Cp4.1LG11g10140 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g10140
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG11 : 8617454 .. 8618316 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAGACACACACACACACGAATCAACAAATGCTTGTTCAAAAAGTTCAGATATTTTATCAAATCAAAGCCTGAAAGTTCAAATCTTTTTCCTCCATTCTCATCGCCATTGTTGCACCAAACCTCAAGCTTTCTTCATACAGTCCAAATGAAGCTCTCTTCAATGGCGGTTCTTCTTCTTTTCCTCATCGTCTCCCAAGCTCAAGGTACCAATTAATTCCTCGACTAATTTTATCATCTGGGTCTTCTTTTAAAACACGTTTTACGTTCTAAAATGGTTAAAATCACTTTTGTCATGTTCAAAATCATTACGAAACGAGCAAATGAGTGTTCTTAAGTGAAAAAGACGATATTTTTATGTTGTAAGACGATTAAAAAAGGAATTTTTTTTAAAGGGATTAGGTTGTTGGAGAAAGGGATGAGCAAAGAGTATAAGAAAAGTGGTGGAGATTTGTTGATGAAGATGAAGAAAGCCCCAAGCAAGGCCTCAAGAAAACCACATTCTCAATGGCTACCAGGCATGCAAGAGGATTATCATGGACCAAGAAGCCATAAATTGAGACACCATTAGTCCTTTCCCACCACCTTTCTTCTTAGGGTTCGAGAGGGCGACTCGAGCTGTAAATAGAAACCGAGCATTGTTAATTCTGTTGTCATCAAAGAAGGTAGGAACACTAACTAGTTTAAGAGACCTTATTTGAGGAGCTGACGGTTTTATAAGATTAAGAAGGATCGTAACAGCCACGTTGCGTAGCTTTATTAGATTCAGCTTTAACTCGTCTCATCAGTTGAATTAGGGATCGGTGTAGATTAGTTTGAACGGGTTGGAAAATTGAGGAGAAATTCTTTTTTTTTCTTTTTTTT

mRNA sequence

TATAGACACACACACACACGAATCAACAAATGCTTGTTCAAAAAGTTCAGATATTTTATCAAATCAAAGCCTGAAAGTTCAAATCTTTTTCCTCCATTCTCATCGCCATTGTTGCACCAAACCTCAAGCTTTCTTCATACAGTCCAAATGAAGCTCTCTTCAATGGCGGTTCTTCTTCTTTTCCTCATCGTCTCCCAAGCTCAAGGGATTAGGTTGTTGGAGAAAGGGATGAGCAAAGAGTATAAGAAAAGTGGTGGAGATTTGTTGATGAAGATGAAGAAAGCCCCAAGCAAGGCCTCAAGAAAACCACATTCTCAATGGCTACCAGGCATGCAAGAGGATTATCATGGACCAAGAAGCCATAAATTGAGACACCATTAGTCCTTTCCCACCACCTTTCTTCTTAGGGTTCGAGAGGGCGACTCGAGCTGTAAATAGAAACCGAGCATTGTTAATTCTGTTGTCATCAAAGAAGGTAGGAACACTAACTAGTTTAAGAGACCTTATTTGAGGAGCTGACGGTTTTATAAGATTAAGAAGGATCGTAACAGCCACGTTGCGTAGCTTTATTAGATTCAGCTTTAACTCGTCTCATCAGTTGAATTAGGGATCGGTGTAGATTAGTTTGAACGGGTTGGAAAATTGAGGAGAAATTCTTTTTTTTTCTTTTTTTT

Coding sequence (CDS)

ATGAAGCTCTCTTCAATGGCGGTTCTTCTTCTTTTCCTCATCGTCTCCCAAGCTCAAGGGATTAGGTTGTTGGAGAAAGGGATGAGCAAAGAGTATAAGAAAAGTGGTGGAGATTTGTTGATGAAGATGAAGAAAGCCCCAAGCAAGGCCTCAAGAAAACCACATTCTCAATGGCTACCAGGCATGCAAGAGGATTATCATGGACCAAGAAGCCATAAATTGAGACACCATTAG

Protein sequence

MKLSSMAVLLLFLIVSQAQGIRLLEKGMSKEYKKSGGDLLMKMKKAPSKASRKPHSQWLPGMQEDYHGPRSHKLRHH
Homology
[Close]
BLAST of Cp4.1LG11g10140 vs. TrEMBL
Match: A0A0A0LJ48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009400 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-19
Identity = 60/82 (73.17%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 6  MAVLLLFLIVS-QAQGIRLLEKGMSKEYKKSGG--------DLLMKMKK-APSKASRKPH 65
          MAVLLLFL++  QAQGIRLLEKGMSKEYKKSGG        D LM MKK AP +A RKP+
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60

Query: 66 SQWLPGMQEDYHGPRSHKLRHH 78
          S WLPG+QEDYHGPRSHK RHH
Sbjct: 61 SHWLPGIQEDYHGPRSHKSRHH 82

[Close]
BLAST of Cp4.1LG11g10140 vs. NCBI nr
Match: gi|700205633|gb|KGN60752.1| (hypothetical protein Csa_2G009400 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-19
Identity = 60/82 (73.17%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 6  MAVLLLFLIVS-QAQGIRLLEKGMSKEYKKSGG--------DLLMKMKK-APSKASRKPH 65
          MAVLLLFL++  QAQGIRLLEKGMSKEYKKSGG        D LM MKK AP +A RKP+
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60

Query: 66 SQWLPGMQEDYHGPRSHKLRHH 78
          S WLPG+QEDYHGPRSHK RHH
Sbjct: 61 SHWLPGIQEDYHGPRSHKSRHH 82

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g10140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g10140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ48_CUCSA2.4e-1973.17Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009400 PE=4 SV=1[more]
BLAST of Cp4.1LG11g10140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG11g10140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205633|gb|KGN60752.1|3.5e-1973.17hypothetical protein Csa_2G009400 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g10140.1Cp4.1LG11g10140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g10140CmaCh05G012410Cucurbita maxima (Rimu)cmacpeB767
Cp4.1LG11g10140CmaCh12G011590Cucurbita maxima (Rimu)cmacpeB171
Cp4.1LG11g10140CmoCh12G011810Cucurbita moschata (Rifu)cmocpeB147
Cp4.1LG11g10140CmoCh05G012690Cucurbita moschata (Rifu)cmocpeB721
Cp4.1LG11g10140Csa2G009400Cucumber (Chinese Long) v2cpecuB103
Cp4.1LG11g10140ClCG02G017200Watermelon (Charleston Gray)cpewcgB104
Cp4.1LG11g10140CSPI02G02410Wild cucumber (PI 183967)cpecpiB100
Cp4.1LG11g10140MELO3C031336.2Melon (DHL92) v3.6.1cpemedB123
Cp4.1LG11g10140CsGy2G002490Cucumber (Gy14) v2cgybcpeB168
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG11g10140Cp4.1LG07g10930Cucurbita pepo (Zucchini)cpecpeB147
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g10140Wild cucumber (PI 183967)cpecpiB089
Cp4.1LG11g10140Cucumber (Chinese Long) v2cpecuB093
Cp4.1LG11g10140Bottle gourd (USVL1VR-Ls)cpelsiB074
Cp4.1LG11g10140Watermelon (Charleston Gray)cpewcgB117
Cp4.1LG11g10140Watermelon (97103) v1cpewmB113
Cp4.1LG11g10140Watermelon (97103) v1cpewmB125
Cp4.1LG11g10140Melon (DHL92) v3.5.1cpemeB087
Cp4.1LG11g10140Melon (DHL92) v3.5.1cpemeB099
Cp4.1LG11g10140Cucumber (Gy14) v2cgybcpeB029
Cp4.1LG11g10140Melon (DHL92) v3.6.1cpemedB110
Cp4.1LG11g10140Silver-seed gourdcarcpeB0181
Cp4.1LG11g10140Silver-seed gourdcarcpeB0357
Cp4.1LG11g10140Silver-seed gourdcarcpeB1494
Cp4.1LG11g10140Cucumber (Chinese Long) v3cpecucB0101
Cp4.1LG11g10140Cucumber (Chinese Long) v3cpecucB0114
Cp4.1LG11g10140Wax gourdcpewgoB0114
Cp4.1LG11g10140Cucurbita pepo (Zucchini)cpecpeB113
Cp4.1LG11g10140Cucurbita pepo (Zucchini)cpecpeB130
Cp4.1LG11g10140Cucumber (Gy14) v1cgycpeB0351
Cp4.1LG11g10140Cucurbita maxima (Rimu)cmacpeB074
Cp4.1LG11g10140Cucurbita moschata (Rifu)cmocpeB088