CmoCh10G009170 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh10G009170
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Succinate dehydrogenase subunit 6, mitochondrial
Location	Cmo_Chr10 : 4545306 .. 4549146 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAGAACGAGATTGCAGAGCTAGAACAGCTGAAGGATTCTGTTTTCAATCGGATTTGGTTTCTGAAATCTCATTCCTAATCTGTTTTTCGCCGGAAAAGTTATGGAACATTCGTCGTCTCAATCCTTCTTCAGGAAGCACTGGGAAGGTTACAAGGAATTTTGGTCGGAGAGATTTTCGATCCTCGACAACTATTCTCCATTCGTCCAGCGCGACAAGCCACTTCCTCCATGGTCTAGCTCCGATGCCGAGGAATTTATTGCTTTCAACCCCGTCCATGGCCCCGCTGTAATTCATCCTTCACTTTTCTTTTGTTTTACTCCTTTTACTTGGTGCTTGTGAGTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGCCATTGCGTGTTTCTGCTTGGAGATGGAGCTCCCTGGAGCCGCGGATCAATTTCTTTCCGTTTGTTTCGTACTTGTTCATCTTCTTTTACTGTGTTCTTTGCTTCATTCCTTTTGTTCTCGGGTAGTATGCACATATCTCTCGTTTGTTTTATTACTTTGTTTTCTTGATCGATGCATGCCAGTTTGTGTTTCGGATGATCTCATCTGGATTTTTCTATATCTTGATCCTGCAGCTTTGAGGGCGAACATTTCCAACTTGAGATTTATTATTAGATTGCTATATCTGAAATTAAATGTGTTCGTTTACACTTTCTTCTGGAGATTAGGTAATAGAGTTGCTTTTCCTTTTGAATTTGGGATAATCTGACGCTTCCTAGCCCGAGGATTGTTGATGCACAATGGCTTAAGTTATAATATTGTATGCCTCGTCTCCCTCCACTTCTCGTGCTGTATTACTCTGAAATTACTTGAAGGAAATTCTGAGTCAGGCCTTATACTTTTAGAAGCTTTCTGGTGCGGTGAAAAGTATGATTCGTAGTAGGGAACTGGACCAAATATTTCCTTGTTGTATGATTTTTATGATCAACTGTTGATCACTAAATCCCACCCATTTGAGAAGTACATAATAGTGTTCTTCTGAAATCATTTTTATCACAATAAGCAAAATAATATTTTCATCTTTCTTTTGTTTTCCATTAATCGTTATTGAAATGTTATCATTTCTACTATCAAATTAATGCATTTTATTTCTACTAACATATTGCAATATCGATTCACAGGGGTTGGTATCAATTGCTTTTTAATAAAGTACCCATGAACTGTATTGGTAAATGGTAGTTATCATTCTGATTAATAGAACCTTATAGAACACATATTTGCCTGTGATTTTCCTGCCAAGATTTCTCTGCTTTTCTATTATCTTTCTGGTCCTATTATGTCCTGGTTTTTGTTGGCCGTGGCTGATTGTTCATCTTTTCACTGCTGTCTAACTTTCAGTTTTAAAAGTAATCTCCAGTTTATTGTCAGTTAGTATCTACATTATGATACTGCCTGTAATGTTTAATAATTCGATCATGGATTCATTATATGATCTCCCTTGCCTTCTTAAGTTCTACTACTTGGCCTGTTACACGTTCTTCGGGATGAAATATCAGTAATTGCTTAAGTAGTATATCTCCTTAAGACTGGCGGGATAAGCATGGTTGTCATTTTGTTTCACATTTTTCCAACATAGCAGGAAGGCGAAGGCAGATACCTCAACTTTCTGTAATTGAGAGTTCTTGTACATGCTTTTGGATTCCTCATTCGTTAGCTGCTTACTGTTCTTTTTCAGTTGAAGACTGCCAGAGAAGCTGTGAACTTTGGTCTTACAGGAACAGTTATTGGAGCTGTATCAACTGCAGGTGTTGCATGGAAATACTCAAGAAGTTTACATGGTATGCAACTGCCTTGTCTTTCTACTTAACTGCTTCATATATATAAATGAATATCTGTAGCATGCAAACTATCATTTTACTTTACTACCGATAGTGTTGTCCCACATTGGTTGGGGAGGAGAACAAATCACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCTGAAAGGGAAAGCCCAAAGAAAGCCCAAAAAAGATAATATCTGCTAGTGGTGGTTTTGGGTCATTACAAATGGTATCAAAGCCAGACACCGAACTATATGCCAGCCTTTTCGTTGTTTTTCGAAGGGGGGTAGACACGAGGCGGTATACCAGTAAAGACGCTGGGTCCCAAAGGGGGGTGGATTTGGTGGTGGTCCCACATCAATTGGAGAAAGGAACGAGTGCCAGCGAGGACGCTGGGCTCCGAAGGGGGTGGATTGTGATATCCCACATTGGTTGGGGAGGAGAACAAATCACCCTTTATAAGGGTGTGGAAACCTTCCCCAAGCAGACGCATTTTAAAGCTTTGAGGGAAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGGCGTTACAGATATTGTGGCAGTTGTTTCTTCTCTTAGAATCTTTAAGTATCACGTGGTTCAACGATCTCTGCACCGCTTCTCATCAATTCACATTCCTTTTGTTTAATGTCCTGTGGTAGAATCCTGAGAACCTCAAGGCTCAAATTCTTGATTCCAATCCTAAAAGAGTTGAGGAGCTGGCTTTATATATCAAGACCTCAGGAATCTTTTTCTATGTTTAAATCTGTGTCAAGGAAAACCAAAAGGCATAATAAGTGTAAGGCTAACTAGCTTGTTTAAATGTTGAGCATGAGCATTTGTTGTTCTATGTATAAAGATGCATAAAGTGCTCGTAATATACTGGCATGCTTATGCCATAGATGTGTTTTGACAGGCGCTGGGCTGTCGTTACTGGCGGGAGGTGTATTCGGTTGGACTTTTGGCCACGAAATTGCAAATCATTGGTATCAACTTTACAGGGTGGACACCATGGGGGCTCAAGTTAAGTTTATGGAGTGGTGGGGAAACAAGAACGAGGGACATTTTTAAACTCCGAGTTGCAGTTGAAGCAGGTACCACGCCGCTCCCATTTAAAATAAAAATGAATGTGCAACTTTGTTGAAATTCAATGGTTGATTGGTTTGTTTTGTGCTGAACTCTTCCAACCCAAGTTGAGAAAAGGCCTGAATCCCTTGTTTTTTCCCCCAATATCCTCTGGAAATGATTGATTCATTTGCAAGCTGGTTAGGAATGTAGCCATCTTTAACGAGTACCTTGAATCGTGGGTGTTAAGGTCTGAAGCATCCATTATTGGTCCATAATGGATACGTACATCTGTCCTGTTGGAAAGAATTATTTGTGTGTCAATTTTGTGCTCAATCAAGAATTGAACCAAATCAATAAGTTTTTGCAAAAGAAGAATCGAACAAATGACTACTTGGACACGACCAACCAGTTTAGTTCTACTTGTCTTATTGGGTTCATGAACCTAAGAGGAAGAGCCTAGGGATTAAAGCCAAAAAGAGAGAGAGAAGACGAAAGGATGGCGTGTGTAGGTTGTTCGTTGTTCGTTGTAATGACATTGTTGTGTGAAGGTGAGGGAGGCAACGAGGTGGAGGTACGACATATGACGTCGCTGCGTGGGAGGTGAGCAATCAACATGAGCACGAGGAGAGTGATAGGATGAGGCAAACATTTTCGAGACATACCGTAAAAGTTAAGCCTACCACTAACAAATATTGACTTTTTTGGGCTTTTCTTCCTGAGCTTCCCCTCGATTCTAAAATGCATATGTTAGAGAGAGGTTTCTACACGGAATATTTCGTTCCCGATCTAAAATCTCATATGTAGCATCTTTTTAAGTCCACTAATGTCTTGGATCATAAGTTCCAGATCTTCAAAGATTAGTAAGAATAACATTACAATATTCTTTTGACCCAACTCTTCTTAAA

mRNA sequence

TGAAGAACGAGATTGCAGAGCTAGAACAGCTGAAGGATTCTGTTTTCAATCGGATTTGGTTTCTGAAATCTCATTCCTAATCTGTTTTTCGCCGGAAAAGTTATGGAACATTCGTCGTCTCAATCCTTCTTCAGGAAGCACTGGGAAGGTTACAAGGAATTTTGGTCGGAGAGATTTTCGATCCTCGACAACTATTCTCCATTCGTCCAGCGCGACAAGCCACTTCCTCCATGGTCTAGCTCCGATGCCGAGGAATTTATTGCTTTCAACCCCGTCCATGGCCCCGCTTTGAAGACTGCCAGAGAAGCTGTGAACTTTGGTCTTACAGGAACAGTTATTGGAGCTGTATCAACTGCAGGTGTTGCATGGAAATACTCAAGAAGTTTACATGGCGCTGGGCTGTCGTTACTGGCGGGAGGTGTATTCGGTTGGACTTTTGGCCACGAAATTGCAAATCATTGGTATCAACTTTACAGGGTGGACACCATGGGGGCTCAAGTTAAGTTTATGGAGTGGTGGGGAAACAAGAACGAGGGACATTTTTAAACTCCGAGTTGCAGTTGAAGCAGGTACCACGCCGCTCCCATTTAAAATAAAAATGAATGTGCAACTTTGTTGAAATTCAATGGTTGATTGGTTTGTTTTGTGCTGAACTCTTCCAACCCAAGTTGAGAAAAGGCCTGAATCCCTTGTTTTTTCCCCCAATATCCTCTGGAAATGATTGATTCATTTGCAAGCTGGTTAGGAATGTAGCCATCTTTAACGAGTACCTTGAATCGTGGGTGTTAAGGTCTGAAGCATCCATTATTGGTCCATAATGGATACGTACATCTGTCCTGTTGGAAAGAATTATTTGTGTGTCAATTTTGTGCTCAATCAAGAATTGAACCAAATCAATAAGTTTTTGCAAAAGAAGAATCGAACAAATGACTACTTGGACACGACCAACCAGTTTAGTTCTACTTGTCTTATTGGGTTCATGAACCTAAGAGGAAGAGCCTAGGGATTAAAGCCAAAAAGAGAGAGAGAAGACGAAAGGATGGCGTGTGTAGGTTGTTCGTTGTTCGTTGTAATGACATTGTTGTGTGAAGGTGAGGGAGGCAACGAGGTGGAGGTACGACATATGACGTCGCTGCGTGGGAGGTGAGCAATCAACATGAGCACGAGGAGAGTGATAGGATGAGGCAAACATTTTCGAGACATACCGTAAAAGTTAAGCCTACCACTAACAAATATTGACTTTTTTGGGCTTTTCTTCCTGAGCTTCCCCTCGATTCTAAAATGCATATGTTAGAGAGAGGTTTCTACACGGAATATTTCGTTCCCGATCTAAAATCTCATATGTAGCATCTTTTTAAGTCCACTAATGTCTTGGATCATAAGTTCCAGATCTTCAAAGATTAGTAAGAATAACATTACAATATTCTTTTGACCCAACTCTTCTTAAA

Coding sequence (CDS)

ATGGAACATTCGTCGTCTCAATCCTTCTTCAGGAAGCACTGGGAAGGTTACAAGGAATTTTGGTCGGAGAGATTTTCGATCCTCGACAACTATTCTCCATTCGTCCAGCGCGACAAGCCACTTCCTCCATGGTCTAGCTCCGATGCCGAGGAATTTATTGCTTTCAACCCCGTCCATGGCCCCGCTTTGAAGACTGCCAGAGAAGCTGTGAACTTTGGTCTTACAGGAACAGTTATTGGAGCTGTATCAACTGCAGGTGTTGCATGGAAATACTCAAGAAGTTTACATGGCGCTGGGCTGTCGTTACTGGCGGGAGGTGTATTCGGTTGGACTTTTGGCCACGAAATTGCAAATCATTGGTATCAACTTTACAGGGTGGACACCATGGGGGCTCAAGTTAAGTTTATGGAGTGGTGGGGAAACAAGAACGAGGGACATTTTTAA

Homology

[Close]

BLAST of CmoCh10G009170 vs. Swiss-Prot
Match: SDH6_ARATH (Succinate dehydrogenase subunit 6, mitochondrial OS=Arabidopsis thaliana GN=SDH6 PE=1 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.2e-53
Identity = 95/139 (68.35%), Postives = 110/139 (79.14%), Query Frame = 1


Query: 6   SQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKT 65
           S+SF  K+W G K+FWS+R S  +NY+ F +RD PLP WSSSD EEFIA +PVHGP LKT
Sbjct: 4   SESFVGKNWNGLKDFWSDRLSFFENYTRFTKRDAPLPSWSSSDVEEFIASDPVHGPTLKT 63

Query: 66  AREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWTFGHEIANHWYQLYR 125
           AREAV FG+TG  +GAVSTA  AWKYSRS HGA LS L GGVFGWTFG E+ANH  QLY+
Sbjct: 64  AREAVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQLYK 123

Query: 126 VDTMGAQVKFMEWWGNKNE 145
           +DTM AQVKFMEWW  K++
Sbjct: 124 LDTMAAQVKFMEWWERKSQ 142

[Close]

BLAST of CmoCh10G009170 vs. Swiss-Prot
Match: SDH6_ORYSJ (Succinate dehydrogenase subunit 6, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH6 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 9.9e-31
Identity = 60/135 (44.44%), Postives = 84/135 (62.22%), Query Frame = 1


Query: 12  KHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTAREAVN 71
           +H EG K  W++ FS LD +     RDKPLP W+ +D +EFIA +PV+GP LK  RE+  
Sbjct: 5   EHVEGIKAHWAKNFSFLDYFKKVYGRDKPLPKWTDADVDEFIASDPVYGPQLKAMRESRK 64

Query: 72  FGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWTFGHEIANHWYQLYRVDTMGA 131
           F L G ++G     G+A KYS++ HG  L+   G + G   G E+A HWYQLY+ D  GA
Sbjct: 65  FALGGALVGGAHLGGIALKYSKAPHGVVLATGFGAICGAVVGSEVAEHWYQLYKTDKQGA 124

Query: 132 QVKFMEWWGNKNEGH 147
            ++F+ WW +K  G+
Sbjct: 125 NLRFIYWWEDKVAGN 139

[Close]

BLAST of CmoCh10G009170 vs. TrEMBL
Match: I3NMS5_HEVBR (Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.4e-62
Identity = 112/137 (81.75%), Postives = 120/137 (87.59%), Query Frame = 1


Query: 6   SQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKT 65
           S+SFFRKHWEGYKEFW ERFS L+NYS F++RD PLP WS+SD EEFIA +PVHGP LKT
Sbjct: 5   SESFFRKHWEGYKEFWGERFSFLENYSRFIKRDNPLPSWSASDVEEFIASDPVHGPTLKT 64

Query: 66  AREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWTFGHEIANHWYQLYR 125
           AREA  FGL G+VIGAVSTAGVAWKYSRS HGAGLS LAGGVFGWTFG EIANHW QLYR
Sbjct: 65  AREAAKFGLAGSVIGAVSTAGVAWKYSRSFHGAGLSFLAGGVFGWTFGQEIANHWLQLYR 124

Query: 126 VDTMGAQVKFMEWWGNK 143
           +DTM AQVKFMEWW NK
Sbjct: 125 LDTMAAQVKFMEWWENK 141

[Close]

BLAST of CmoCh10G009170 vs. TrEMBL
Match: A0A067L6T8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23900 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 7.6e-62
Identity = 109/142 (76.76%), Postives = 123/142 (86.62%), Query Frame = 1


Query: 5   SSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALK 64
           +S SFFRKHWEGYKEFW ERFS L+NYS F++RDKPLP WS+SD EEFIA +P++GP LK
Sbjct: 4   ASDSFFRKHWEGYKEFWGERFSFLENYSRFIKRDKPLPSWSASDVEEFIASDPINGPVLK 63

Query: 65  TAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWTFGHEIANHWYQLY 124
           +AREA  FGL G+ IGAVSTAGV WKYSRSLHGAGLS LAGGVFGWTFG E+ANHW QLY
Sbjct: 64  SAREAAKFGLVGSFIGAVSTAGVTWKYSRSLHGAGLSFLAGGVFGWTFGQEVANHWLQLY 123

Query: 125 RVDTMGAQVKFMEWWGNKNEGH 147
           R+DT+ AQVKFMEWW  K+EGH
Sbjct: 124 RLDTLAAQVKFMEWWEKKSEGH 145

[Close]

BLAST of CmoCh10G009170 vs. TrEMBL
Match: B9RQ45_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0954650 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-60
Identity = 110/144 (76.39%), Postives = 121/144 (84.03%), Query Frame = 1


Query: 2   EHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGP 61
           + + + SFFRKHWEGYKEFW ERFS L+NYS F++RDKPLP WSSSD E+FIA +PVHGP
Sbjct: 3   DDAETNSFFRKHWEGYKEFWGERFSFLENYSRFIKRDKPLPSWSSSDVEQFIASDPVHGP 62

Query: 62  ALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWTFGHEIANHWY 121
            LKT REA  F  TG+VIGAVSTAG AWKYSRSLHGAGLS LAGGVFG TFGHE+ANHW 
Sbjct: 63  TLKTVREAAKFAFTGSVIGAVSTAGAAWKYSRSLHGAGLSFLAGGVFGLTFGHEVANHWM 122

Query: 122 QLYRVDTMGAQVKFMEWWGNKNEG 146
           QLYR+DTM AQVKFMEWW  K EG
Sbjct: 123 QLYRLDTMAAQVKFMEWWEKKCEG 146

[Close]

BLAST of CmoCh10G009170 vs. TrEMBL
Match: A9P8C2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s00620g PE=2 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.6e-59
Identity = 103/136 (75.74%), Postives = 120/136 (88.24%), Query Frame = 1


Query: 7   QSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKTA 66
           QSFF+KHWEG+ EFW +RFS ++NY+ F++RDKP+P WS SD +EFIA + +HGP L+TA
Sbjct: 11  QSFFKKHWEGFTEFWGDRFSFVENYARFLRRDKPIPSWSDSDVQEFIASDHIHGPTLRTA 70

Query: 67  REAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWTFGHEIANHWYQLYRV 126
           REAVNFGLTG+VIGAVSTAGVAWKYSRSLHGAGLS LAGGVFGWTFGHE+ NHW QLYR+
Sbjct: 71  REAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEVGNHWLQLYRL 130

Query: 127 DTMGAQVKFMEWWGNK 143
           DTM AQVKF+EWW  K
Sbjct: 131 DTMAAQVKFIEWWEKK 146

[Close]

BLAST of CmoCh10G009170 vs. TrEMBL
Match: A0A0V0H9N5_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-58
Identity = 107/144 (74.31%), Postives = 117/144 (81.25%), Query Frame = 1


Query: 2   EHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGP 61
           + SSSQSF R+HWEGYKEFW ERFS LDNYS F++RDKPLP WS SD EEFIA +P+HGP
Sbjct: 4   DSSSSQSFLRRHWEGYKEFWGERFSFLDNYSRFIKRDKPLPSWSDSDVEEFIASDPLHGP 63

Query: 62  ALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWTFGHEIANHWY 121
            L+TAREA      G +IGAVSTAGV WKYSRSLHG  LSL AG VFGWTFG E+ANHW 
Sbjct: 64  TLRTAREAAKISAVGGIIGAVSTAGVTWKYSRSLHGTALSLGAGAVFGWTFGQEVANHWL 123

Query: 122 QLYRVDTMGAQVKFMEWWGNKNEG 146
           QLYR+DTM AQVKFMEWW NK EG
Sbjct: 124 QLYRLDTMAAQVKFMEWWQNKVEG 147

[Close]

BLAST of CmoCh10G009170 vs. TAIR10
Match: AT1G08480.1 (AT1G08480.1 unknown protein)

HSP 1 Score: 209.1 bits (531), Expect = 1.8e-54
Identity = 95/139 (68.35%), Postives = 110/139 (79.14%), Query Frame = 1


Query: 6   SQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPALKT 65
           S+SF  K+W G K+FWS+R S  +NY+ F +RD PLP WSSSD EEFIA +PVHGP LKT
Sbjct: 4   SESFVGKNWNGLKDFWSDRLSFFENYTRFTKRDAPLPSWSSSDVEEFIASDPVHGPTLKT 63

Query: 66  AREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWTFGHEIANHWYQLYR 125
           AREAV FG+TG  +GAVSTA  AWKYSRS HGA LS L GGVFGWTFG E+ANH  QLY+
Sbjct: 64  AREAVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQLYK 123

Query: 126 VDTMGAQVKFMEWWGNKNE 145
           +DTM AQVKFMEWW  K++
Sbjct: 124 LDTMAAQVKFMEWWERKSQ 142

[Close]

BLAST of CmoCh10G009170 vs. NCBI nr
Match: gi|778663876|ref|XP_011660175.1| (PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus])

HSP 1 Score: 275.4 bits (703), Expect = 5.8e-71
Identity = 129/145 (88.97%), Postives = 134/145 (92.41%), Query Frame = 1


Query: 1   MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHG 60
           ME SSSQSFFRKHWEGYKEFWS+RFSILDNYSP+VQR  PLP WSSSD EEFIA +PVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHG 60

Query: 61  PALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWTFGHEIANHW 120
           P LKTAREAVNFGLTG+VIGAVSTAGVAWKYSRSLHGAGLS LAGGVFGWTFG EIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGQEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWGNKNEG 146
           YQLYRVDTM AQVKFMEWW NK+EG
Sbjct: 121 YQLYRVDTMAAQVKFMEWWRNKSEG 145

[Close]

BLAST of CmoCh10G009170 vs. NCBI nr
Match: gi|659098830|ref|XP_008450314.1| (PREDICTED: uncharacterized protein LOC103491959 [Cucumis melo])

HSP 1 Score: 272.3 bits (695), Expect = 4.9e-70
Identity = 127/145 (87.59%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHG 60
           ME SSSQSFFRKHWEGYKEFWSERFSILDNYSP+VQR  PLP WSSSD EEFIA +PVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHG 60

Query: 61  PALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWTFGHEIANHW 120
           P LKTAREAVNFGLTG+VIGAVSTAGVAWKYS+SLHGAGLS LAGG FGWTFG EIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAGGAFGWTFGQEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWGNKNEG 146
           YQLYR+DTM AQVKFMEWW NK+EG
Sbjct: 121 YQLYRLDTMAAQVKFMEWWRNKSEG 145

[Close]

BLAST of CmoCh10G009170 vs. NCBI nr
Match: gi|645218428|ref|XP_008230566.1| (PREDICTED: uncharacterized protein LOC103329821 [Prunus mume])

HSP 1 Score: 252.7 bits (644), Expect = 4.0e-64
Identity = 113/141 (80.14%), Postives = 125/141 (88.65%), Query Frame = 1


Query: 4   SSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGPAL 63
           SS Q FF+KHW+GY++FW ERFS L NYS F++RDKPLPPWS SD E FIAF+PVHGPAL
Sbjct: 5   SSPQYFFKKHWDGYRDFWCERFSFLSNYSKFIKRDKPLPPWSESDVEAFIAFDPVHGPAL 64

Query: 64  KTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWTFGHEIANHWYQL 123
           KTAREAVNFGLTG+VIGAVSTAG  WKYSRSLHGAGLS LAGGVFGWTFGHEIANHW QL
Sbjct: 65  KTAREAVNFGLTGSVIGAVSTAGFTWKYSRSLHGAGLSFLAGGVFGWTFGHEIANHWLQL 124

Query: 124 YRVDTMGAQVKFMEWWGNKNE 145
           YR+DT+ AQ KF+EWW +KNE
Sbjct: 125 YRLDTLAAQTKFLEWWEDKNE 145

[Close]

BLAST of CmoCh10G009170 vs. NCBI nr
Match: gi|1009113463|ref|XP_015873158.1| (PREDICTED: succinate dehydrogenase subunit 6, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 252.7 bits (644), Expect = 4.0e-64
Identity = 116/144 (80.56%), Postives = 127/144 (88.19%), Query Frame = 1


Query: 2   EHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGP 61
           + SSSQSF R+HWEGYKEFWS+RFS  +NYS F  RDKPLP WSSSD EEFIA +PVHGP
Sbjct: 3   DDSSSQSFLRRHWEGYKEFWSDRFSFYENYSRFFNRDKPLPSWSSSDVEEFIASDPVHGP 62

Query: 62  ALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWTFGHEIANHWY 121
           ALKTAREAVNF LTG+VIGAVSTAGVAWKYSRSLHGAGLS LAGGVFGWTFG E+ANHW 
Sbjct: 63  ALKTAREAVNFALTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGQEVANHWL 122

Query: 122 QLYRVDTMGAQVKFMEWWGNKNEG 146
           QLYR+DT+ AQ KFMEWW +K+EG
Sbjct: 123 QLYRLDTLAAQTKFMEWWASKSEG 146

[Close]

BLAST of CmoCh10G009170 vs. NCBI nr
Match: gi|1009113733|ref|XP_015873306.1| (PREDICTED: succinate dehydrogenase subunit 6, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 250.8 bits (639), Expect = 1.5e-63
Identity = 115/144 (79.86%), Postives = 126/144 (87.50%), Query Frame = 1


Query: 2   EHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDAEEFIAFNPVHGP 61
           + SSSQSF R+HWEGYKEFWS+RFS  +NYS F  RDKPLP W SSD EEFIA +PVHGP
Sbjct: 3   DDSSSQSFLRRHWEGYKEFWSDRFSFYENYSRFFNRDKPLPSWPSSDVEEFIASDPVHGP 62

Query: 62  ALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWTFGHEIANHWY 121
           ALKTAREAVNF LTG+VIGAVSTAGVAWKYSRSLHGAGLS LAGGVFGWTFG E+ANHW 
Sbjct: 63  ALKTAREAVNFALTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGQEVANHWL 122

Query: 122 QLYRVDTMGAQVKFMEWWGNKNEG 146
           QLYR+DT+ AQ KFMEWW +K+EG
Sbjct: 123 QLYRLDTLAAQTKFMEWWASKSEG 146

The following BLAST results are available for this feature:

BLAST of CmoCh10G009170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SDH6_ARATH	3.2e-53	68.35	Succinate dehydrogenase subunit 6, mitochondrial OS=Arabidopsis thaliana GN=SDH6...	[more]
SDH6_ORYSJ	9.9e-31	44.44	Succinate dehydrogenase subunit 6, mitochondrial OS=Oryza sativa subsp. japonica...	[more]

BLAST of CmoCh10G009170 vs. TrEMBL


Match Name	E-value	Identity	Description
I3NMS5_HEVBR	3.4e-62	81.75	Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1	[more]
A0A067L6T8_JATCU	7.6e-62	76.76	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23900 PE=4 SV=1	[more]
B9RQ45_RICCO	1.1e-60	76.39	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0954650 PE=4 SV=1	[more]
A9P8C2_POPTR	4.6e-59	75.74	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s00620g PE=2 SV=1	[more]
A0A0V0H9N5_SOLCH	1.3e-58	74.31	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of CmoCh10G009170 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08480.1	1.8e-54	68.35	unknown protein	[more]

BLAST of CmoCh10G009170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778663876\|ref\|XP_011660175.1\|	5.8e-71	88.97	PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus]	[more]
gi\|659098830\|ref\|XP_008450314.1\|	4.9e-70	87.59	PREDICTED: uncharacterized protein LOC103491959 [Cucumis melo]	[more]
gi\|645218428\|ref\|XP_008230566.1\|	4.0e-64	80.14	PREDICTED: uncharacterized protein LOC103329821 [Prunus mume]	[more]
gi\|1009113463\|ref\|XP_015873158.1\|	4.0e-64	80.56	PREDICTED: succinate dehydrogenase subunit 6, mitochondrial-like [Ziziphus jujub...	[more]
gi\|1009113733\|ref\|XP_015873306.1\|	1.5e-63	79.86	PREDICTED: succinate dehydrogenase subunit 6, mitochondrial-like [Ziziphus jujub...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G009170.1	CmoCh10G009170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36708	FAMILY NOT NAMED	coord: 3..145 score: 1.7
None	No IPR available	PANTHER	PTHR36708:SF1	SUBFAMILY NOT NAMED	coord: 3..145 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh10G009170	gCucsa.355740.2	Cucumber (Gy14) v1	cgycmoB0972
CmoCh10G009170	Cla007336	Watermelon (97103) v1	cmowmB039
CmoCh10G009170	Csa1G629750	Cucumber (Chinese Long) v2	cmocuB047
CmoCh10G009170	MELO3C015091	Melon (DHL92) v3.5.1	cmomeB058
CmoCh10G009170	ClCG03G012390	Watermelon (Charleston Gray)	cmowcgB045
CmoCh10G009170	CSPI01G31260	Wild cucumber (PI 183967)	cmocpiB050
CmoCh10G009170	Lsi06G006030	Bottle gourd (USVL1VR-Ls)	cmolsiB059
CmoCh10G009170	Cp4.1LG04g12560	Cucurbita pepo (Zucchini)	cmocpeB062
CmoCh10G009170	Cp4.1LG18g02000	Cucurbita pepo (Zucchini)	cmocpeB055
CmoCh10G009170	MELO3C015091.2	Melon (DHL92) v3.6.1	cmomedB061
CmoCh10G009170	CsaV3_1G043620	Cucumber (Chinese Long) v3	cmocucB0053
CmoCh10G009170	Cla97C03G062720	Watermelon (97103) v2	cmowmbB046
CmoCh10G009170	Bhi02G001226	Wax gourd	cmowgoB0072
CmoCh10G009170	CsGy1G030430	Cucumber (Gy14) v2	cgybcmoB013
CmoCh10G009170	Carg17847	Silver-seed gourd	carcmoB1297
CmoCh10G009170	Carg25975	Silver-seed gourd	carcmoB1200

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh10G009170	Cucurbita moschata (Rifu)	cmocmoB044
CmoCh10G009170	Cucurbita moschata (Rifu)	cmocmoB072
CmoCh10G009170	Cucurbita maxima (Rimu)	cmacmoB067
CmoCh10G009170	Cucurbita maxima (Rimu)	cmacmoB105
CmoCh10G009170	Cucurbita maxima (Rimu)	cmacmoB573
CmoCh10G009170	Cucurbita pepo (Zucchini)	cmocpeB074