Cp4.1LG07g10930 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g10930
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG07 : 10041177 .. 10041891 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGTTCAAGCTGTTCTTGATTTTCATCTTCATCCGCCATTGTTGCACCAGGCGAAGCTTTCTTCAGTTCTTCAAATGAAGCCTTCATCAATGGCGGTTCTTCTTCTTTTCCTCATCATTTCCGAAGCTGAAGGTACCATTCAATTCCTGAGATGATTTTCTGAAATGGGTTTTGTTTTGTTTTTGCAAAGGATTTGATTGGTGAATAAAAATTGAATCTTTTTGGGTTTCTTTTGATGAAGGGATTAGGTTGCTTGATAAAAGGATGAGCAAAGAGGATAAGAGAAATGGGGGAGATTTGTTGGGGACGATGAAATGGAGAGCTCCAAATAAGGCATGGAGAAAACCCTATTCTCATTGGCTACCAGGCATTCAAGAAGATTATCATGGTCCAAGAAGCCATAAATCTAGGCACCATTAGGGTTTTTTTCTCTTTTTTTTAGGGTTTTTCAAGACGTAAATAGAAACCGAACATCGTTGAGATGATGTTATTCGTTTAGTAGGATTGACTGTAACCGATTGATTTAGTTAGAACAAATTATTTGAAGAGCTGATGATTTGAATGCGTTGATTGTACGAGAAAAACCAGAATAGTAGAGGTGTTCATACGGCAGAGAAACTGATCAACCTCAAACTACCCAACTCAAACCATAAAAGACCGGAAAATTCAGGTTGGCTAGTGGGTTAACATTTTTTGGCTGGGTTAACCTAACCC

mRNA sequence

TGGGTTCAAGCTGTTCTTGATTTTCATCTTCATCCGCCATTGTTGCACCAGGCGAAGCTTTCTTCAGTTCTTCAAATGAAGCCTTCATCAATGGCGGTTCTTCTTCTTTTCCTCATCATTTCCGAAGCTGAAGGGATTAGGTTGCTTGATAAAAGGATGAGCAAAGAGGATAAGAGAAATGGGGGAGATTTGTTGGGGACGATGAAATGGAGAGCTCCAAATAAGGCATGGAGAAAACCCTATTCTCATTGGCTACCAGGCATTCAAGAAGATTATCATGGTCCAAGAAGCCATAAATCTAGGCACCATTAGGGTTTTTTTCTCTTTTTTTTAGGGTTTTTCAAGACGTAAATAGAAACCGAACATCGTTGAGATGATGTTATTCGTTTAGTAGGATTGACTGTAACCGATTGATTTAGTTAGAACAAATTATTTGAAGAGCTGATGATTTGAATGCGTTGATTGTACGAGAAAAACCAGAATAGTAGAGGTGTTCATACGGCAGAGAAACTGATCAACCTCAAACTACCCAACTCAAACCATAAAAGACCGGAAAATTCAGGTTGGCTAGTGGGTTAACATTTTTTGGCTGGGTTAACCTAACCC

Coding sequence (CDS)

ATGAAGCCTTCATCAATGGCGGTTCTTCTTCTTTTCCTCATCATTTCCGAAGCTGAAGGGATTAGGTTGCTTGATAAAAGGATGAGCAAAGAGGATAAGAGAAATGGGGGAGATTTGTTGGGGACGATGAAATGGAGAGCTCCAAATAAGGCATGGAGAAAACCCTATTCTCATTGGCTACCAGGCATTCAAGAAGATTATCATGGTCCAAGAAGCCATAAATCTAGGCACCATTAG

Protein sequence

MKPSSMAVLLLFLIISEAEGIRLLDKRMSKEDKRNGGDLLGTMKWRAPNKAWRKPYSHWLPGIQEDYHGPRSHKSRHH
Homology
[Close]
BLAST of Cp4.1LG07g10930 vs. TrEMBL
Match: A0A0A0LJ48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009400 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-20
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 6  MAVLLLFLIIS-EAEGIRLLDKRMSKEDKR--------NGGDLLGTMKWRAPNKAWRKPY 65
          MAVLLLFL+I  +A+GIRLL+K MSKE K+        NGGD L TMK RAP +A RKPY
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60

Query: 66 SHWLPGIQEDYHGPRSHKSRHH 79
          SHWLPGIQEDYHGPRSHKSRHH
Sbjct: 61 SHWLPGIQEDYHGPRSHKSRHH 82

[Close]
BLAST of Cp4.1LG07g10930 vs. NCBI nr
Match: gi|700205633|gb|KGN60752.1| (hypothetical protein Csa_2G009400 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-20
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 6  MAVLLLFLIIS-EAEGIRLLDKRMSKEDKR--------NGGDLLGTMKWRAPNKAWRKPY 65
          MAVLLLFL+I  +A+GIRLL+K MSKE K+        NGGD L TMK RAP +A RKPY
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60

Query: 66 SHWLPGIQEDYHGPRSHKSRHH 79
          SHWLPGIQEDYHGPRSHKSRHH
Sbjct: 61 SHWLPGIQEDYHGPRSHKSRHH 82

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g10930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g10930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ48_CUCSA1.0e-2071.95Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009400 PE=4 SV=1[more]
BLAST of Cp4.1LG07g10930 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g10930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205633|gb|KGN60752.1|1.4e-2071.95hypothetical protein Csa_2G009400 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g10930.1Cp4.1LG07g10930.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g10930CmaCh05G012410Cucurbita maxima (Rimu)cmacpeB798
Cp4.1LG07g10930CmaCh12G011590Cucurbita maxima (Rimu)cmacpeB206
Cp4.1LG07g10930CmoCh12G011810Cucurbita moschata (Rifu)cmocpeB178
Cp4.1LG07g10930CmoCh05G012690Cucurbita moschata (Rifu)cmocpeB751
Cp4.1LG07g10930Csa2G009400Cucumber (Chinese Long) v2cpecuB812
Cp4.1LG07g10930ClCG02G017200Watermelon (Charleston Gray)cpewcgB736
Cp4.1LG07g10930CSPI02G02410Wild cucumber (PI 183967)cpecpiB813
Cp4.1LG07g10930MELO3C031336.2Melon (DHL92) v3.6.1cpemedB914
Cp4.1LG07g10930CsGy2G002490Cucumber (Gy14) v2cgybcpeB262
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG07g10930Cp4.1LG11g10140Cucurbita pepo (Zucchini)cpecpeB147
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g10930Cucumber (Chinese Long) v3cpecucB1003
Cp4.1LG07g10930Cucumber (Chinese Long) v3cpecucB1006
Cp4.1LG07g10930Wax gourdcpewgoB1017
Cp4.1LG07g10930Cucumber (Gy14) v1cgycpeB0355
Cp4.1LG07g10930Bottle gourd (USVL1VR-Ls)cpelsiB655
Cp4.1LG07g10930Watermelon (97103) v1cpewmB809
Cp4.1LG07g10930Melon (DHL92) v3.5.1cpemeB778
Cp4.1LG07g10930Cucumber (Gy14) v2cgybcpeB148
Cp4.1LG07g10930Melon (DHL92) v3.6.1cpemedB887
Cp4.1LG07g10930Silver-seed gourdcarcpeB0362
Cp4.1LG07g10930Silver-seed gourdcarcpeB1497