Csa3G791540.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTAGTTTACATCTTTTATAATTTTCCTTCGGAACGCATCGGTTCTTGTTAGATTTCTTTTCCGATCAAGACTAAACCATGGCGACAGCTACCTATCCACCACCACCTCCATTTTACAAGCTCTACAAAGATTACCTGCAGGATCCGAAATCGGCACCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACCGTGAGATTTACTCTACATTCCTTTTGAGTATCGTGATTCCGTTTTCATTTCACACATTAGTTTAGTTCTTTTACCAGTTTGCGGTTTCGTTGTACGTTTCATCTTTAACTCCATAGAGTTGAAGGGATGTATGCATGTTCAAAATGTATTTAGGGTTTTCAGCTCTGAAGTTGTTGGATTCCGCTTCCAAAATCCTTCATATTTTTCTCATTTTAGTGCGGTTTTCTTGTATTTGAATCTCGAGAGTCGGTTTTGATTTCACACCCTAGTCGAATTCTTTTAGCAGTTTGAGTTTAACTGTATTTTTCATCTTTAATTCCATAGATTTGAAGGGGGACGAATGTATGTTCAGAATGTATTTAGGGTTTTTCAGTTCTGAAGTTGTTGAATTCTGCTTTAAAAATGCTTCATATTATTCTCATTTTAATGCGGATTTCTTGCATGTTTTGATTGAATTGATAATTTAAACATTGTCACGATAATTTGAATATCGAGATTCGGTTTTGATTTCAGACATTAGTTGAGTTCTTTTAGCAGTTTCAGTTTAATTGTATTTTTAATCTTTAATTCCATAGAGTTGGAGGGGACGTATGTATCTGCAAAGTGTATTTGGGGTTTTTCACTTCTGAAGTTGTTGGGTTACGCTTCCAAAATCCTTCATATTATTATCATTTTACTGCGGAATCCTTGTATATTTTGATTGGATTGATTATTGAAACAGCTTCACGATAATTGCTCTGTTTTTTGATTCTTTATCTTGATTATTCTGTTGTGATTTTAGACGGATGACGTGCTTCCAAGTTTGGAAGAGCAAGGAGTGCGCCAACTTTACCCTAGAGGGCCAAATGTTGGTAAGTATGTTTAGTTATCAGTGCTTCCAAATTGTTCTCCATCAGTGGTTTTCTATTCAATAAGAATTGTTATTTGTCTCTCAATTAAGTTAGTGTTATGCTCTAGCATTTATCTTCTGATTCCTAAGGTTCGTGGTCTCTGTTTTTGTTGGTTGATAAGAAAAGTGGATGGACTCATAGTCCCCAAGGGATGGTCACATTGTTTAAAAGGCCTGTTGTCTTTGGGAAAAACCTACTCATAGTTTGTGTTTTTGAAGCTGGAAGCCATGGGTTTTTAAAAGAATAGAATGCTTGTATTGGAGGAGGAGGGATGCTGAAGTGAAGGAACAATTTGCAATCCATCCCCATGCAAAGATTTAAAGGTTGAGGCAAATTGTAAAGAAAATGTGCAATTAGCACATGCAAAAATCAAAGTACAGCTAAAAAAAAAGATTTGATGAAGATTACCAGCTAGATTAGTAGACTTAGCCATATCTAAATTAAATTACAGAGACACACACGAGTCCCAAGACTCCTACATCATACATGTGCACGCTTACACCCACTCATACACATCCTTTTATCTACATTTTTAATCACGAAAGCTTTGCTTTACAATTGAACCTAGAACTGCAGGCAGGGAATAGTTAATCAGTTGGGGTTTTTTTTTTTTAATAAAAAAAGGTCCGATAATTTTCCCCAGTCTCTGAGCACCAGTGTGATGGTTTTAAGGCCTTGACAATCGGGTTGGGATTTTCAGATTTCTATTTCTGTGTGAGTATTTGAGTGGTTCTATTCGTGATTGTGAAGACATGTGGTACTGTATTTATAGACATGAAATGTGTTAGTGGTATTGGTTGTAATATTCTTTATAGATCTAAAATAAAGACCCTCTTTACCTACGACACTTGCTCAATGAACTTGAATGGAGTGCTTGGAGTAACTCTCTCCTCTACAGGCCTGCTCCTTAAACTAACTCACTTAGCTGACATTATTACCTGTGGTTCTTTTTCAGATTATAAGAAGGAATTGAGATCTCTGAATAGAGAATTGCAGCTTCACATTCTGGAGCTTGCTGATATTCTTGTTGAGAGGCCATCCCAATATGCAAGGAGGGTGGAAGAAATATCCCTAATATTCAAAAACTTACACCATCTGCTTAATTCTTTGCGACCACATCAGGTGGACACTTTAAAACATTTTAAATTAGTGTATCCATATTGGTGAAATCATTTCATGTTTATTGTTTATTTTTCCCTGTAGGCTAGAGCAACATTGATTCATATACTAGAACTTCAGATTGAGCGTCGTAGACAAGCTGTCGAGGATATAAAGAGGTATGCTAATAAGGGTTCTGATGGAATATATCAGAAATAAGAATGTGGAAGAATTGATACAATCACTAACCCTTTCACCACACCTCTTTTGATACATTATAAAATATCTCGGGTAAACTTAATTGCACATACAAGTTGGGACTTTTGGCCCCTTTATCAATATCATTGTTTCTTATCATATTCTTGGTGGTATGAGTCTAGTTGGTGGAGATATGTAGTATTGTAAAATTTTCAGCTAACGATTCAATGTTCTAATTACAAAGTCTTGATTTCCATTTCGAGGCACCTCTTCATTGATTATTTTGCTACTTTGCCTAGGAGGAGAGAAGAAGCACAAAGACTGCTCATGGAGTCACTTGAAACTTTGGATGGGCACTAGTACTACCTCTTTCATCAGTGTTGAATTCATAAAGTACAGATCTTGTCCATGCTGAATGTTTCGATCTCCTCGTATTCTACTGCATCTACTGATTTCATCGGTTCAGCTCAGTCAGTTCTAATGCATACACTGGTGCATCGATGACATGTCTAGGTAATTCTTAGGTATAACATCTTTGTCAATCTGTGCAAGATCCAGAAGTGACCTCTCCCCCGTTGTGATTACTTGAGCAGATTGTAATTAATTGTTTGAACTACATTGTAAGCTTTAGTTCACGGGTTCGGCATAGTGACTAAGAAACGCAGTTGAAAAGATCTGTTCTATAGATTGTACTGAGTGACAGCCTATAACCGTGAGATTGGAAGAAATTAATGCTATTGCGTCCTTGGCTTCCGTAATATTTCTCTCACTATGCATTATTGTTTGAAATACAACGATCCGCCAGGCTGTGGGATGCAGCAGTAACGATGGAGACAATGGTAACTTATCAATGAATAATTTGTTTGGTCAATTATT ATGGCGACAGCTACCTATCCACCACCACCTCCATTTTACAAGCTCTACAAAGATTACCTGCAGGATCCGAAATCGGCACCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACCACGGATGACGTGCTTCCAAGTTTGGAAGAGCAAGGAGTGCGCCAACTTTACCCTAGAGGGCCAAATGTTGATTATAAGAAGGAATTGAGATCTCTGAATAGAGAATTGCAGCTTCACATTCTGGAGCTTGCTGATATTCTTGTTGAGAGGCCATCCCAATATGCAAGGAGGGTGGAAGAAATATCCCTAATATTCAAAAACTTACACCATCTGCTTAATTCTTTGCGACCACATCAGGCTAGAGCAACATTGATTCATATACTAGAACTTCAGATTGAGCGTCGTAGACAAGCTGTCGAGGATATAAAGAGGAGGAGAGAAGAAGCACAAAGACTGCTCATGGAGTCACTTGAAACTTTGGATGGGCACTAG ATGGCGACAGCTACCTATCCACCACCACCTCCATTTTACAAGCTCTACAAAGATTACCTGCAGGATCCGAAATCGGCACCGGAGCCTCCTCCGCCCATCGAAGGCACCTATATGTGCTTTGGTAGCAATTACACCACGGATGACGTGCTTCCAAGTTTGGAAGAGCAAGGAGTGCGCCAACTTTACCCTAGAGGGCCAAATGTTGATTATAAGAAGGAATTGAGATCTCTGAATAGAGAATTGCAGCTTCACATTCTGGAGCTTGCTGATATTCTTGTTGAGAGGCCATCCCAATATGCAAGGAGGGTGGAAGAAATATCCCTAATATTCAAAAACTTACACCATCTGCTTAATTCTTTGCGACCACATCAGGCTAGAGCAACATTGATTCATATACTAGAACTTCAGATTGAGCGTCGTAGACAAGCTGTCGAGGATATAAAGAGGAGGAGAGAAGAAGCACAAAGACTGCTCATGGAGTCACTTGAAACTTTGGATGGGCACTAG MATATYPPPPPFYKLYKDYLQDPKSAPEPPPPIEGTYMCFGSNYTTDDVLPSLEEQGVRQLYPRGPNVDYKKELRSLNRELQLHILELADILVERPSQYARRVEEISLIFKNLHHLLNSLRPHQARATLIHILELQIERRRQAVEDIKRRREEAQRLLMESLETLDGH*
BLAST of Csa3G791540.1 vs. Swiss-Prot
Match: MED7A_ARATH (Mediator of RNA polymerase II transcription subunit 7a OS=Arabidopsis thaliana GN=MED7A PE=1 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 1.6e-77 Identity = 137/167 (82.04%), Postives = 153/167 (91.62%), Query Frame = 1
BLAST of Csa3G791540.1 vs. Swiss-Prot
Match: MED7B_ARATH (Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana GN=MED7B PE=1 SV=1) HSP 1 Score: 285.0 bits (728), Expect = 5.2e-76 Identity = 135/167 (80.84%), Postives = 152/167 (91.02%), Query Frame = 1
BLAST of Csa3G791540.1 vs. Swiss-Prot
Match: MED7_DICDI (Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum GN=med7 PE=3 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 1.3e-29 Identity = 63/141 (44.68%), Postives = 92/141 (65.25%), Query Frame = 1
HSP 2 Score: 35.0 bits (79), Expect = 9.4e-01 Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 1
BLAST of Csa3G791540.1 vs. Swiss-Prot
Match: MED7_AEDAE (Mediator of RNA polymerase II transcription subunit 7 OS=Aedes aegypti GN=MED7 PE=3 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 4.8e-29 Identity = 64/161 (39.75%), Postives = 101/161 (62.73%), Query Frame = 1
BLAST of Csa3G791540.1 vs. Swiss-Prot
Match: MED7_HUMAN (Mediator of RNA polymerase II transcription subunit 7 OS=Homo sapiens GN=MED7 PE=1 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.0e-26 Identity = 63/166 (37.95%), Postives = 97/166 (58.43%), Query Frame = 1
BLAST of Csa3G791540.1 vs. TrEMBL
Match: A0A0A0LBQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G791540 PE=4 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 3.1e-91 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1
BLAST of Csa3G791540.1 vs. TrEMBL
Match: A0A061F532_THECC (Mediator of RNA polymerase II transcription subunit 7 isoform 3 OS=Theobroma cacao GN=TCM_025030 PE=4 SV=1) HSP 1 Score: 316.2 bits (809), Expect = 2.4e-83 Identity = 152/167 (91.02%), Postives = 163/167 (97.60%), Query Frame = 1
BLAST of Csa3G791540.1 vs. TrEMBL
Match: A0A0B0PJ64_GOSAR (Putative mediator of RNA polymerase II transcription subunit 7 OS=Gossypium arboreum GN=F383_07728 PE=4 SV=1) HSP 1 Score: 315.8 bits (808), Expect = 3.1e-83 Identity = 150/167 (89.82%), Postives = 164/167 (98.20%), Query Frame = 1
BLAST of Csa3G791540.1 vs. TrEMBL
Match: A0A0D2TSC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G362800 PE=4 SV=1) HSP 1 Score: 315.8 bits (808), Expect = 3.1e-83 Identity = 150/167 (89.82%), Postives = 164/167 (98.20%), Query Frame = 1
BLAST of Csa3G791540.1 vs. TrEMBL
Match: M1ALK1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401009863 PE=4 SV=1) HSP 1 Score: 314.7 bits (805), Expect = 6.9e-83 Identity = 150/167 (89.82%), Postives = 164/167 (98.20%), Query Frame = 1
BLAST of Csa3G791540.1 vs. TAIR10
Match: AT5G03220.1 (AT5G03220.1 Mediator complex, subunit Med7) HSP 1 Score: 290.0 bits (741), Expect = 9.2e-79 Identity = 137/167 (82.04%), Postives = 153/167 (91.62%), Query Frame = 1
BLAST of Csa3G791540.1 vs. TAIR10
Match: AT5G03500.1 (AT5G03500.1 Mediator complex, subunit Med7) HSP 1 Score: 285.0 bits (728), Expect = 3.0e-77 Identity = 135/167 (80.84%), Postives = 152/167 (91.02%), Query Frame = 1
BLAST of Csa3G791540.1 vs. NCBI nr
Match: gi|449437536|ref|XP_004136548.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Cucumis sativus]) HSP 1 Score: 342.4 bits (877), Expect = 4.4e-91 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1
BLAST of Csa3G791540.1 vs. NCBI nr
Match: gi|1009161423|ref|XP_015898889.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Ziziphus jujuba]) HSP 1 Score: 320.9 bits (821), Expect = 1.4e-84 Identity = 153/168 (91.07%), Postives = 163/168 (97.02%), Query Frame = 1
BLAST of Csa3G791540.1 vs. NCBI nr
Match: gi|470135123|ref|XP_004303373.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Fragaria vesca subsp. vesca]) HSP 1 Score: 318.5 bits (815), Expect = 6.8e-84 Identity = 153/166 (92.17%), Postives = 164/166 (98.80%), Query Frame = 1
BLAST of Csa3G791540.1 vs. NCBI nr
Match: gi|645271926|ref|XP_008241147.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 7a-like [Prunus mume]) HSP 1 Score: 316.2 bits (809), Expect = 3.4e-83 Identity = 150/166 (90.36%), Postives = 163/166 (98.19%), Query Frame = 1
BLAST of Csa3G791540.1 vs. NCBI nr
Match: gi|590637458|ref|XP_007029122.1| (Mediator of RNA polymerase II transcription subunit 7 isoform 3 [Theobroma cacao]) HSP 1 Score: 316.2 bits (809), Expect = 3.4e-83 Identity = 152/167 (91.02%), Postives = 163/167 (97.60%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
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