CmaCh12G011590 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G011590
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr12 : 9145428 .. 9145802 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAATGGCGGTTCTTCTTCTTTTCCTCATCATTTCCGAAGCTGAAGGTACCATTCAATTCCTGAGCTGATTTTCTGAAATGGGTTTTGTTTTGTTTTTGCAAAGGATTTGTTTGGTGAATAAAAATTGAATCTTTTTGGGTTTCTTTTGTTGAAGGGATTCGGTTGCTTGATAAAAGGATGAGCAAAGAGGATAAGAAAAATGGGGGAGATTTGTTGGTGACGATGAAATGGAGAGCTCCAAATAAGGCCTTGAGAAAACCCTATTCTCATTGGCTACCAGGCATTCAAGAAGATTATCATGGTCCAAGAAGCCATAAATCTAGGCACCATTAGGGCTTTTTTAGGGTTTTTCGAGAGGTAAATAGAAACCGAA

mRNA sequence

ATCAATGGCGGTTCTTCTTCTTTTCCTCATCATTTCCGAAGCTGAAGGGATTCGGTTGCTTGATAAAAGGATGAGCAAAGAGGATAAGAAAAATGGGGGAGATTTGTTGGTGACGATGAAATGGAGAGCTCCAAATAAGGCCTTGAGAAAACCCTATTCTCATTGGCTACCAGGCATTCAAGAAGATTATCATGGTCCAAGAAGCCATAAATCTAGGCACCATTAGGGCTTTTTTAGGGTTTTTCGAGAGGTAAATAGAAACCGAA

Coding sequence (CDS)

ATGGCGGTTCTTCTTCTTTTCCTCATCATTTCCGAAGCTGAAGGGATTCGGTTGCTTGATAAAAGGATGAGCAAAGAGGATAAGAAAAATGGGGGAGATTTGTTGGTGACGATGAAATGGAGAGCTCCAAATAAGGCCTTGAGAAAACCCTATTCTCATTGGCTACCAGGCATTCAAGAAGATTATCATGGTCCAAGAAGCCATAAATCTAGGCACCATTAG

Protein sequence

MAVLLLFLIISEAEGIRLLDKRMSKEDKKNGGDLLVTMKWRAPNKALRKPYSHWLPGIQEDYHGPRSHKSRHH
Homology
[Close]
BLAST of CmaCh12G011590 vs. TrEMBL
Match: A0A0A0LJ48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009400 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.9e-22
Identity = 61/82 (74.39%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 1  MAVLLLFLIIS-EAEGIRLLDKRMSKEDKK--------NGGDLLVTMKWRAPNKALRKPY 60
          MAVLLLFL+I  +A+GIRLL+K MSKE KK        NGGD L+TMK RAP +ALRKPY
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60

Query: 61 SHWLPGIQEDYHGPRSHKSRHH 74
          SHWLPGIQEDYHGPRSHKSRHH
Sbjct: 61 SHWLPGIQEDYHGPRSHKSRHH 82

[Close]
BLAST of CmaCh12G011590 vs. NCBI nr
Match: gi|700205633|gb|KGN60752.1| (hypothetical protein Csa_2G009400 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 4.2e-22
Identity = 61/82 (74.39%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 1  MAVLLLFLIIS-EAEGIRLLDKRMSKEDKK--------NGGDLLVTMKWRAPNKALRKPY 60
          MAVLLLFL+I  +A+GIRLL+K MSKE KK        NGGD L+TMK RAP +ALRKPY
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60

Query: 61 SHWLPGIQEDYHGPRSHKSRHH 74
          SHWLPGIQEDYHGPRSHKSRHH
Sbjct: 61 SHWLPGIQEDYHGPRSHKSRHH 82

The following BLAST results are available for this feature:
BLAST of CmaCh12G011590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh12G011590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ48_CUCSA2.9e-2274.39Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009400 PE=4 SV=1[more]
BLAST of CmaCh12G011590 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh12G011590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205633|gb|KGN60752.1|4.2e-2274.39hypothetical protein Csa_2G009400 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G011590.1CmaCh12G011590.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G011590Csa2G009400Cucumber (Chinese Long) v2cmacuB173
CmaCh12G011590ClCG02G017200Watermelon (Charleston Gray)cmawcgB156
CmaCh12G011590CSPI02G02410Wild cucumber (PI 183967)cmacpiB174
CmaCh12G011590CmoCh12G011810Cucurbita moschata (Rifu)cmacmoB177
CmaCh12G011590CmoCh05G012690Cucurbita moschata (Rifu)cmacmoB190
CmaCh12G011590Cp4.1LG07g10930Cucurbita pepo (Zucchini)cmacpeB206
CmaCh12G011590Cp4.1LG11g10140Cucurbita pepo (Zucchini)cmacpeB171
CmaCh12G011590MELO3C031336.2Melon (DHL92) v3.6.1cmamedB187
CmaCh12G011590Cla97C02G042890Watermelon (97103) v2cmawmbB175
CmaCh12G011590CsGy2G002490Cucumber (Gy14) v2cgybcmaB178
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh12G011590CmaCh05G012410Cucurbita maxima (Rimu)cmacmaB190
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G011590Bottle gourd (USVL1VR-Ls)cmalsiB159
CmaCh12G011590Bottle gourd (USVL1VR-Ls)cmalsiB183
CmaCh12G011590Melon (DHL92) v3.6.1cmamedB169
CmaCh12G011590Silver-seed gourdcarcmaB0355
CmaCh12G011590Silver-seed gourdcarcmaB1074
CmaCh12G011590Silver-seed gourdcarcmaB1483
CmaCh12G011590Cucumber (Chinese Long) v3cmacucB0187
CmaCh12G011590Cucumber (Chinese Long) v3cmacucB0202
CmaCh12G011590Watermelon (97103) v2cmawmbB189
CmaCh12G011590Wax gourdcmawgoB0177
CmaCh12G011590Cucurbita maxima (Rimu)cmacmaB088
CmaCh12G011590Cucurbita maxima (Rimu)cmacmaB124
CmaCh12G011590Cucumber (Gy14) v1cgycmaB0364
CmaCh12G011590Cucurbita moschata (Rifu)cmacmoB170
CmaCh12G011590Cucurbita moschata (Rifu)cmacmoB174
CmaCh12G011590Wild cucumber (PI 183967)cmacpiB162
CmaCh12G011590Cucumber (Chinese Long) v2cmacuB162
CmaCh12G011590Melon (DHL92) v3.5.1cmameB155
CmaCh12G011590Melon (DHL92) v3.5.1cmameB172
CmaCh12G011590Watermelon (97103) v1cmawmB170