAAAGATTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAGTCTTGTCCATGCTGAATACGTTTTGCATTCAAGATCTTTATATCCATAGTGCAGCCTCGAATGCATCGGTTCGGTCAGTTGTAATGCTTGGCTTCTACATCGACCATGCACGTAGGCTACGAATATTTGTCAATTTGTTCAAGATCTTGAAGGGGGACACCCTTTCCTGCTGTGAATACTTTAGCAGATTTGTTAATGTGTAGATTGATGGAACTACTTTTTAAACTTTAATTCACGGGTTCGGTATAGTGACTGCGAACTTACTTGAATTAGGTCGAGGTTGTACAACCGTGTCCTTGAATTCTAAGGTTATGCATAGTGTGAGTATGAGATTGAAAGAGATTAATGCTATTGCTTCTCTGGCCTCTAAAAGCATGTTTAAGCTCCAACTTTATGCAAAATATTACGTTAGTTATGGTTATCTTTT

mRNA sequence

CAACTCGGGTGTGCCAGTTGATTCCAATTCTCATTCTGTCGATTGTTAGATTTTTCCACTAACAATGGCGACAGCTACGTATCCGCCACCACCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCCGATCGAAGGGACCTACGTCTGCTTTGGTAGCAACTACACTACCGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGATTTTAAGAAGGAATTGAGATTTCTCAATAGGGAGCTTCAGCTTCACATCCTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCGCAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGCTAGAGCTACACTCATTCATATACTAGAACTTCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGAGGAGAGAAGAGGCACAAAGATTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAGTCTTGTCCATGCTGAATACGTTTTGCATTCAAGATCTTTATATCCATAGTGCAGCCTCGAATGCATCGGTTCGGTCAGTTGTAATGCTTGGCTTCTACATCGACCATGCACGTAGGCTACGAATATTTGTCAATTTGTTCAAGATCTTGAAGGGGGACACCCTTTCCTGCTGTGAATACTTTAGCAGATTTGTTAATGTGTAGATTGATGGAACTACTTTTTAAACTTTAATTCACGGGTTCGGTATAGTGACTGCGAACTTACTTGAATTAGGTCGAGGTTGTACAACCGTGTCCTTGAATTCTAAGGTTATGCATAGTGTGAGTATGAGATTGAAAGAGATTAATGCTATTGCTTCTCTGGCCTCTAAAAGCATGTTTAAGCTCCAACTTTATGCAAAATATTACGTTAGTTATGGTTATCTTTT

Coding sequence (CDS)

ATGGCGACAGCTACGTATCCGCCACCACCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCCGATCGAAGGGACCTACGTCTGCTTTGGTAGCAACTACACTACCGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGATTTTAAGAAGGAATTGAGATTTCTCAATAGGGAGCTTCAGCTTCACATCCTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCGCAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGCTAGAGCTACACTCATTCATATACTAGAACTTCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGAGGAGAGAAGAGGCACAAAGATTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG

Protein sequence

MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH

Homology

[Close]

BLAST of Cp4.1LG08g09240 vs. Swiss-Prot
Match: MED7A_ARATH (Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana GN=MED7A PE=1 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.1e-76
Identity = 140/167 (83.83%), Postives = 155/167 (92.81%), Query Frame = 1


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYS+NP SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+K ELR LNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of Cp4.1LG08g09240 vs. Swiss-Prot
Match: MED7B_ARATH (Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana GN=MED7B PE=1 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 9.8e-75
Identity = 138/167 (82.63%), Postives = 154/167 (92.22%), Query Frame = 1


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKD+S+N  SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELR LNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of Cp4.1LG08g09240 vs. Swiss-Prot
Match: MED7_DICDI (Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum GN=med7 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-28
Identity = 66/150 (44.00%), Postives = 96/150 (64.00%), Query Frame = 1


Query: 17  KDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDFKKELRF 76
           K    N   AP  PP +   YV FG  Y+T D+LPSL+E G +QLYP+G +++   EL+ 
Sbjct: 134 KKIELNKPLAPPLPPKVGANYVQFGQTYSTVDMLPSLDESGAKQLYPKG-DIEPISELKK 193

Query: 77  LNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQ 136
           LNR +  + L+L + L+E P  Y  ++E+ISL+F N HHLLNS RPHQAR TL+ I+  Q
Sbjct: 194 LNRSILFNYLQLLETLIENPKNYQSKIEDISLLFINFHHLLNSYRPHQARETLLSIMNEQ 253

Query: 137 IERRRQAVEDIKRRREEAQRLLMESLETLD 167
           I+++ Q+ E IK+  +  +  LM S + L+
Sbjct: 254 IKQKNQSNESIKKALDICKESLMNSFKNLN 282

[Close]

BLAST of Cp4.1LG08g09240 vs. Swiss-Prot
Match: MED7_AEDAE (Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti GN=MED7 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.7e-26
Identity = 64/161 (39.75%), Postives = 104/161 (64.60%), Query Frame = 1


Query: 8   PPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDD-VLPSLEEQGVRQLYPRGP 67
           PP  YY+LY D +     AP+PP PI+GTY  FG  ++T+D ++  LE QG ++LYP+  
Sbjct: 15  PPAQYYKLYTDENVRNNRAPKPPAPIQGTYQMFGQQFSTEDNIIRPLEAQGFKRLYPQ-- 74

Query: 68  NVDFKKELRFLNRELQLHILELADILVERPS--QYARRVEEISLIFKNLHHLLNSLRPHQ 127
           + D +KEL+ LN  L ++ L+L D+LV  P   Q A ++E+++L+F ++HHLLN  RPHQ
Sbjct: 75  HFDRRKELKKLNHSLLVNFLDLIDLLVHNPDSPQRAEKIEDLNLLFVHIHHLLNEFRPHQ 134

Query: 128 ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETL 166
           AR TL  ++ELQ  +R++  +  +   E+ + ++  +  +L
Sbjct: 135 ARETLRVMMELQKRQRQETTQRFQNHLEKVREMVNNAFASL 173

[Close]

BLAST of Cp4.1LG08g09240 vs. Swiss-Prot
Match: MED7_ANOGA (Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles gambiae GN=MED7 PE=3 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-23
Identity = 62/161 (38.51%), Postives = 99/161 (61.49%), Query Frame = 1


Query: 8   PPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDD-VLPSLEEQGVRQLYPRGP 67
           PP  Y  LY D +     AP+PP PI+  Y  FGS ++ DD ++  LE QG ++LYP+  
Sbjct: 15  PPAQYINLYTDENIRKNRAPKPPAPIQDAYTMFGSPFSNDDNIIRPLESQGFKRLYPQ-- 74

Query: 68  NVDFKKELRFLNRELQLHILELADILVERPS--QYARRVEEISLIFKNLHHLLNSLRPHQ 127
           + D +KEL+ LN  L ++ L+L D+LV  P   + A ++E++SL+F ++HHLLN  RPHQ
Sbjct: 75  HFDRRKELKKLNHSLLVNFLDLIDLLVHYPDSPRRAEKIEDLSLLFVHIHHLLNEFRPHQ 134

Query: 128 ARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETL 166
           AR TL  ++ELQ  +R +  +  +   E+ + ++  +  +L
Sbjct: 135 ARETLRVMMELQKRQRIETAQRFQNHLEKVREMVKNAFASL 173

[Close]

BLAST of Cp4.1LG08g09240 vs. TrEMBL
Match: A0A0A0LBQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G791540 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.3e-85
Identity = 161/168 (95.83%), Postives = 166/168 (98.81%), Query Frame = 1


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKDY Q+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELR LNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Cp4.1LG08g09240 vs. TrEMBL
Match: A0A061F532_THECC (Mediator of RNA polymerase II transcription subunit 7 isoform 3 OS=Theobroma cacao GN=TCM_025030 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.1e-80
Identity = 153/167 (91.62%), Postives = 161/167 (96.41%), Query Frame = 1


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKDY QNPKSAPEPPPPIEGTYVCFG +YTTDD+LPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGSYTTDDLLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPNVDFKKELR LNRELQLHILELAD+LVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR+QA+EDIK RREEAQRLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKQALEDIKSRREEAQRLLKESLGTLDG 167

[Close]

BLAST of Cp4.1LG08g09240 vs. TrEMBL
Match: A0A0D2TSC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G362800 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.4e-80
Identity = 151/167 (90.42%), Postives = 162/167 (97.01%), Query Frame = 1


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKDY QNPKSAPEPPPPIEGTYVCFG NYTTDDVLPSLE+QGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLEDQGVRQ 60

Query: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPN+DFKKELR LNRELQLHILELAD+LVERPSQYAR+VEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELADVLVERPSQYARQVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR++A+EDIKRRREEA+RLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKEALEDIKRRREEARRLLKESLGTLDG 167

[Close]

BLAST of Cp4.1LG08g09240 vs. TrEMBL
Match: A0A0B0PJ64_GOSAR (Putative mediator of RNA polymerase II transcription subunit 7 OS=Gossypium arboreum GN=F383_07728 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.4e-80
Identity = 151/167 (90.42%), Postives = 162/167 (97.01%), Query Frame = 1


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKDY QNPKSAPEPPPPIEGTYVCFG NYTTDDVLPSLE+QGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLEDQGVRQ 60

Query: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPN+DFKKELR LNRELQLHILELAD+LVERPSQYAR+VEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELADVLVERPSQYARQVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR++A+EDIKRRREEA+RLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKEALEDIKRRREEARRLLKESLGTLDG 167

[Close]

BLAST of Cp4.1LG08g09240 vs. TrEMBL
Match: V4SW18_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012936mg PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 1.9e-80
Identity = 151/167 (90.42%), Postives = 160/167 (95.81%), Query Frame = 1


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATA YPPPPPYYRLYKDY QNPKSAPEPPPPIEGTY+CFG NYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATAAYPPPPPYYRLYKDYLQNPKSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPN+DFKKELR LNRELQLHILEL+D+LVERPSQYARRVE+ISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR+QAVEDIKRRREEAQR L ESL TL+G
Sbjct: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEG 167

[Close]

BLAST of Cp4.1LG08g09240 vs. TAIR10
Match: AT5G03220.1 (AT5G03220.1 Mediator complex, subunit Med7)

HSP 1 Score: 285.8 bits (730), Expect = 1.7e-77
Identity = 140/167 (83.83%), Postives = 155/167 (92.81%), Query Frame = 1


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDYS+NP SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+K ELR LNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKNELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQRLL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDG 167

[Close]

BLAST of Cp4.1LG08g09240 vs. TAIR10
Match: AT5G03500.1 (AT5G03500.1 Mediator complex, subunit Med7)

HSP 1 Score: 280.8 bits (717), Expect = 5.5e-76
Identity = 138/167 (82.63%), Postives = 154/167 (92.22%), Query Frame = 1


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKD+S+N  SAPEPPPPIEGTYVCFG NYTT+DVLPSLEEQGV Q
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLEEQGVPQ 60

Query: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+  N+D+KKELR LNRELQLHILELAD+LV+RPSQYA+R+ EIS IFKNLHHLLNSL
Sbjct: 61  LYPKDSNLDYKKELRSLNRELQLHILELADVLVDRPSQYAKRIGEISSIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHI+ELQI++R+QAVEDIKRRREEAQ LL ++  TLDG
Sbjct: 121 RPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDG 167

[Close]

BLAST of Cp4.1LG08g09240 vs. NCBI nr
Match: gi|449437536|ref|XP_004136548.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis sativus])

HSP 1 Score: 322.0 bits (824), Expect = 6.1e-85
Identity = 161/168 (95.83%), Postives = 166/168 (98.81%), Query Frame = 1


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+Y+LYKDY Q+PKSAPEPPPPIEGTY+CFGSNYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYPRGPNVD+KKELR LNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
Sbjct: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 168

[Close]

BLAST of Cp4.1LG08g09240 vs. NCBI nr
Match: gi|1009161423|ref|XP_015898889.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Ziziphus jujuba])

HSP 1 Score: 308.1 bits (788), Expect = 9.2e-81
Identity = 152/168 (90.48%), Postives = 161/168 (95.83%), Query Frame = 1


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPPYYRLYKDY Q+PKSAPEPPPPIEGTYVCFG NYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPYYRLYKDYLQDPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPNVD+KKELR LNRELQLHILELAD+LV+RPSQYARRVE+ISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNVDYKKELRSLNRELQLHILELADVLVQRPSQYARRVEDISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH 169
           RPHQARAT+IHILELQI+RR+QAVEDIKRRREEAQRLL ESL  LD H
Sbjct: 121 RPHQARATIIHILELQIQRRKQAVEDIKRRREEAQRLLKESLGALDAH 168

[Close]

BLAST of Cp4.1LG08g09240 vs. NCBI nr
Match: gi|590637458|ref|XP_007029122.1| (Mediator of RNA polymerase II transcription subunit 7 isoform 3 [Theobroma cacao])

HSP 1 Score: 307.4 bits (786), Expect = 1.6e-80
Identity = 153/167 (91.62%), Postives = 161/167 (96.41%), Query Frame = 1


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKDY QNPKSAPEPPPPIEGTYVCFG +YTTDD+LPSLEEQGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGSYTTDDLLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPNVDFKKELR LNRELQLHILELAD+LVERPSQYARRVEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNVDFKKELRSLNRELQLHILELADVLVERPSQYARRVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR+QA+EDIK RREEAQRLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKQALEDIKSRREEAQRLLKESLGTLDG 167

[Close]

BLAST of Cp4.1LG08g09240 vs. NCBI nr
Match: gi|823199741|ref|XP_012435009.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Gossypium raimondii])

HSP 1 Score: 307.0 bits (785), Expect = 2.0e-80
Identity = 151/167 (90.42%), Postives = 162/167 (97.01%), Query Frame = 1


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATATYPPPPP+YRLYKDY QNPKSAPEPPPPIEGTYVCFG NYTTDDVLPSLE+QGVRQ
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLEDQGVRQ 60

Query: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPN+DFKKELR LNRELQLHILELAD+LVERPSQYAR+VEEISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELADVLVERPSQYARQVEEISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR++A+EDIKRRREEA+RLL ESL TLDG
Sbjct: 121 RPHQARATLIHILELQIQRRKEALEDIKRRREEARRLLKESLGTLDG 167

[Close]

BLAST of Cp4.1LG08g09240 vs. NCBI nr
Match: gi|567874731|ref|XP_006429955.1| (hypothetical protein CICLE_v10012936mg [Citrus clementina])

HSP 1 Score: 306.6 bits (784), Expect = 2.7e-80
Identity = 151/167 (90.42%), Postives = 160/167 (95.81%), Query Frame = 1


Query: 1   MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQ 60
           MATA YPPPPPYYRLYKDY QNPKSAPEPPPPIEGTY+CFG NYTTDDVLPSLEEQGVRQ
Sbjct: 1   MATAAYPPPPPYYRLYKDYLQNPKSAPEPPPPIEGTYICFGGNYTTDDVLPSLEEQGVRQ 60

Query: 61  LYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSL 120
           LYP+GPN+DFKKELR LNRELQLHILEL+D+LVERPSQYARRVE+ISLIFKNLHHLLNSL
Sbjct: 61  LYPKGPNIDFKKELRSLNRELQLHILELSDVLVERPSQYARRVEDISLIFKNLHHLLNSL 120

Query: 121 RPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDG 168
           RPHQARATLIHILELQI+RR+QAVEDIKRRREEAQR L ESL TL+G
Sbjct: 121 RPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRRLKESLGTLEG 167

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g09240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED7A_ARATH	3.1e-76	83.83	Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana G...	[more]
MED7B_ARATH	9.8e-75	82.63	Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana G...	[more]
MED7_DICDI	4.0e-28	44.00	Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium ...	[more]
MED7_AEDAE	1.7e-26	39.75	Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti GN=MED7 P...	[more]
MED7_ANOGA	1.0e-23	38.51	Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles gambiae GN=ME...	[more]

BLAST of Cp4.1LG08g09240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBQ7_CUCSA	4.3e-85	95.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G791540 PE=4 SV=1	[more]
A0A061F532_THECC	1.1e-80	91.62	Mediator of RNA polymerase II transcription subunit 7 isoform 3 OS=Theobroma cac...	[more]
A0A0D2TSC4_GOSRA	1.4e-80	90.42	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G362800 PE=4 SV=1	[more]
A0A0B0PJ64_GOSAR	1.4e-80	90.42	Putative mediator of RNA polymerase II transcription subunit 7 OS=Gossypium arbo...	[more]
V4SW18_9ROSI	1.9e-80	90.42	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012936mg PE=4 SV=1	[more]

BLAST of Cp4.1LG08g09240 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G03220.1	1.7e-77	83.83	Mediator complex, subunit Med7	[more]
AT5G03500.1	5.5e-76	82.63	Mediator complex, subunit Med7	[more]

BLAST of Cp4.1LG08g09240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437536\|ref\|XP_004136548.1\|	6.1e-85	95.83	PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis ...	[more]
gi\|1009161423\|ref\|XP_015898889.1\|	9.2e-81	90.48	PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Ziziphus juju...	[more]
gi\|590637458\|ref\|XP_007029122.1\|	1.6e-80	91.62	Mediator of RNA polymerase II transcription subunit 7 isoform 3 [Theobroma cacao...	[more]
gi\|823199741\|ref\|XP_012435009.1\|	2.0e-80	90.42	PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Gossypium rai...	[more]
gi\|567874731\|ref\|XP_006429955.1\|	2.7e-80	90.42	hypothetical protein CICLE_v10012936mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Molecular Function**
Term	Definition
GO:0001104	RNA polymerase II transcription cofactor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR009244	Mediatior_Med7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g09240.1	Cp4.1LG08g09240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009244	Mediator complex, subunit Med7	PANTHER	PTHR21428	FAMILY NOT NAMED	coord: 1..165 score: 8.2
IPR009244	Mediator complex, subunit Med7	PFAM	PF05983	Med7	coord: 4..157 score: 2.8
None	No IPR available	unknown	Coil	Coil	coord: 130..164 scor
None	No IPR available	PANTHER	PTHR21428:SF11	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7	coord: 1..165 score: 8.2
None	No IPR available	unknown	SSF140718	Mediator hinge subcomplex-like	coord: 66..157 score: 5.75

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g09240	Cucsa.242380	Cucumber (Gy14) v1	cgycpeB0650
Cp4.1LG08g09240	CmaCh06G005660	Cucurbita maxima (Rimu)	cmacpeB852
Cp4.1LG08g09240	CmoCh06G005720	Cucurbita moschata (Rifu)	cmocpeB797
Cp4.1LG08g09240	Cla017575	Watermelon (97103) v1	cpewmB827
Cp4.1LG08g09240	Csa3G791540	Cucumber (Chinese Long) v2	cpecuB861
Cp4.1LG08g09240	MELO3C009592	Melon (DHL92) v3.5.1	cpemeB796
Cp4.1LG08g09240	ClCG10G017820	Watermelon (Charleston Gray)	cpewcgB765
Cp4.1LG08g09240	CSPI03G36120	Wild cucumber (PI 183967)	cpecpiB863
Cp4.1LG08g09240	Lsi03G017690	Bottle gourd (USVL1VR-Ls)	cpelsiB707
Cp4.1LG08g09240	MELO3C009592.2	Melon (DHL92) v3.6.1	cpemedB937
Cp4.1LG08g09240	CsaV3_7G005510	Cucumber (Chinese Long) v3	cpecucB1082
Cp4.1LG08g09240	CsGy3G033560	Cucumber (Gy14) v2	cgybcpeB455
Cp4.1LG08g09240	Carg16255	Silver-seed gourd	carcpeB0957

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g09240	Wax gourd	cpewgoB1088
Cp4.1LG08g09240	Cucurbita pepo (Zucchini)	cpecpeB487
Cp4.1LG08g09240	Cucurbita maxima (Rimu)	cmacpeB296
Cp4.1LG08g09240	Cucurbita moschata (Rifu)	cmocpeB259
Cp4.1LG08g09240	Silver-seed gourd	carcpeB0354
Cp4.1LG08g09240	Cucumber (Chinese Long) v3	cpecucB1057