Cp4.1LG08g09240.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAACTCGGGTGTGCCAGTTGATTCCAATTCTCATTCTGTCGATTGTTAGATTTTTCCACTAACAATGGCGACAGCTACGTATCCGCCACCACCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCCGATCGAAGGGACCTACGTCTGCTTTGGTAGCAACTACACTGTAAGATTTACTCTCGATTCCTTCTTCATCTCTCTGAATGCATCTTGAAATGTCATTTATATGTGAAGATTCGAATTTGATTTCACATTTTTGTTGAATTCTTTTAGCTGTTGGAGTCTGGCTGAACTTTTCATTTTTTAAATAGATAAGATTTTTTAAGAACGTATGCTAAGAATGGTTTTAGGGTTTTTAGTTCCGAGGTTGTTCGTTTCTGCTTCCGAAATCTTTCATAATCTCCGTTCAGTGTGGACATTTTCGAGTTAGATTCATTATTTGATTTGATAATCTCCGTTCACTGTGATTTTATTCCTTTTTCCTGATTGTTTCGTTTTGATTTTAGACCGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGGTAAGTAGATTTAGTTTAGTTACCAGTGTTCCCAAATTTGGGTCAGAATTTGTTCTCCATCAGTTGTTTTTCTATTTGATAAGAATCGCTATTATCCTCTCAAGTAAGGCAAATTTTATGCTCAAGTAATTATTCGTTTGATTTCTTAGATCTGTGGTGGTCTCTGTTTTGGTTCGGGGTAAGAATAATGCATGTATTGGTAGCCTCCAAGGGGCAGCACCATTGGCTAAGGCTCACGGTCTCTAAGTAATCCTACTCAAAGTCACATGTTTGAATCTCGGGGGTAGATTTTTAAGGAAAGCTTTGTTGTCTTCAGAGTTTAGGCCTTGGGGCTGGCGTGGATGCCAAAGGGAAGTGAGGCTTTATAATCCATCCCCAAGACATAAAGGCTGAGGAGAATCTCTGGAAACCCTACAATTGGCCTTAACTATCTTAGAGCAGTGAACTTAACCTCACCCAAATGAAATTACACACACATGAACGAGCTAACCGCTTTTGGTCCCAAATTTTTTGGGGTCGCTTTTGACACTGATATGTGTACACTCGCACATGTTCATGTATATCTCTTCCTATTGTCATTTTTAACCACAAAAACTTGGCTTTGCAATTGAGACTAGGGCTGCAGTCTTCAGGCAACTCGTATTTAAGACAAAAAATAATCTTCCATCCTTTGGGGCGTACTCTAAAAGAACTCAAACCTATTGCAAATATTTCTCCTAAGCTCTGAGCACGGAGTGTCATTGCTTTAAAGTCCTGTTAAAAGAAGAATACAAATGTTTGGGACATTCCTATTTCTATTGTCATGGAAGAAACGAATTAAATTCCTGTTCGTGAAAACATTAGAAACTGTATTTAAAGACATGAAAATGTGTAGTGGTAGTTGCTGTCATGTTCTTAATTGATTCCTGTACAGTGTAAACAAAAGAGTCTCTTTGCTGCCACTTGCTCAATGAACTTGATTTTTGATTGCTTGGAGCAACACTCTCCCCTGCAGCCCTCCCTCTCAAGTAAAGTCTTTTACCTGACATTATTATTGGTGGTTCTTCCTCAGATTTTAAGAAGGAATTGAGATTTCTCAATAGGGAGCTTCAGCTTCACATCCTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCGCAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGTGGTTTAGTTTTACACATTTAAACTGGACATATCGTATCGTCGAAATTATCTGATTGTCAGGTCTATCTTCCCTTGTAGGCTAGAGCTACACTCATTCATATACTAGAACTTCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGTATGTTGGTTCTGATCGAATATATTCATGTATGAATGTGTAATAACTTGTGCAATCAGCTACCCTTTCGTCACACGCCTTTTTTTGGATTGAATGTCGTACTTTCTCGGGTAAACATTATTAAACCCAAAACTTAGGATTTCTTGTCCCTTTATCCATAATCATTGTTTTGTTAGGATGCGTTCTTATAAAATTTTCAGCCCATAATTCATCGTTCAAGGCTTGTTTCTGTTCTGGCTGATAACTTCTGCATCATCTCACTGATTATTTGCTACCTTTTAAAACACGTTTTGGCCTAATTTTCTTGTCTAGGAGGAGAGAAGAGGCACAAAGATTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAGTCTTGTCCATGCTGAATACGTTTTGCATTCAAGATCTTTATATCCATAGTGCAGCCTCGAATGCATCGGTTCGGTCAGTTGTAATGCTTGGCTTCTACATCGACCATGCACGTAGGCTACGAATATTTGTCAATTTGTTCAAGATCTTGAAGGGGGACACCCTTTCCTGCTGTGAATACTTTAGCAGATTTGTTAATGTGTAGATTGATGGAACTACTTTTTAAACTTTAATTCACGGGTTCGGTATAGTGACTGCGAACTTACTTGAATTAGGTCGAGGTTGTACAACCGTGTCCTTGAATTCTAAGGTTATGCATAGTGTGAGTATGAGATTGAAAGAGATTAATGCTATTGCTTCTCTGGCCTCTAAAAGCATGTTTAAGCTCCAACTTTATGCAAAATATTACGTTAGTTATGGTTATCTTTT CAACTCGGGTGTGCCAGTTGATTCCAATTCTCATTCTGTCGATTGTTAGATTTTTCCACTAACAATGGCGACAGCTACGTATCCGCCACCACCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCCGATCGAAGGGACCTACGTCTGCTTTGGTAGCAACTACACTACCGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGATTTTAAGAAGGAATTGAGATTTCTCAATAGGGAGCTTCAGCTTCACATCCTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCGCAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGCTAGAGCTACACTCATTCATATACTAGAACTTCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGAGGAGAGAAGAGGCACAAAGATTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAGTCTTGTCCATGCTGAATACGTTTTGCATTCAAGATCTTTATATCCATAGTGCAGCCTCGAATGCATCGGTTCGGTCAGTTGTAATGCTTGGCTTCTACATCGACCATGCACGTAGGCTACGAATATTTGTCAATTTGTTCAAGATCTTGAAGGGGGACACCCTTTCCTGCTGTGAATACTTTAGCAGATTTGTTAATGTGTAGATTGATGGAACTACTTTTTAAACTTTAATTCACGGGTTCGGTATAGTGACTGCGAACTTACTTGAATTAGGTCGAGGTTGTACAACCGTGTCCTTGAATTCTAAGGTTATGCATAGTGTGAGTATGAGATTGAAAGAGATTAATGCTATTGCTTCTCTGGCCTCTAAAAGCATGTTTAAGCTCCAACTTTATGCAAAATATTACGTTAGTTATGGTTATCTTTT ATGGCGACAGCTACGTATCCGCCACCACCACCGTATTACAGGCTCTACAAAGATTACTCCCAGAATCCGAAATCGGCACCGGAGCCTCCTCCGCCGATCGAAGGGACCTACGTCTGCTTTGGTAGCAACTACACTACCGATGACGTGCTTCCAAGCTTGGAAGAGCAAGGAGTGCGCCAGCTTTACCCTAGAGGACCAAATGTTGATTTTAAGAAGGAATTGAGATTTCTCAATAGGGAGCTTCAGCTTCACATCCTGGAGCTCGCCGATATTCTTGTTGAGAGGCCATCGCAATACGCAAGGAGGGTAGAAGAAATATCCCTAATATTCAAAAACTTACACCACCTGCTTAATTCATTGCGTCCGCATCAGGCTAGAGCTACACTCATTCATATACTAGAACTTCAGATAGAGCGTCGGAGACAAGCTGTCGAGGATATAAAAAGGAGGAGAGAAGAGGCACAAAGATTACTCATGGAGTCCCTTGAAACTTTGGATGGACACTAG MATATYPPPPPYYRLYKDYSQNPKSAPEPPPPIEGTYVCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDFKKELRFLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH
BLAST of Cp4.1LG08g09240.1 vs. Swiss-Prot
Match: MED7A_ARATH (Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana GN=MED7A PE=1 SV=1) HSP 1 Score: 285.8 bits (730), Expect = 3.1e-76 Identity = 140/167 (83.83%), Postives = 155/167 (92.81%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. Swiss-Prot
Match: MED7B_ARATH (Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana GN=MED7B PE=1 SV=1) HSP 1 Score: 280.8 bits (717), Expect = 9.8e-75 Identity = 138/167 (82.63%), Postives = 154/167 (92.22%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. Swiss-Prot
Match: MED7_DICDI (Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum GN=med7 PE=3 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 4.0e-28 Identity = 66/150 (44.00%), Postives = 96/150 (64.00%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. Swiss-Prot
Match: MED7_AEDAE (Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti GN=MED7 PE=3 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 1.7e-26 Identity = 64/161 (39.75%), Postives = 104/161 (64.60%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. Swiss-Prot
Match: MED7_ANOGA (Mediator of RNA polymerase II transcription subunit 7 OS=Anopheles gambiae GN=MED7 PE=3 SV=2) HSP 1 Score: 111.3 bits (277), Expect = 1.0e-23 Identity = 62/161 (38.51%), Postives = 99/161 (61.49%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. TrEMBL
Match: A0A0A0LBQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G791540 PE=4 SV=1) HSP 1 Score: 322.0 bits (824), Expect = 4.3e-85 Identity = 161/168 (95.83%), Postives = 166/168 (98.81%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. TrEMBL
Match: A0A061F532_THECC (Mediator of RNA polymerase II transcription subunit 7 isoform 3 OS=Theobroma cacao GN=TCM_025030 PE=4 SV=1) HSP 1 Score: 307.4 bits (786), Expect = 1.1e-80 Identity = 153/167 (91.62%), Postives = 161/167 (96.41%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. TrEMBL
Match: A0A0D2TSC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G362800 PE=4 SV=1) HSP 1 Score: 307.0 bits (785), Expect = 1.4e-80 Identity = 151/167 (90.42%), Postives = 162/167 (97.01%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. TrEMBL
Match: A0A0B0PJ64_GOSAR (Putative mediator of RNA polymerase II transcription subunit 7 OS=Gossypium arboreum GN=F383_07728 PE=4 SV=1) HSP 1 Score: 307.0 bits (785), Expect = 1.4e-80 Identity = 151/167 (90.42%), Postives = 162/167 (97.01%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. TrEMBL
Match: V4SW18_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012936mg PE=4 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 1.9e-80 Identity = 151/167 (90.42%), Postives = 160/167 (95.81%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. TAIR10
Match: AT5G03220.1 (AT5G03220.1 Mediator complex, subunit Med7) HSP 1 Score: 285.8 bits (730), Expect = 1.7e-77 Identity = 140/167 (83.83%), Postives = 155/167 (92.81%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. TAIR10
Match: AT5G03500.1 (AT5G03500.1 Mediator complex, subunit Med7) HSP 1 Score: 280.8 bits (717), Expect = 5.5e-76 Identity = 138/167 (82.63%), Postives = 154/167 (92.22%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. NCBI nr
Match: gi|449437536|ref|XP_004136548.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis sativus]) HSP 1 Score: 322.0 bits (824), Expect = 6.1e-85 Identity = 161/168 (95.83%), Postives = 166/168 (98.81%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. NCBI nr
Match: gi|1009161423|ref|XP_015898889.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Ziziphus jujuba]) HSP 1 Score: 308.1 bits (788), Expect = 9.2e-81 Identity = 152/168 (90.48%), Postives = 161/168 (95.83%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. NCBI nr
Match: gi|590637458|ref|XP_007029122.1| (Mediator of RNA polymerase II transcription subunit 7 isoform 3 [Theobroma cacao]) HSP 1 Score: 307.4 bits (786), Expect = 1.6e-80 Identity = 153/167 (91.62%), Postives = 161/167 (96.41%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. NCBI nr
Match: gi|823199741|ref|XP_012435009.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Gossypium raimondii]) HSP 1 Score: 307.0 bits (785), Expect = 2.0e-80 Identity = 151/167 (90.42%), Postives = 162/167 (97.01%), Query Frame = 1
BLAST of Cp4.1LG08g09240.1 vs. NCBI nr
Match: gi|567874731|ref|XP_006429955.1| (hypothetical protein CICLE_v10012936mg [Citrus clementina]) HSP 1 Score: 306.6 bits (784), Expect = 2.7e-80 Identity = 151/167 (90.42%), Postives = 160/167 (95.81%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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