CU125727 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU125727
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Mediator of RNA polymerase II transcription subunit 7
Location	Chr3 : 30644639 .. 30645674 (+)
Sequence length	264

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGGAGACACAATCTACATTAGTTTACATCTTTTATAATTTTCCTTCGGAACGCATCGGTTCTTGTTAGATTTCTTTTCCGATCAAGACTAAACCATGGCGACAGCTACCTATCCACCACCACCTCCATTTTACAAGCTCTACAAAGATTACCTGCAGGATCCGAAATCGGCACCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACCACGGATGACGTGCTTCCAAGTTTGGAAG

Library


Library category	ESTs
fruit (8DPP) library	1

Homology

[Close]

BLAST of CU125727 vs. Swiss-Prot
Match: MED7A_ARATH (Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana GN=MED7A PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-13
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 3


Query: 102 MATATYXXXXXFYKLYKDYLQDPKSAXXXXXXIEGTYMCFGSNYTTDDVLPSLE 161
           MATATY     +Y+LYKDY ++P SA      IEGTY+CFG NYTT+DVLPSLE
Sbjct: 1   MATATYPPPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTEDVLPSLE 54

Query: 162  221
           
Sbjct: 61   54

Query: 222  264
           
Sbjct: 121  54

[Close]

BLAST of CU125727 vs. Swiss-Prot
Match: MED7B_ARATH (Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana GN=MED7B PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-11
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = 3


Query: 102 MATATYXXXXXFYKLYKDYLQDPKSAXXXXXXIEGTYMCFGSNYTTDDVLPSLE 161
           MATATY     +Y+LYKD+ ++  SA      IEGTY+CFG NYTT+DVLPSLE
Sbjct: 1   MATATYPPPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTEDVLPSLE 54

Query: 162  221
           
Sbjct: 61   54

Query: 222  264
           
Sbjct: 121  54

[Close]

BLAST of CU125727 vs. TrEMBL
Match: A0A0A0LBQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G791540 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-15
Identity = 43/54 (79.63%), Postives = 43/54 (79.63%), Query Frame = 3


Query: 102 MATATYXXXXXFYKLYKDYLQDPKSAXXXXXXIEGTYMCFGSNYTTDDVLPSLE 161
           MATATY     FYKLYKDYLQDPKSA      IEGTYMCFGSNYTTDDVLPSLE
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLE 54

Query: 162  221
           
Sbjct: 61   54

Query: 222  264
           
Sbjct: 121  54

[Close]

BLAST of CU125727 vs. TrEMBL
Match: W9QYU7_9ROSA (Putative mediator of RNA polymerase II transcription subunit 7 OS=Morus notabilis GN=L484_014057 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.6e-14
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = 3


Query: 102 MATATYXXXXXFYKLYKDYLQDPKSAXXXXXXIEGTYMCFGSNYTTDDVLPSLE 161
           MATATY     FY+LYKDYLQDPKSA      IEGTY+CFG+NYTTDDVLPS+E
Sbjct: 1   MATATYPPPPPFYRLYKDYLQDPKSAPAPPPPIEGTYVCFGANYTTDDVLPSME 54

Query: 162  221
           
Sbjct: 61   54

Query: 222  264
           
Sbjct: 121  54

[Close]

BLAST of CU125727 vs. TrEMBL
Match: M5W1M1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021222mg PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-13
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 3


Query: 102 MATATYXXXXXFYKLYKDYLQDPKSAXXXXXXIEGTYMCFGSNYTTDDVLPSLE 161
           MATATY     +YKLYKDYLQDPKSA      IEGTY+C+G NYTTDD+LPSLE
Sbjct: 1   MATATYPPPPPYYKLYKDYLQDPKSAPEPPPPIEGTYICYGGNYTTDDILPSLE 54

Query: 162  221
           
Sbjct: 61   54

Query: 222  264
           
Sbjct: 121  54

[Close]

BLAST of CU125727 vs. TrEMBL
Match: A0A0B0PJ64_GOSAR (Putative mediator of RNA polymerase II transcription subunit 7 OS=Gossypium arboreum GN=F383_07728 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-13
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 3


Query: 102 MATATYXXXXXFYKLYKDYLQDPKSAXXXXXXIEGTYMCFGSNYTTDDVLPSLE 161
           MATATY     FY+LYKDYLQ+PKSA      IEGTY+CFG NYTTDDVLPSLE
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLE 54

Query: 162  221
           
Sbjct: 61   54

Query: 222  264
           
Sbjct: 121  54

[Close]

BLAST of CU125727 vs. TrEMBL
Match: A0A0D2TSC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G362800 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-13
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 3


Query: 102 MATATYXXXXXFYKLYKDYLQDPKSAXXXXXXIEGTYMCFGSNYTTDDVLPSLE 161
           MATATY     FY+LYKDYLQ+PKSA      IEGTY+CFG NYTTDDVLPSLE
Sbjct: 1   MATATYPPPPPFYRLYKDYLQNPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLE 54

Query: 162  221
           
Sbjct: 61   54

Query: 222  264
           
Sbjct: 121  54

[Close]

BLAST of CU125727 vs. NCBI nr
Match: gi|449437536|ref|XP_004136548.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 7.0e-16
Identity = 43/54 (79.63%), Postives = 43/54 (79.63%), Query Frame = 3


Query: 102 MATATYXXXXXFYKLYKDYLQDPKSAXXXXXXIEGTYMCFGSNYTTDDVLPSLE 161
           MATATY     FYKLYKDYLQDPKSA      IEGTYMCFGSNYTTDDVLPSLE
Sbjct: 1   MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLE 54

Query: 162  221
           
Sbjct: 61   54

Query: 222  264
           
Sbjct: 121  54

[Close]

BLAST of CU125727 vs. NCBI nr
Match: gi|703065823|ref|XP_010087552.1| (Putative mediator of RNA polymerase II transcription subunit 7 [Morus notabilis])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = 3


Query: 102 MATATYXXXXXFYKLYKDYLQDPKSAXXXXXXIEGTYMCFGSNYTTDDVLPSLE 161
           MATATY     FY+LYKDYLQDPKSA      IEGTY+CFG+NYTTDDVLPS+E
Sbjct: 1   MATATYPPPPPFYRLYKDYLQDPKSAPAPPPPIEGTYVCFGANYTTDDVLPSME 54

Query: 162  221
           
Sbjct: 61   54

Query: 222  264
           
Sbjct: 121  54

[Close]

BLAST of CU125727 vs. NCBI nr
Match: gi|470135123|ref|XP_004303373.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = 3


Query: 102 MATATYXXXXXFYKLYKDYLQDPKSAXXXXXXIEGTYMCFGSNYTTDDVLPSLE 161
           MATATY     +YKLYKDYLQDPKSA      IEGTY+C+G+NYTTDDVLPSLE
Sbjct: 1   MATATYPPPPPYYKLYKDYLQDPKSAPEPPPPIEGTYICYGANYTTDDVLPSLE 54

Query: 162  221
           
Sbjct: 61   54

Query: 222  264
           
Sbjct: 121  54

[Close]

BLAST of CU125727 vs. NCBI nr
Match: gi|1009161423|ref|XP_015898889.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Ziziphus jujuba])

HSP 1 Score: 86.3 bits (212), Expect = 2.9e-14
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 3


Query: 102 MATATYXXXXXFYKLYKDYLQDPKSAXXXXXXIEGTYMCFGSNYTTDDVLPSLE 161
           MATATY     +Y+LYKDYLQDPKSA      IEGTY+CFG NYTTDDVLPSLE
Sbjct: 1   MATATYPPPPPYYRLYKDYLQDPKSAPEPPPPIEGTYVCFGGNYTTDDVLPSLE 54

Query: 162  221
           
Sbjct: 61   54

Query: 222  264
           
Sbjct: 121  54

[Close]

BLAST of CU125727 vs. NCBI nr
Match: gi|645271926|ref|XP_008241147.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Prunus mume])

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-14
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 3


Query: 102 MATATYXXXXXFYKLYKDYLQDPKSAXXXXXXIEGTYMCFGSNYTTDDVLPSLE 161
           MATATY     +YKLYKDYLQDPKSA      IEGTY+C+G NYTTDD+LPSLE
Sbjct: 1   MATATYPPPPPYYKLYKDYLQDPKSAPEPPPPIEGTYICYGGNYTTDDILPSLE 54

Query: 162  221
           
Sbjct: 61   54

Query: 222  264
           
Sbjct: 121  54

The following BLAST results are available for this feature:

BLAST of CU125727 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED7A_ARATH	3.2e-13	62.96	Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana G...	[more]
MED7B_ARATH	1.0e-11	59.26	Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana G...	[more]

BLAST of CU125727 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBQ7_CUCSA	1.9e-15	79.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G791540 PE=4 SV=1	[more]
W9QYU7_9ROSA	4.6e-14	72.22	Putative mediator of RNA polymerase II transcription subunit 7 OS=Morus notabili...	[more]
M5W1M1_PRUPE	1.0e-13	70.37	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021222mg PE=4 SV=1	[more]
A0A0B0PJ64_GOSAR	1.3e-13	72.22	Putative mediator of RNA polymerase II transcription subunit 7 OS=Gossypium arbo...	[more]
A0A0D2TSC4_GOSRA	1.3e-13	72.22	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G362800 PE=4 SV=1	[more]

BLAST of CU125727 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437536\|ref\|XP_004136548.1\|	7.0e-16	79.63	PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis ...	[more]
gi\|703065823\|ref\|XP_010087552.1\|	1.7e-14	72.22	Putative mediator of RNA polymerase II transcription subunit 7 [Morus notabilis]	[more]
gi\|470135123\|ref\|XP_004303373.1\|	2.2e-14	72.22	PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Fragaria...	[more]
gi\|1009161423\|ref\|XP_015898889.1\|	2.9e-14	72.22	PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Ziziphus juju...	[more]
gi\|645271926\|ref\|XP_008241147.1\|	3.8e-14	70.37	PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Prunus m...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR009244	Mediatior_Med7

Vocabulary: **Molecular Function**
Term	Definition
GO:0001104	RNA polymerase II transcription cofactor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G791540	Csa3G791540	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LH3FD	FKNP3UI02LH3FD	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009244	Mediator complex, subunit Med7	PFAM	PF05983	Med7	coord: 4..54 score: 9.