Csa1G629750 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G629750
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Putative Rickettsia surface antigen family protein
Location	Chr1 : 25038131 .. 25038800 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTTAAAGCCTTTCCTCCAAAAGCACAAATGCTATGGTATAATGTGAATGCGGTTAAAGCCTTTCTCTTAGCACTCTGGTTCATACGAAATCATGGAGTTTTTCATGACAAATTCTATGACTGGTCAGATCGTTTTGCCTCAGCTCGCCTTCTTGCTTCGTCTTGGTGCTCTGTATCTAAATTGTTTGGTGATTACTCAATTCAAGACATATGCCTCAATTGGACTGTGTTCATAACCTCTATCTAATTTCCCTAGGTTCTAGTAATTTATGTTTCGATATTATGTGAGTAGGCCTCTTTTTGGTATTCACGAGGTGTATTGTACTTTTTCCTTTGAATCCCATTGTATCTGTCATCTGAATTCATGCCTCAGATTTCATCAATACAATCTGTTTCCTTTTCAAAAAACAAAAAAAGAAGGAAGGAAAAAGAGCATTGTGTTCTATGTATAAAGATGCATAAAATGCTAGTTAACGATTGGTGTGCTTACTCCGTAGTTGTGTTTTGACAGGCGCTGGGCTGTCGTTCCTTGCGGGGGGTGTATTCGGTTGGACTTTTGGCCAAGAGATCGCAAATCATTGGTATCAACTCTACAGGGTGGATACCATGGCTGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAGTGAGGGAAGTTCTTAA

mRNA sequence

ATGCAGTTAAAGCCTTTCCTCCAAAAGCACAAATGCTATGGCGCTGGGCTGTCGTTCCTTGCGGGGGGTGTATTCGGTTGGACTTTTGGCCAAGAGATCGCAAATCATTGGTATCAACTCTACAGGGTGGATACCATGGCTGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAGTGAGGGAAGTTCTTAA

Coding sequence (CDS)

ATGCAGTTAAAGCCTTTCCTCCAAAAGCACAAATGCTATGGCGCTGGGCTGTCGTTCCTTGCGGGGGGTGTATTCGGTTGGACTTTTGGCCAAGAGATCGCAAATCATTGGTATCAACTCTACAGGGTGGATACCATGGCTGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAGTGAGGGAAGTTCTTAA

Protein sequence

MQLKPFLQKHKCYGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKSEGSS*

Homology

[Close]

BLAST of Csa1G629750 vs. Swiss-Prot
Match: SDH6_ARATH (Succinate dehydrogenase subunit 6, mitochondrial OS=Arabidopsis thaliana GN=SDH6 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-17
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 1


Query: 13  YGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKSE 62
           +GA LSFL GGVFGWTFGQE+ANH  QLY++DTMAAQVKFMEWW  KS+
Sbjct: 94  HGAALSFLGGGVFGWTFGQEVANHTLQLYKLDTMAAQVKFMEWWERKSQ 142

[Close]

BLAST of Csa1G629750 vs. Swiss-Prot
Match: SDH6_ORYSJ (Succinate dehydrogenase subunit 6, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH6 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.7e-06
Identity = 20/51 (39.22%), Postives = 28/51 (54.90%), Query Frame = 1


Query: 13  YGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKSEGS 64
           +G  L+   G + G   G E+A HWYQLY+ D   A ++F+ WW +K  G+
Sbjct: 89  HGVVLATGFGAICGAVVGSEVAEHWYQLYKTDKQGANLRFIYWWEDKVAGN 139

[Close]

BLAST of Csa1G629750 vs. TrEMBL
Match: A0A0A0LZX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629750 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MQLKPFLQKHKCYGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKS 60
          MQLKPFLQKHKCYGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKS
Sbjct: 1  MQLKPFLQKHKCYGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKS 60

Query: 61 EGSS 65
          EGSS
Sbjct: 61 EGSS 64

[Close]

BLAST of Csa1G629750 vs. TrEMBL
Match: A0A067L6T8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23900 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.5e-19
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1


Query: 13  YGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKSEG 63
           +GAGLSFLAGGVFGWTFGQE+ANHW QLYR+DT+AAQVKFMEWW  KSEG
Sbjct: 95  HGAGLSFLAGGVFGWTFGQEVANHWLQLYRLDTLAAQVKFMEWWEKKSEG 144

[Close]

BLAST of Csa1G629750 vs. TrEMBL
Match: I3NMS5_HEVBR (Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-18
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = 1


Query: 13  YGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKSE 62
           +GAGLSFLAGGVFGWTFGQEIANHW QLYR+DTMAAQVKFMEWW NK +
Sbjct: 95  HGAGLSFLAGGVFGWTFGQEIANHWLQLYRLDTMAAQVKFMEWWENKCD 143

[Close]

BLAST of Csa1G629750 vs. TrEMBL
Match: A0A061GVQ2_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_041185 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-17
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 13  YGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKSEGSS 65
           +GAGLSF AG VFGWTFGQEIANHWYQLYR+DTMAAQVKF+EWW +K +  S
Sbjct: 96  HGAGLSFAAGAVFGWTFGQEIANHWYQLYRLDTMAAQVKFLEWWESKCQRRS 147

[Close]

BLAST of Csa1G629750 vs. TrEMBL
Match: B9RQ45_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0954650 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-17
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 13  YGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKSEGSS 65
           +GAGLSFLAGGVFG TFG E+ANHW QLYR+DTMAAQVKFMEWW  K EG S
Sbjct: 97  HGAGLSFLAGGVFGLTFGHEVANHWMQLYRLDTMAAQVKFMEWWEKKCEGQS 148

[Close]

BLAST of Csa1G629750 vs. TAIR10
Match: AT1G08480.1 (AT1G08480.1 unknown protein)

HSP 1 Score: 89.4 bits (220), Expect = 9.1e-19
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 1


Query: 13  YGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKSE 62
           +GA LSFL GGVFGWTFGQE+ANH  QLY++DTMAAQVKFMEWW  KS+
Sbjct: 94  HGAALSFLGGGVFGWTFGQEVANHTLQLYKLDTMAAQVKFMEWWERKSQ 142

[Close]

BLAST of Csa1G629750 vs. NCBI nr
Match: gi|700211473|gb|KGN66569.1| (hypothetical protein Csa_1G629750 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.0e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MQLKPFLQKHKCYGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKS 60
          MQLKPFLQKHKCYGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKS
Sbjct: 1  MQLKPFLQKHKCYGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKS 60

Query: 61 EGSS 65
          EGSS
Sbjct: 61 EGSS 64

[Close]

BLAST of Csa1G629750 vs. NCBI nr
Match: gi|778663876|ref|XP_011660175.1| (PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 5.8e-23
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1


Query: 13  YGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKSEGSS 65
           +GAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKSEGSS
Sbjct: 96  HGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKSEGSS 147

[Close]

BLAST of Csa1G629750 vs. NCBI nr
Match: gi|659098830|ref|XP_008450314.1| (PREDICTED: uncharacterized protein LOC103491959 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 3.7e-22
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 1


Query: 13  YGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKSEGSS 65
           +GAGLSFLAGG FGWTFGQEIANHWYQLYR+DTMAAQVKFMEWWRNKSEGSS
Sbjct: 96  HGAGLSFLAGGAFGWTFGQEIANHWYQLYRLDTMAAQVKFMEWWRNKSEGSS 147

[Close]

BLAST of Csa1G629750 vs. NCBI nr
Match: gi|802562383|ref|XP_012066339.1| (PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Jatropha curcas])

HSP 1 Score: 101.7 bits (252), Expect = 5.0e-19
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1


Query: 13  YGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKSEG 63
           +GAGLSFLAGGVFGWTFGQE+ANHW QLYR+DT+AAQVKFMEWW  KSEG
Sbjct: 95  HGAGLSFLAGGVFGWTFGQEVANHWLQLYRLDTLAAQVKFMEWWEKKSEG 144

[Close]

BLAST of Csa1G629750 vs. NCBI nr
Match: gi|1009113463|ref|XP_015873158.1| (PREDICTED: succinate dehydrogenase subunit 6, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 101.3 bits (251), Expect = 6.6e-19
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 1


Query: 13  YGAGLSFLAGGVFGWTFGQEIANHWYQLYRVDTMAAQVKFMEWWRNKSEGSS 65
           +GAGLSFLAGGVFGWTFGQE+ANHW QLYR+DT+AAQ KFMEWW +KSEG S
Sbjct: 97  HGAGLSFLAGGVFGWTFGQEVANHWLQLYRLDTLAAQTKFMEWWASKSEGRS 148

The following BLAST results are available for this feature:

BLAST of Csa1G629750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SDH6_ARATH	1.6e-17	77.55	Succinate dehydrogenase subunit 6, mitochondrial OS=Arabidopsis thaliana GN=SDH6...	[more]
SDH6_ORYSJ	3.7e-06	39.22	Succinate dehydrogenase subunit 6, mitochondrial OS=Oryza sativa subsp. japonica...	[more]

BLAST of Csa1G629750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZX2_CUCSA	1.4e-31	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629750 PE=4 SV=1	[more]
A0A067L6T8_JATCU	3.5e-19	86.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23900 PE=4 SV=1	[more]
I3NMS5_HEVBR	1.0e-18	87.76	Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1	[more]
A0A061GVQ2_THECC	1.5e-17	78.85	Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_041185 PE=4 SV=1	[more]
B9RQ45_RICCO	2.5e-17	80.77	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0954650 PE=4 SV=1	[more]

BLAST of Csa1G629750 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08480.1	9.1e-19	77.55	unknown protein	[more]

BLAST of Csa1G629750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211473\|gb\|KGN66569.1\|	2.0e-31	100.00	hypothetical protein Csa_1G629750 [Cucumis sativus]	[more]
gi\|778663876\|ref\|XP_011660175.1\|	5.8e-23	98.08	PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus]	[more]
gi\|659098830\|ref\|XP_008450314.1\|	3.7e-22	94.23	PREDICTED: uncharacterized protein LOC103491959 [Cucumis melo]	[more]
gi\|802562383\|ref\|XP_012066339.1\|	5.0e-19	86.00	PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Jatropha curcas]	[more]
gi\|1009113463\|ref\|XP_015873158.1\|	6.6e-19	82.69	PREDICTED: succinate dehydrogenase subunit 6, mitochondrial-like [Ziziphus jujub...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
cellular_component	GO:0009536	plastid
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU104856	cucumber EST collection version 3.0	transcribed_cluster
CU105627	cucumber EST collection version 3.0	transcribed_cluster
CU107166	cucumber EST collection version 3.0	transcribed_cluster
CU133754	cucumber EST collection version 3.0	transcribed_cluster
CU141886	cucumber EST collection version 3.0	transcribed_cluster
CU168616	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G629750.1	Csa1G629750.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU105627	CU105627	transcribed_cluster
CU107166	CU107166	transcribed_cluster
CU141886	CU141886	transcribed_cluster
CU104856	CU104856	transcribed_cluster
CU168616	CU168616	transcribed_cluster
CU133754	CU133754	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36708	FAMILY NOT NAMED	coord: 14..62 score: 1.1
None	No IPR available	PANTHER	PTHR36708:SF1	SUBFAMILY NOT NAMED	coord: 14..62 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G629750	Cla007336	Watermelon (97103) v1	cuwmB022
Csa1G629750	MELO3C015091	Melon (DHL92) v3.5.1	cumeB041
Csa1G629750	ClCG03G012390	Watermelon (Charleston Gray)	cuwcgB046
Csa1G629750	Lsi06G006030	Bottle gourd (USVL1VR-Ls)	culsiB058
Csa1G629750	MELO3C015091.2	Melon (DHL92) v3.6.1	cumedB033
Csa1G629750	Cla97C03G062720	Watermelon (97103) v2	cuwmbB042
Csa1G629750	Bhi02G001226	Wax gourd	cuwgoB096
Csa1G629750	gCucsa.355740.2	Cucumber (Gy14) v1	cgycuB500
Csa1G629750	CmaCh11G008960	Cucurbita maxima (Rimu)	cmacuB085
Csa1G629750	CmaCh10G008770	Cucurbita maxima (Rimu)	cmacuB057
Csa1G629750	CmoCh10G009170	Cucurbita moschata (Rifu)	cmocuB047
Csa1G629750	CmoCh11G009100	Cucurbita moschata (Rifu)	cmocuB075
Csa1G629750	Cp4.1LG04g12560	Cucurbita pepo (Zucchini)	cpecuB652
Csa1G629750	Cp4.1LG18g02000	Cucurbita pepo (Zucchini)	cpecuB349
Csa1G629750	CsGy1G030430	Cucumber (Gy14) v2	cgybcuB002
Csa1G629750	Carg25975	Silver-seed gourd	carcuB0905
Csa1G629750	Carg17847	Silver-seed gourd	carcuB0982

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None