Csa2G009400 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G009400
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr2 : 1637015 .. 1637667 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAATGGCGGTTCTTCTTCTTTTCCTTATGATCATGCTTCAAGCTCAAGGTATGTACCAGCTTTATTGTTAATTAGTTTTGATCTCAAATATATATCTTTTCAACTTGGGTTTTGTTTTGTTACCTTTAGAAACATTATTACTCTATCTTGATTTTTCTTTGTTTTCAAAATCAAGTTAACGTTTTGAAAACGTTTTTGGGTTTTTTTCATGATTATATTTTTTACGATTCTTCTTTATTTCGTTTTAAATACTTAAAGAAAGTTCAAATATTCTGTTATAAGAAAAGAAAAACTTAAGGAAACATAAATTTCAATAACAAAAGACTACAATTTTAACATACATTAATAGTGTTTTTATGCACTTACAAAGTTATTCGATGTCCTTTGTCAAGCAGAAAAAATGAATTTTCTTTTTGAACTTTTTGAAGGGATTCGGTTGTTGGAGAAAGGGATGAGCAAAGAGTACAAGAAAAGTGGAGGTTTTTTGGTAAATAAAAATGGTGGAGATTCATTGATGACAATGAAGAAGAGAGCCCCAATTAGGGCTTTAAGAAAACCATATTCACATTGGCTTCCAGGCATTCAAGAAGATTATCATGGACCAAGAAGCCATAAATCTAGGCACCATTGACTCTCTCTCTTTTTTTTTTT

mRNA sequence

ATGGCGGTTCTTCTTCTTTTCCTTATGATCATGCTTCAAGCTCAAGGGATTCGGTTGTTGGAGAAAGGGATGAGCAAAGAGTACAAGAAAAGTGGAGGTTTTTTGGTAAATAAAAATGGTGGAGATTCATTGATGACAATGAAGAAGAGAGCCCCAATTAGGGCTTTAAGAAAACCATATTCACATTGGCTTCCAGGCATTCAAGAAGATTATCATGGACCAAGAAGCCATAAATCTAGGCACCATTGA

Coding sequence (CDS)

ATGGCGGTTCTTCTTCTTTTCCTTATGATCATGCTTCAAGCTCAAGGGATTCGGTTGTTGGAGAAAGGGATGAGCAAAGAGTACAAGAAAAGTGGAGGTTTTTTGGTAAATAAAAATGGTGGAGATTCATTGATGACAATGAAGAAGAGAGCCCCAATTAGGGCTTTAAGAAAACCATATTCACATTGGCTTCCAGGCATTCAAGAAGATTATCATGGACCAAGAAGCCATAAATCTAGGCACCATTGA

Protein sequence

MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPYSHWLPGIQEDYHGPRSHKSRHH*

Homology

[Close]

BLAST of Csa2G009400 vs. TrEMBL
Match: A0A0A0LJ48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009400 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 6.0e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60
          MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60

Query: 61 SHWLPGIQEDYHGPRSHKSRHH 83
          SHWLPGIQEDYHGPRSHKSRHH
Sbjct: 61 SHWLPGIQEDYHGPRSHKSRHH 82

[Close]

BLAST of Csa2G009400 vs. TrEMBL
Match: A0A0D2U6Z9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G057200 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 1  MAVLLLFLMIMLQAQGIRLLE--KGMSKEYKKSGGFLVNKNG--GDSLMTMKKRAPIRAL 60
          +++L+LF++ +   QGIRL +  K    +  + G  + N NG  GD L+  +        
Sbjct: 8  VSLLVLFIIYLSSVQGIRLEKSFKSAGHDPIQEGALMKNSNGAMGDILLCKQGHCTGTKK 67

Query: 61 RKPYSHWLPGIQEDYHGPRSHKSRHH 83
          RK + HWLP I EDY+GPR H+ RHH
Sbjct: 68 RKSH-HWLPSIHEDYYGPRKHRPRHH 92

[Close]

BLAST of Csa2G009400 vs. NCBI nr
Match: gi|700205633|gb|KGN60752.1| (hypothetical protein Csa_2G009400 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 8.6e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60
          MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60

Query: 61 SHWLPGIQEDYHGPRSHKSRHH 83
          SHWLPGIQEDYHGPRSHKSRHH
Sbjct: 61 SHWLPGIQEDYHGPRSHKSRHH 82

[Close]

BLAST of Csa2G009400 vs. NCBI nr
Match: gi|763797659|gb|KJB64614.1| (hypothetical protein B456_010G057200 [Gossypium raimondii])

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-06
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 1  MAVLLLFLMIMLQAQGIRLLE--KGMSKEYKKSGGFLVNKNG--GDSLMTMKKRAPIRAL 60
          +++L+LF++ +   QGIRL +  K    +  + G  + N NG  GD L+  +        
Sbjct: 8  VSLLVLFIIYLSSVQGIRLEKSFKSAGHDPIQEGALMKNSNGAMGDILLCKQGHCTGTKK 67

Query: 61 RKPYSHWLPGIQEDYHGPRSHKSRHH 83
          RK + HWLP I EDY+GPR H+ RHH
Sbjct: 68 RKSH-HWLPSIHEDYYGPRKHRPRHH 92

The following BLAST results are available for this feature:

BLAST of Csa2G009400 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ48_CUCSA	6.0e-40	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009400 PE=4 SV=1	[more]
A0A0D2U6Z9_GOSRA	1.1e-06	38.37	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G057200 PE=4 SV=1	[more]

BLAST of Csa2G009400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205633\|gb\|KGN60752.1\|	8.6e-40	100.00	hypothetical protein Csa_2G009400 [Cucumis sativus]	[more]
gi\|763797659\|gb\|KJB64614.1\|	1.6e-06	38.37	hypothetical protein B456_010G057200 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G009400.1	Csa2G009400.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G009400	ClCG02G017200	Watermelon (Charleston Gray)	cuwcgB122
Csa2G009400	MELO3C031336.2	Melon (DHL92) v3.6.1	cumedB132
Csa2G009400	Cla97C02G042890	Watermelon (97103) v2	cuwmbB118
Csa2G009400	CSPI02G02410	Wild cucumber (PI 183967)	cpicuB065
Csa2G009400	CmaCh12G011590	Cucurbita maxima (Rimu)	cmacuB173
Csa2G009400	CmaCh05G012410	Cucurbita maxima (Rimu)	cmacuB791
Csa2G009400	CmoCh05G012690	Cucurbita moschata (Rifu)	cmocuB783
Csa2G009400	CmoCh12G011810	Cucurbita moschata (Rifu)	cmocuB157
Csa2G009400	Cp4.1LG07g10930	Cucurbita pepo (Zucchini)	cpecuB812
Csa2G009400	Cp4.1LG11g10140	Cucurbita pepo (Zucchini)	cpecuB103
Csa2G009400	CsGy2G002490	Cucumber (Gy14) v2	cgybcuB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G009400	Watermelon (97103) v2	cuwmbB151
Csa2G009400	Wax gourd	cuwgoB138
Csa2G009400	Wax gourd	cuwgoB213
Csa2G009400	Cucumber (Chinese Long) v2	cucuB011
Csa2G009400	Cucumber (Gy14) v1	cgycuB184
Csa2G009400	Cucumber (Gy14) v1	cgycuB492
Csa2G009400	Cucurbita maxima (Rimu)	cmacuB073
Csa2G009400	Cucurbita maxima (Rimu)	cmacuB115
Csa2G009400	Cucurbita moschata (Rifu)	cmocuB062
Csa2G009400	Cucurbita moschata (Rifu)	cmocuB104
Csa2G009400	Melon (DHL92) v3.5.1	cumeB109
Csa2G009400	Melon (DHL92) v3.5.1	cumeB139
Csa2G009400	Watermelon (Charleston Gray)	cuwcgB155
Csa2G009400	Watermelon (97103) v1	cuwmB147
Csa2G009400	Watermelon (97103) v1	cuwmB175
Csa2G009400	Cucurbita pepo (Zucchini)	cpecuB667
Csa2G009400	Bottle gourd (USVL1VR-Ls)	culsiB098
Csa2G009400	Bottle gourd (USVL1VR-Ls)	culsiB133
Csa2G009400	Cucumber (Gy14) v2	cgybcuB020
Csa2G009400	Melon (DHL92) v3.6.1	cumedB103
Csa2G009400	Silver-seed gourd	carcuB0141
Csa2G009400	Silver-seed gourd	carcuB0282
Csa2G009400	Silver-seed gourd	carcuB1087