CmoCh12G011810 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G011810
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr12 : 10682302 .. 10682632 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTCTTCTTCTTTTCCTCATCATTTCCGAAGCTGAAGGTACCATTCAATTCCTGAGCTGATTTTCTGAAATGGGTTTTGTTTTGTTTTTGCAAAGGATTTGATTGGTGAATAAAAATTTGATCTTTTTGGGTTTCTTTTGTTGAAGGGATTAGGTTGCTTGATAAGAGGATGAGCAAAGAGGATAAGAGAAATGGGGGAGATTTGTTGGGGACGATGAAATGGAGAGCTCCAAATAAGGCATGGAGAAAACCCTATTCTCATTGGCTACCTGGCATTCAAGAGGATTATCATGGTCCAAGAAGCCATAAATCTAGGCACCATTAG

mRNA sequence

ATGGCGGTTCTTCTTCTTTTCCTCATCATTTCCGAAGCTGAAGGGATTAGGTTGCTTGATAAGAGGATGAGCAAAGAGGATAAGAGAAATGGGGGAGATTTGTTGGGGACGATGAAATGGAGAGCTCCAAATAAGGCATGGAGAAAACCCTATTCTCATTGGCTACCTGGCATTCAAGAGGATTATCATGGTCCAAGAAGCCATAAATCTAGGCACCATTAG

Coding sequence (CDS)

ATGGCGGTTCTTCTTCTTTTCCTCATCATTTCCGAAGCTGAAGGGATTAGGTTGCTTGATAAGAGGATGAGCAAAGAGGATAAGAGAAATGGGGGAGATTTGTTGGGGACGATGAAATGGAGAGCTCCAAATAAGGCATGGAGAAAACCCTATTCTCATTGGCTACCTGGCATTCAAGAGGATTATCATGGTCCAAGAAGCCATAAATCTAGGCACCATTAG

Homology

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BLAST of CmoCh12G011810 vs. TrEMBL
Match: A0A0A0LJ48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009400 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.2e-20
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 1  MAVLLLFLIIS-EAEGIRLLDKRMSKEDKR--------NGGDLLGTMKWRAPNKAWRKPY 60
          MAVLLLFL+I  +A+GIRLL+K MSKE K+        NGGD L TMK RAP +A RKPY
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60

Query: 61 SHWLPGIQEDYHGPRSHKSRHH 74
          SHWLPGIQEDYHGPRSHKSRHH
Sbjct: 61 SHWLPGIQEDYHGPRSHKSRHH 82

[Close]

BLAST of CmoCh12G011810 vs. NCBI nr
Match: gi|700205633|gb|KGN60752.1| (hypothetical protein Csa_2G009400 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-20
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 1  MAVLLLFLIIS-EAEGIRLLDKRMSKEDKR--------NGGDLLGTMKWRAPNKAWRKPY 60
          MAVLLLFL+I  +A+GIRLL+K MSKE K+        NGGD L TMK RAP +A RKPY
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60

Query: 61 SHWLPGIQEDYHGPRSHKSRHH 74
          SHWLPGIQEDYHGPRSHKSRHH
Sbjct: 61 SHWLPGIQEDYHGPRSHKSRHH 82

The following BLAST results are available for this feature:

BLAST of CmoCh12G011810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh12G011810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ48_CUCSA	1.2e-20	71.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009400 PE=4 SV=1	[more]

BLAST of CmoCh12G011810 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh12G011810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205633\|gb\|KGN60752.1\|	1.8e-20	71.95	hypothetical protein Csa_2G009400 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G011810.1	CmoCh12G011810.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G011810	CmaCh12G011590	Cucurbita maxima (Rimu)	cmacmoB177
CmoCh12G011810	CmaCh05G012410	Cucurbita maxima (Rimu)	cmacmoB763
CmoCh12G011810	Csa2G009400	Cucumber (Chinese Long) v2	cmocuB157
CmoCh12G011810	ClCG02G017200	Watermelon (Charleston Gray)	cmowcgB144
CmoCh12G011810	CSPI02G02410	Wild cucumber (PI 183967)	cmocpiB159
CmoCh12G011810	Cp4.1LG07g10930	Cucurbita pepo (Zucchini)	cmocpeB178
CmoCh12G011810	Cp4.1LG11g10140	Cucurbita pepo (Zucchini)	cmocpeB147
CmoCh12G011810	MELO3C031336.2	Melon (DHL92) v3.6.1	cmomedB177
CmoCh12G011810	Cla97C02G042890	Watermelon (97103) v2	cmowmbB161
CmoCh12G011810	CsGy2G002490	Cucumber (Gy14) v2	cgybcmoB170

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh12G011810	CmoCh05G012690	Cucurbita moschata (Rifu)	cmocmoB148

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G011810	Watermelon (97103) v2	cmowmbB173
CmoCh12G011810	Wax gourd	cmowgoB0171
CmoCh12G011810	Cucurbita moschata (Rifu)	cmocmoB084
CmoCh12G011810	Cucumber (Gy14) v1	cgycmoB0359
CmoCh12G011810	Cucumber (Gy14) v1	cgycmoB0959
CmoCh12G011810	Cucurbita maxima (Rimu)	cmacmoB123
CmoCh12G011810	Wild cucumber (PI 183967)	cmocpiB146
CmoCh12G011810	Cucumber (Chinese Long) v2	cmocuB147
CmoCh12G011810	Melon (DHL92) v3.5.1	cmomeB145
CmoCh12G011810	Melon (DHL92) v3.5.1	cmomeB161
CmoCh12G011810	Watermelon (Charleston Gray)	cmowcgB156
CmoCh12G011810	Watermelon (97103) v1	cmowmB156
CmoCh12G011810	Watermelon (97103) v1	cmowmB169
CmoCh12G011810	Cucurbita pepo (Zucchini)	cmocpeB169
CmoCh12G011810	Bottle gourd (USVL1VR-Ls)	cmolsiB148
CmoCh12G011810	Bottle gourd (USVL1VR-Ls)	cmolsiB173
CmoCh12G011810	Melon (DHL92) v3.6.1	cmomedB160
CmoCh12G011810	Silver-seed gourd	carcmoB0356
CmoCh12G011810	Silver-seed gourd	carcmoB1441
CmoCh12G011810	Cucumber (Chinese Long) v3	cmocucB0171
CmoCh12G011810	Cucumber (Chinese Long) v3	cmocucB0185