CsGy2G002490 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G002490
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr2 : 1657953 .. 1658845 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTGCTCCATTTTTTTTCTCTCTCTTTATATATATATATACCAATCGATATAAATACTAGCCTTCCCTAGAAGTTCATTGGATTAAAAAAGAATATATATATATACCATCAAATCAAAAACTCAAAAAAGATACTCAAAGTTAGAATCTTGTCTTCATTCTCGTCGCCATTGTTGCTCTAAACTAAAAGCTTAGCTTTCTTGTTCATACAGTACTATATTCCAAATGAAGCTCCCTCCAATGGCGGTTCTTCTTCTTTTCCTTATGATCATGCTTCAAGCTCAAGGTATGTACCAGCTTTATTGTTAATTAGTTTTGATCTCAAATATATATCTTTTCAACTTGGGTTTTGTTTTGTTACCTTTAGAAACATTATTACTCTATCTTGATTTTTCTTTGTTTTCAAAATCAAGTTAACGTTTTGAAAACGTTTTTGGGTTTTTTTCATGATTATATTTTTTACGATTCTTCTTTATTTCGTTTTAAATACTTAAAGAAAGTTCAAATATTCTGTTATAAGAAAAGAAAAACTTAAGGAAACATAAATTTCAATAACAAAAGACTACAATTTTAACATACATTAATAGTGTTTTTATGCACTTACAAAGTTATTCGATGTCCTTTGTCAAGCAGAAAAAATGAATTTTCTTTTTGAACTTTTTGAAGGGATTCGGTTGTTGGAGAAAGGGATGAGCAAAGAGTACAAGAAAAGTGGAGGTTTTTTGGTAAATAAAAATGGTGGAGATTCATTGATGACAATGAAGAAGAGAGCCCCAATTAGGGCTTTAAGAAAACCATATTCACATTGGCTTCCAGGCATTCAAGAAGATTATCATGGACCAAGAAGCCATAAATCTAGGCACCATTGACTCTCTCTCTTTTTTTTTTTTTTT

mRNA sequence

AGTTGCTCCATTTTTTTTCTCTCTCTTTATATATATATATACCAATCGATATAAATACTAGCCTTCCCTAGAAGTTCATTGGATTAAAAAAGAATATATATATATACCATCAAATCAAAAACTCAAAAAAGATACTCAAAGTTAGAATCTTGTCTTCATTCTCGTCGCCATTGTTGCTCTAAACTAAAAGCTTAGCTTTCTTGTTCATACAGTACTATATTCCAAATGAAGCTCCCTCCAATGGCGGTTCTTCTTCTTTTCCTTATGATCATGCTTCAAGCTCAAGGGATTCGGTTGTTGGAGAAAGGGATGAGCAAAGAGTACAAGAAAAGTGGAGGTTTTTTGGTAAATAAAAATGGTGGAGATTCATTGATGACAATGAAGAAGAGAGCCCCAATTAGGGCTTTAAGAAAACCATATTCACATTGGCTTCCAGGCATTCAAGAAGATTATCATGGACCAAGAAGCCATAAATCTAGGCACCATTGACTCTCTCTCTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGAAGCTCCCTCCAATGGCGGTTCTTCTTCTTTTCCTTATGATCATGCTTCAAGCTCAAGGGATTCGGTTGTTGGAGAAAGGGATGAGCAAAGAGTACAAGAAAAGTGGAGGTTTTTTGGTAAATAAAAATGGTGGAGATTCATTGATGACAATGAAGAAGAGAGCCCCAATTAGGGCTTTAAGAAAACCATATTCACATTGGCTTCCAGGCATTCAAGAAGATTATCATGGACCAAGAAGCCATAAATCTAGGCACCATTGA

Protein sequence

MKLPPMAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPYSHWLPGIQEDYHGPRSHKSRHH

Homology

[Close]

BLAST of CsGy2G002490 vs. NCBI nr
Match: KGN60752.1 (hypothetical protein Csa_2G009400 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 1.6e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 6  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 65
          MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60

Query: 66 SHWLPGIQEDYHGPRSHKSRHH 88
          SHWLPGIQEDYHGPRSHKSRHH
Sbjct: 61 SHWLPGIQEDYHGPRSHKSRHH 82

[Close]

BLAST of CsGy2G002490 vs. NCBI nr
Match: KJB64614.1 (hypothetical protein B456_010G057200 [Gossypium raimondii])

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 6  MAVLLLFLMIMLQAQGIRLLE--KGMSKEYKKSGGFLVNKNG--GDSLMTMKKRAPIRAL 65
          +++L+LF++ +   QGIRL +  K    +  + G  + N NG  GD L+  +        
Sbjct: 8  VSLLVLFIIYLSSVQGIRLEKSFKSAGHDPIQEGALMKNSNGAMGDILLCKQGHCTGTKK 67

Query: 66 RKPYSHWLPGIQEDYHGPRSHKSRHH 88
          RK + HWLP I EDY+GPR H+ RHH
Sbjct: 68 RKSH-HWLPSIHEDYYGPRKHRPRHH 92

[Close]

BLAST of CsGy2G002490 vs. NCBI nr
Match: PPD70307.1 (hypothetical protein GOBAR_DD32812 [Gossypium barbadense])

HSP 1 Score: 52.8 bits (125), Expect = 7.0e-04
Identity = 33/88 (37.50%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 9  LLLFLMIMLQAQGIRLLEKGMSKEYK-KSGGFLVNKNG--GDSLMTMK------KRAPIR 68
          LL+FL+++   +GIRL +   S   K + G  + N NG  GD +++ +      KR    
Sbjct: 10 LLVFLIVLSSIEGIRLEKISKSMHPKLQEGSLMKNGNGVRGDDILSKEGHCRDTKRKKAH 69

Query: 69 ALRKPYSHWLPGIQEDYHGPRSHKSRHH 88
           + K   HW+P I EDY GPR H+ RHH
Sbjct: 70 KVFKRSHHWIPSIHEDYRGPRRHRPRHH 97

[Close]

BLAST of CsGy2G002490 vs. TrEMBL
Match: tr|A0A0A0LJ48|A0A0A0LJ48_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.1e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 6  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 65
          MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60

Query: 66 SHWLPGIQEDYHGPRSHKSRHH 88
          SHWLPGIQEDYHGPRSHKSRHH
Sbjct: 61 SHWLPGIQEDYHGPRSHKSRHH 82

[Close]

BLAST of CsGy2G002490 vs. TrEMBL
Match: tr|A0A0D2U6Z9|A0A0D2U6Z9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G057200 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.7e-04
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 6  MAVLLLFLMIMLQAQGIRLLE--KGMSKEYKKSGGFLVNKNG--GDSLMTMKKRAPIRAL 65
          +++L+LF++ +   QGIRL +  K    +  + G  + N NG  GD L+  +        
Sbjct: 8  VSLLVLFIIYLSSVQGIRLEKSFKSAGHDPIQEGALMKNSNGAMGDILLCKQGHCTGTKK 67

Query: 66 RKPYSHWLPGIQEDYHGPRSHKSRHH 88
          RK + HWLP I EDY+GPR H+ RHH
Sbjct: 68 RKSH-HWLPSIHEDYYGPRKHRPRHH 92

[Close]

BLAST of CsGy2G002490 vs. TrEMBL
Match: tr|A0A2P5Q6X0|A0A2P5Q6X0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD32812 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.6e-04
Identity = 33/88 (37.50%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 9  LLLFLMIMLQAQGIRLLEKGMSKEYK-KSGGFLVNKNG--GDSLMTMK------KRAPIR 68
          LL+FL+++   +GIRL +   S   K + G  + N NG  GD +++ +      KR    
Sbjct: 10 LLVFLIVLSSIEGIRLEKISKSMHPKLQEGSLMKNGNGVRGDDILSKEGHCRDTKRKKAH 69

Query: 69 ALRKPYSHWLPGIQEDYHGPRSHKSRHH 88
           + K   HW+P I EDY GPR H+ RHH
Sbjct: 70 KVFKRSHHWIPSIHEDYRGPRRHRPRHH 97

The following BLAST results are available for this feature:

BLAST of CsGy2G002490 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60752.1	1.6e-37	100.00	hypothetical protein Csa_2G009400 [Cucumis sativus]	[more]
KJB64614.1	4.1e-04	38.37	hypothetical protein B456_010G057200 [Gossypium raimondii]	[more]
PPD70307.1	7.0e-04	37.50	hypothetical protein GOBAR_DD32812 [Gossypium barbadense]	[more]

BLAST of CsGy2G002490 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy2G002490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G002490 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJ48\|A0A0A0LJ48_CUCSA	1.1e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1	[more]
tr\|A0A0D2U6Z9\|A0A0D2U6Z9_GOSRA	2.7e-04	38.37	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G057200 PE=4 ...	[more]
tr\|A0A2P5Q6X0\|A0A2P5Q6X0_GOSBA	4.6e-04	37.50	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD32812 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G002490.1	CsGy2G002490.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G002490	Csa2G009400	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G002490	ClCG02G017200	Watermelon (Charleston Gray)	cgybwcgB119
CsGy2G002490	CSPI02G02410	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G002490	CmaCh12G011590	Cucurbita maxima (Rimu)	cgybcmaB178
CsGy2G002490	CmaCh05G012410	Cucurbita maxima (Rimu)	cgybcmaB257
CsGy2G002490	CmoCh05G012690	Cucurbita moschata (Rifu)	cgybcmoB243
CsGy2G002490	CmoCh12G011810	Cucurbita moschata (Rifu)	cgybcmoB170
CsGy2G002490	Cp4.1LG07g10930	Cucurbita pepo (Zucchini)	cgybcpeB262
CsGy2G002490	Cp4.1LG11g10140	Cucurbita pepo (Zucchini)	cgybcpeB168
CsGy2G002490	MELO3C031336.2	Melon (DHL92) v3.6.1	cgybmedB118
CsGy2G002490	Cla97C02G042890	Watermelon (97103) v2	cgybwmbB114

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G002490	Watermelon (97103) v2	cgybwmbB145
CsGy2G002490	Wax gourd	cgybwgoB133
CsGy2G002490	Wax gourd	cgybwgoB203
CsGy2G002490	Cucumber (Gy14) v2	cgybcgybB013
CsGy2G002490	Cucurbita maxima (Rimu)	cgybcmaB152
CsGy2G002490	Cucurbita maxima (Rimu)	cgybcmaB160
CsGy2G002490	Cucurbita moschata (Rifu)	cgybcmoB144
CsGy2G002490	Cucurbita moschata (Rifu)	cgybcmoB152
CsGy2G002490	Cucurbita pepo (Zucchini)	cgybcpeB208
CsGy2G002490	Cucurbita pepo (Zucchini)	cgybcpeB238
CsGy2G002490	Cucumber (Chinese Long) v2	cgybcuB054
CsGy2G002490	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G002490	Bottle gourd (USVL1VR-Ls)	cgyblsiB122
CsGy2G002490	Melon (DHL92) v3.5.1	cgybmeB094
CsGy2G002490	Melon (DHL92) v3.5.1	cgybmeB120
CsGy2G002490	Melon (DHL92) v3.6.1	cgybmedB091
CsGy2G002490	Watermelon (Charleston Gray)	cgybwcgB145
CsGy2G002490	Watermelon (97103) v1	cgybwmB140
CsGy2G002490	Watermelon (97103) v1	cgybwmB166
CsGy2G002490	Wild cucumber (PI 183967)	cgybcpiB054
CsGy2G002490	Silver-seed gourd	carcgybB0139
CsGy2G002490	Silver-seed gourd	carcgybB0269
CsGy2G002490	Silver-seed gourd	carcgybB1053
CsGy2G002490	Cucumber (Chinese Long) v3	cgybcucB061
CsGy2G002490	Cucumber (Chinese Long) v3	cgybcucB064